View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_low_4 (Length: 478)
Name: NF0815_low_4
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 27 - 457
Target Start/End: Complemental strand, 22122005 - 22121575
Alignment:
| Q |
27 |
catattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggac |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22122005 |
catattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggac |
22121906 |
T |
|
| Q |
127 |
agtttcttggaaagaagtaagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtat |
226 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121905 |
agtttcttgggaagaagtaagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtat |
22121806 |
T |
|
| Q |
227 |
ttagttcttaattatattggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgca |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121805 |
ttagttcttaattatattggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgca |
22121706 |
T |
|
| Q |
327 |
aggttttaatttatcaatcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgtt |
426 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121705 |
aggttttaatttatcgatcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgtt |
22121606 |
T |
|
| Q |
427 |
gtgttattgacttaattgctgtattgatgat |
457 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
22121605 |
gtgttattgacttaattgctgtattgatgat |
22121575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 27 - 457
Target Start/End: Original strand, 40512468 - 40512898
Alignment:
| Q |
27 |
catattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggac |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512468 |
catattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggac |
40512567 |
T |
|
| Q |
127 |
agtttcttggaaagaagtaagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtat |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512568 |
agtttcttgggaagaagtaagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtat |
40512667 |
T |
|
| Q |
227 |
ttagttcttaattatattggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512668 |
ttagttcttaattatattggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgca |
40512767 |
T |
|
| Q |
327 |
aggttttaatttatcaatcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgtt |
426 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512768 |
aggttttaatttatcgatcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgtt |
40512867 |
T |
|
| Q |
427 |
gtgttattgacttaattgctgtattgatgat |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
40512868 |
gtgttattgacttaattgctgtattgatgat |
40512898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 19053980 - 19054064
Alignment:
| Q |
40 |
gacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatggg |
124 |
Q |
| |
|
|||| |||||||| || |||| |||||||||||||| ||||| || ||| |||| ||||||||| ||||||| ||||| ||||| |
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| T |
19053980 |
gacaaagtactggatttccaagaggaagttctaaatatagaggtgtgactttgcacaaatgtggaagatgggaggctcggatggg |
19054064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 22616562 - 22616463
Alignment:
| Q |
50 |
tggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaagtaagaa |
149 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||| || ||||| |||||||| || ||||||||||| |||||||| || ||||| || |||| |||| |
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| T |
22616562 |
tggtttctcaagagggagttcgaagtacagaggagtaacactgcacaaatgtggccgttgggaagctcgaatgggacaattccttggcaaaaagtgagaa |
22616463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 39644825 - 39644901
Alignment:
| Q |
51 |
ggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggaca |
127 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || || || |||||||| || ||||||||| | |||||||| |
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| T |
39644825 |
ggtttctcaagggggagttcaaaatacagaggagtaacacttcacaaatgtggtcgttgggaagctagaatgggaca |
39644901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 6064716 - 6064782
Alignment:
| Q |
58 |
caaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatggg |
124 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||| |||||||||||||| ||||||| ||||| ||||| |
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| T |
6064716 |
caagaggaagttctaaatatagaggtgtgactttgcataaatgtggaagatgggaggctcgaatggg |
6064782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 41049756 - 41049852
Alignment:
| Q |
53 |
tttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaagtaagaa |
149 |
Q |
| |
|
||||||||| || ||||| || |||||||||| || ||||| |||||||| || ||||||||||| ||||| || || ||||| || |||| |||| |
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|
| T |
41049756 |
tttctcaagagggagttcgaagtacagaggaggaacactgcacaaatgtggccgttgggaagctcgaatgggtcaattccttggtaaaaagtgagaa |
41049852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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