View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_1 (Length: 861)

Name: NF0816_high_1
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_1
NF0816_high_1
[»] chr2 (5 HSPs)
chr2 (98-477)||(12937009-12937398)
chr2 (516-705)||(31365460-31365645)
chr2 (546-631)||(2154001-2154087)
chr2 (708-761)||(12936962-12937015)
chr2 (546-653)||(5270442-5270550)
[»] chr8 (16 HSPs)
chr8 (514-706)||(19147511-19147704)
chr8 (514-706)||(10902955-10903143)
chr8 (522-706)||(33691639-33691819)
chr8 (514-676)||(34360394-34360547)
chr8 (514-653)||(26053574-26053714)
chr8 (582-706)||(17564446-17564571)
chr8 (514-706)||(14333905-14334092)
chr8 (514-590)||(36368578-36368649)
chr8 (514-671)||(40346948-40347101)
chr8 (527-655)||(21184067-21184196)
chr8 (547-631)||(42475704-42475789)
chr8 (546-590)||(10226827-10226871)
chr8 (514-554)||(27114995-27115035)
chr8 (602-673)||(19127322-19127393)
chr8 (514-615)||(28733938-28734041)
chr8 (514-563)||(2251988-2252037)
[»] chr4 (14 HSPs)
chr4 (516-706)||(46171601-46171792)
chr4 (514-704)||(31879501-31879687)
chr4 (514-707)||(6582299-6582488)
chr4 (519-707)||(40143274-40143462)
chr4 (527-706)||(35653289-35653469)
chr4 (546-706)||(12389129-12389295)
chr4 (527-677)||(23516100-23516251)
chr4 (514-594)||(47996629-47996709)
chr4 (527-676)||(38935766-38935911)
chr4 (527-655)||(49706383-49706512)
chr4 (514-653)||(27510792-27510927)
chr4 (522-681)||(16048055-16048207)
chr4 (514-590)||(20792706-20792782)
chr4 (527-624)||(26463914-26464012)
[»] scaffold0488 (1 HSPs)
scaffold0488 (522-673)||(7358-7510)
[»] chr1 (13 HSPs)
chr1 (516-706)||(24186619-24186805)
chr1 (519-706)||(17305035-17305227)
chr1 (514-671)||(790091-790249)
chr1 (514-706)||(51236280-51236477)
chr1 (516-706)||(34387530-34387711)
chr1 (523-706)||(27842540-27842724)
chr1 (516-706)||(34393587-34393778)
chr1 (519-672)||(34588855-34588998)
chr1 (514-663)||(22871251-22871396)
chr1 (527-706)||(15649099-15649274)
chr1 (538-700)||(32132009-32132171)
chr1 (546-590)||(8065393-8065437)
chr1 (524-590)||(32000661-32000727)
[»] chr5 (5 HSPs)
chr5 (514-706)||(26818342-26818530)
chr5 (553-706)||(31069107-31069256)
chr5 (516-689)||(3523134-3523308)
chr5 (527-661)||(32955814-32955949)
chr5 (527-687)||(28747537-28747690)
[»] chr3 (10 HSPs)
chr3 (514-706)||(10222984-10223172)
chr3 (519-706)||(13857040-13857217)
chr3 (514-706)||(50308965-50309162)
chr3 (514-706)||(5938043-5938231)
chr3 (514-590)||(33639380-33639456)
chr3 (514-626)||(5931151-5931259)
chr3 (514-630)||(40929370-40929487)
chr3 (528-655)||(40292893-40293021)
chr3 (527-706)||(44773936-44774116)
chr3 (527-615)||(18021743-18021832)
[»] chr7 (9 HSPs)
chr7 (514-706)||(45920037-45920220)
chr7 (548-706)||(45067543-45067702)
chr7 (514-706)||(35086361-35086544)
chr7 (514-706)||(27856474-27856652)
chr7 (514-590)||(32030295-32030371)
chr7 (527-673)||(32745877-32746024)
chr7 (527-671)||(33382345-33382490)
chr7 (527-706)||(46400009-46400189)
chr7 (556-706)||(28681817-28681968)
[»] chr6 (6 HSPs)
chr6 (514-706)||(33702532-33702715)
chr6 (516-673)||(17154269-17154422)
chr6 (514-662)||(29092746-29092890)
chr6 (515-706)||(23111274-23111461)
chr6 (527-631)||(27596516-27596621)
chr6 (546-706)||(12356342-12356503)
[»] scaffold0064 (1 HSPs)
scaffold0064 (546-615)||(54069-54139)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 98 - 477
Target Start/End: Complemental strand, 12937398 - 12937009
Alignment:
Q  98 aaacggacaagattttgtgagaaactctaaaaagccaaatatgatggtatttttgtttttggatcggtttgattcgaaaaatagcaagtaatatagaagg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12937398 aaacggacaagattttgtgagaaactctaaaaagccaaatatgatgatatttttgtttttggatcggtttgattcgaaaaatagcaagta--atagaagg 12937301  T
