View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_low_5 (Length: 433)
Name: NF0815_low_5
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 96 - 433
Target Start/End: Original strand, 27843978 - 27844317
Alignment:
| Q |
96 |
atcaatcaagcccttaaaatgcagcggcgtttgaaactcttgagggaaagctttgcggtcctatctagcttgaggacta-tctctacagttgtgcacaga |
194 |
Q |
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| T |
27843978 |
atcaatcaagcccttaaaatgcagtggcgtttgaaactcttgagggaaagctttgcggtcctatctagctttaggactagtctctacagttgtgcacaga |
27844077 |
T |
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| Q |
195 |
taatacccaagtttacacccnnnnnnntaccagctttcaactaaggcaacagcacgagataacaaacaataatatgggaaacatcttttgtggtgttgta |
294 |
Q |
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| T |
27844078 |
taatacccaagtttacccccaaaaaaataccagctttcaactaaggcaacagcacgagataacaaacaataatatgggaaacatcttttgtggtgttgtg |
27844177 |
T |
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| Q |
295 |
tcatatggtatataaaacatggaaaaacattgaaagagaatgatcaaatattaagcacccttgcttggcatgtttaagaaattccaccaaaccaccaa-t |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27844178 |
tcatatggtatataaaacatggaaaaacattgaaagagaatgatcaaatattaagcacccttgcttggcatgtttaagaaattccaccaaaccaccaatt |
27844277 |
T |
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| Q |
394 |
aatctgcaacaaaacaaacaaacttccaaacagaaagaag |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27844278 |
aatctgcaacaaaacaaacaaacttccaaacagaaagaag |
27844317 |
T |
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