View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0815_low_12 (Length: 313)
Name: NF0815_low_12
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 106 - 294
Target Start/End: Complemental strand, 12930308 - 12930120
Alignment:
| Q |
106 |
aattagatttatccttacatataaatcnnnnnnnatagcgtaatgttggatctcgcaagaagtaggatcgcgaatttgtcccgaacatacatttttaatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
12930308 |
aattagatttatccttacatataaatctatttttaaagcgtaatgttggatctcgcaagaagtaggatcgcgaatatgtcccaaacatacattttcaatt |
12930209 |
T |
|
| Q |
206 |
tctctatcatgttgacatttctctctccttcgtctattgtgcaaaagcaagcattttaattgttcaatactttattcttaatgagtttg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12930208 |
tctctatcatgttgacatttctctctccttcgtttattgtgcaaaaacaagcattttaattgatcaatactttattcttaatgagtttg |
12930120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 144 - 313
Target Start/End: Complemental strand, 4481352 - 4481183
Alignment:
| Q |
144 |
cgtaatgttggatctcgcaagaagtaggatcgcgaatttgtcccgaacatacatttttaatttctctatcatgttgacatttctctctccttcgtctatt |
243 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||| | | ||| |
|
|
| T |
4481352 |
cgtaatgttggatctcgcgagaagcatgatcgtgaatttgtcccaaacatgtattttcaatttcactatcatgttgacatttctctctcctccatgtatc |
4481253 |
T |
|
| Q |
244 |
gtgcaaaagcaagcattttaattgttcaatactttattcttaatgagtttgagacaatttctttctcttt |
313 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||| |||| |
|
|
| T |
4481252 |
atacaaaaacaagcattttaattggtcaatactttattcttgatgagttcgggacaatttctttcccttt |
4481183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 313
Target Start/End: Original strand, 23749364 - 23749531
Alignment:
| Q |
146 |
taatgttggatctcgcaagaagtaggatcgcgaatttgtcccgaacatacatttttaatttctctatcatgttgacatttctctctccttcgtctattgt |
245 |
Q |
| |
|
||||| |||||||||| || | |||||| ||||||||||| |||||| |||||| ||||||||||||||||| | ||||| |||| || ||| |||||| |
|
|
| T |
23749364 |
taatgctggatctcgcgagtcgcaggatcacgaatttgtcctgaacatgcattttcaatttctctatcatgttaaaatttcactcttctccgtgtattgt |
23749463 |
T |
|
| Q |
246 |
gcaaaagcaagcattttaattgttcaatactttattcttaatgagtttgagacaatttctttctcttt |
313 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| |||||| | ||||||||||||| |||| |
|
|
| T |
23749464 |
gcaaaaacaagcattttaattggtcaatactttattcttcttgagttcgggacaatttctttcccttt |
23749531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 16085414 - 16085543
Alignment:
| Q |
184 |
tcccgaacatacatttttaatttctctatcatgttgacatttctctctccttcgtctattgtgcaaaagcaagcattttaattgttcaatactttattct |
283 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||| ||||| |||| | | |||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
16085414 |
tcccgaacatgcattttcaatttctttatcatgttgacatatctctttcctccatatattgtgcaaaagcaaacattttaattggtcattactttattct |
16085513 |
T |
|
| Q |
284 |
taatgagtttgagacaatttctttctcttt |
313 |
Q |
| |
|
| ||||||||| |||| |||||||| |||| |
|
|
| T |
16085514 |
tgatgagtttgggacactttctttcccttt |
16085543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 17776750 - 17776608
Alignment:
| Q |
142 |
agcgtaatgttggatctcgcaagaagtaggatcgcgaatttgtcccgaacatacatttttaatttctctatcatgttgacatttctctctccttcgtcta |
241 |
Q |
| |
|
||||||||| | |||||| | ||||| | |||| |||||||||| |||| | || || | |||||||| ||||||| ||||||||||||||| | | || |
|
|
| T |
17776750 |
agcgtaatgcttgatctcccgagaagcatgatcccgaatttgtcaggaacgtgcaattctgatttctctctcatgttaacatttctctctcctccatgta |
17776651 |
T |
|
| Q |
242 |
ttgtgcaaaagcaagcattttaattgttcaatactttattctt |
284 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17776650 |
ttgtgcaaaagcaagcattttaattggtcaatcctttattctt |
17776608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 30244366 - 30244463
Alignment:
| Q |
178 |
aatttgtcccgaacatacatttttaatttctctatcatgttgacatttctctctccttcgtctattgtgcaaaagcaagcattttaattgttcaatac |
275 |
Q |
| |
|
|||||||| ||||| | |||||| ||||||||||||||| | |||||||||| | || ||| ||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
30244366 |
aatttgtctcgaacgtgcattttcaatttctctatcatgcttacatttctctttactccgtgtatcgtgcaaaagcaaacattttaattagtcaatac |
30244463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 27695225 - 27695163
Alignment:
| Q |
222 |
atttctctctccttcgtctattgtgcaaaagcaagcattttaattgttcaatactttattctt |
284 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
27695225 |
atttctctctcctccgtgtattgtggaaaagaaagcattttaattggtctatactttattctt |
27695163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5799 times since January 2019
Visitors: 5759