Q  198 gataatacaagataaatttttaagttacttgacaacttgttttgcacacaataaacaacataaac----taacataacatttatttgattaaattttccc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  12937300 gataatacaagataaatttttaagttacttgacaacttgttttgcacacaataaacaacataaacaaaataacataacatttatttgattaaattttccc 12937201  T
Q  294 ctnnnnnnngaataaaattataaatcaaatggtttaaataatatagagcgtacaacaatgtaaaatcttttatttatttcgatttttatagactgtac-- 391  Q
    ||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  12937200 ctaaaaaaagaataaaattataaatcaaatggtttaaataatagagagcgtacaacaatgtaaaatcttttatttatttcgatttttatagactgtactc 12937101  T
Q  392 ------nnnnnnnnnnggtagaatatagagactatacttgttgacaaatatattgtagaaactaaaagtcaaagaaaattcattagaggcat 477  Q
                    | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12937100 ttttttttttttttttgatagaatatagaaactatacttgttgacatatatattgtagaaactaaaagtcaaagaaaattcattagaggcat 12937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 516 - 705
Target Start/End: Complemental strand, 31365645 - 31365460
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctcc 614  Q
    ||||| |||||||||||||| ||||     |||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  31365645 catttcggttcaaaatattgatttt-----ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcc 31365551  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccc 705  Q
    |||| |||||||||||| |||  | || || |||||||| ||||||||| ||||||||| |||||||| |||||| ||| |||||||||||    
T  31365550 atacttgaaacggttcggttcgattttcccaaaccatttcaaaatttcggttcggttcggttttttaggttaaccgaaccatgcccacccc 31365460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 631
Target Start/End: Original strand, 2154001 - 2154087
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaacggttcg 631  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| | | ||||||||    
T  2154001 ggttcggttcgattcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctaacacggttcg 2154087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 708 - 761
Target Start/End: Complemental strand, 12937015 - 12936962
Alignment:
Q  708 gaggcatatattcacctacattttagaatgagtgctatagtagcatacacttta 761  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||    
T  12937015 gaggcatatattcacttacattttaaaatgagtgctatagtaacatacatttta 12936962  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 653
Target Start/End: Original strand, 5270442 - 5270550
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaacggttcgattccgtatttcc 644  Q
    ||||||||| |||| ||||  ||| ||||||||||| ||||||| ||||| ||||| ||| ||||| ||||||| | |||| ||||| ||| ||  ||||    
T  5270442 ggttcggtttggttaatagacaagcaaacggttaattgaaccataactttggtttagttcagttagttccataccttaaacagttcggttcagttattcc 5270541  T
Q  645 gaaccattt 653  Q
    |||||||||    
T  5270542 gaaccattt 5270550  T

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Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 19147704 - 19147511
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||| |||| ||| | |||||||||||    
T  19147704 tacatttcggttcaaaatattggttttggttcggttcggtttggttcataggtaagaaaatggttaaccgaaccataactttggttcagttcggttagct 19147605  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||| ||| || || ||||| ||||| ||||||||| ||||||||| |||||||| |||||| ||| ||||||||||||    
T  19147604 ccatacctgaaacggttcggttcagttttcccgaatcatttcaaaatttcggttcggttcggttttttaggttaaccgaaccatgcccacccct 19147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 10903143 - 10902955
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     |||||| ||||||||||| |||||||||||||||| ||||||||| |||| ||| | |||||||||||    
T  10903143 tacatttcggttcaaaatattggtttt-----ggttcgattcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagct 10903049  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||| ||| || || ||||||||||| ||||||||| |||||||||||||||| | |||||| ||| ||||||||||||    
T  10903048 ccatacctgaaacggttcggttcggttttcccgaaccatttcaaaatttcggttcggttcgattttttgggttaaccgaaccatgcccacccct 10902955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 522 - 706
