View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_low_17 (Length: 251)
Name: NF0815_low_17
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 12930066 - 12929848
Alignment:
| Q |
9 |
aaaatctaattaatatcactaagtattttccaatacgaaaaatca-agattaactatatattaataagagtaaaattccctataaataaaacaacaacaa |
107 |
Q |
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| T |
12930066 |
aaaatctaattaatatcactaagtgttttccaataagaaaaatctgagattaactatatattaataagagtaaaattccctataaataaaacaacaacaa |
12929967 |
T |
|
| Q |
108 |
tattatatgtagcgacaatttttataactaagtgtt-caagaattatggtctatccaattaaatcacagcctgaccg-aaagcaaggaggtggtgggata |
205 |
Q |
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||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| | |
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| T |
12929966 |
tattatatgtagcgacagtttttataacgaagtgttaaaagaattatggtctattcaattaaatcacagcctggccgcaaagcacggaggtggtggggca |
12929867 |
T |
|
| Q |
206 |
tagttgaggttggactgta |
224 |
Q |
| |
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|| |||||| ||||||||| |
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| T |
12929866 |
taattgaggctggactgta |
12929848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 13408068 - 13408196
Alignment:
| Q |
115 |
tgtagcgacaatttttataactaagtgttcaagaattatggtctatccaattaaatcacagcctgacc-gaaagcaaggaggtggtgggatatagttgag |
213 |
Q |
| |
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||||| ||||||||||||||| ||||| ||| |||| |||||||||||||||||||||| |||| || |||| || |||||||||||| |||||||||| |
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| T |
13408068 |
tgtagggacaatttttataacgaagtgctcactaattgtggtctatccaattaaatcacaacctggccggaaaacatggaggtggtggggtatagttgag |
13408167 |
T |
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| Q |
214 |
gttggactgtagcactagatttcctttgt |
242 |
Q |
| |
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| T |
13408168 |
gctggaatgtagcactgaatttcctttgt |
13408196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 43021283 - 43021411
Alignment:
| Q |
115 |
tgtagcgacaatttttataactaagtgttcaagaattatggtctatccaattaaatcacagcctgaccg-aaagcaaggaggtggtgggatatagttgag |
213 |
Q |
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|||||||||| |||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||| ||| ||| || |||||||||||| ||||||||| |
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| T |
43021283 |
tgtagcgacagtttttataacaaagtgctcacgaatagtggtctatccaattaaatcacagtctggccgaaaaacatggaggtggtggggcatagttgag |
43021382 |
T |
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| Q |
214 |
gttggactgtagcactagatttcctttgt |
242 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
43021383 |
accggactgtagcactaaatttcctttgt |
43021411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 13377500 - 13377595
Alignment:
| Q |
115 |
tgtagcgacaatttttataactaagtgttcaagaattatggtctatccaattaaatcacagcctgacc-gaaagcaaggaggtggtgggatatagt |
209 |
Q |
| |
|
|||||||||| |||||||||| |||| | | |||||||||||||||||||||||||| |||||| || |||| || |||||||||||| |||||| |
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| T |
13377500 |
tgtagcgacattttttataacgaagtacttacgaattatggtctatccaattaaatcagagcctgtccggaaaacatggaggtggtggggtatagt |
13377595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 39136547 - 39136427
Alignment:
| Q |
110 |
ttatatgtagcgacaatttttataactaagtgttcaagaattatggtctatccaattaaatcacagcctgacc-gaaagcaaggaggtggtgggatatag |
208 |
Q |
| |
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|||| |||||||| | |||||||||| | ||| ||| ||||||||||||||||||||||||| |||| | || ||| || |||||||||||| ||| | |
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| T |
39136547 |
ttatttgtagcgatagtttttataacga-gtgctcacaaattatggtctatccaattaaatcagagcccgtccaaaaaacatggaggtggtggggtattg |
39136449 |
T |
|
| Q |
209 |
ttgaggttggactgtagcacta |
230 |
Q |
| |
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|||||| | |||||||| |||| |
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|
| T |
39136448 |
ttgaggctagactgtagtacta |
39136427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 9528465 - 9528416
Alignment:
| Q |
18 |
ttaatatcactaagtattttccaatacgaaaaatcaagattaactatata |
67 |
Q |
| |
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||||||||||||||||| || ||||| |||||||||| || ||||||||| |
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|
| T |
9528465 |
ttaatatcactaagtatgttgcaatatgaaaaatcaaaatcaactatata |
9528416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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