Target Start/End: Original strand, 33691639 - 33691819
Alignment:
Q  522 ggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacat 620  Q
    |||||||||||||||||||     ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||||||| |    
T  33691639 ggttcaaaatattggtttt-----ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacct 33691733  T
Q  621 gaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    ||||||||||| ||| || || ||||||||||| |||||||||||||||||||  ||||||| |||||  ||| ||||||||||||    
T  33691734 gaaacggttcggttcggttttcccgaaccatttcaaaatttcgattcggttcggatttttaggttaactgaaccatgcccacccct 33691819  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 514 - 676
Target Start/End: Complemental strand, 34360547 - 34360394
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    |||||||| ||||||||||||||||||     |||||||||||||| |||||||||||||||||||| ||||| || ||||| ||| | |||| ||||||    
T  34360547 tacatttttgttcaaaatattggtttt-----ggttcggttcggtttataggtaagaaaacggttaaccgaactataactttggttcagttcgattagct 34360453  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatt 676  Q
    |||| | ||||||||||||     || ||| |||||||||| |||||||| |||||||||||||    
T  34360452 ccatgcctgaaacggttcg-----gttttttcgaaccatttcaaaatttccattcggttcgatt 34360394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 653
Target Start/End: Original strand, 26053574 - 26053714
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||| |||||||| ||||||||||||| |||| ||||| ||| |||||||||| |||||||| ||||| ||| ||||||||||| |    
T  26053574 tacatttcggttcaaaattttggttttggttcggttcggttaggttaataggcaagcaaacggttaaccgaaccataactttggttcaattcggttagtt 26053673  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattt 653  Q
    ||| || | |||||||||| |||  |  |||||||||||||    
T  26053674 ccaaaccttaaacggttcggttcatttattccgaaccattt 26053714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 582 - 706
Target Start/End: Original strand, 17564446 - 17564571
Alignment:
Q  582 cgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatttttt 680  Q
    ||||||||| |||| ||| | ||||||||||||||||| |||||||||||| |||  | || ||||||||||| ||||||||| ||||||||| ||||||    
T  17564446 cgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcggtttttt 17564545  T
Q  681 agattaaccaaacaatgcccacccct 706  Q
    || |||||| ||  ||||||||||||    
T  17564546 aggttaaccgaatcatgcccacccct 17564571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 14334092 - 14333905
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||||||||| ||||||||||||      ||||||||||||||||  ||| ||||||||| |||| ||| | ||| |||||||    
T  14334092 tacatttcggttcaaaatattggttttggttcggttcggt------cataggtaagaaaacgagtaaccgaaccataactttggttcagttcagttagct 14333999  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcgg-----ttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| ||||||||||||     || ||  |||||||||| ||||||||| ||| |     |||| ||||||||||||||| ||| ||||||||||||    
T  14333998 ccatacctgaaacggttcg-----gttttctcgaaccatttcaaaatttcggttcagttcaattcggttttttagattaaccgaaccatgcccacccct 14333905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 590
Target Start/End: Complemental strand, 36368649 - 36368578
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    ||||||| |||||||||||||||||||     ||||||||||||||||||| ||||||||||||||| |||||||||    
T  36368649 tacatttcggttcaaaatattggtttt-----ggttcggttcggttcatagataagaaaacggttaaccgaaccata 36368578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 514 - 671
Target Start/End: Complemental strand, 40347101 - 40346948
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||||||||||||||||||||||| ||||||||||     ||||||||||||| |||||||||||| || ||| ||| | ||| | ||||||||| |    
T  40347101 tacattttggttcaaaatattggttttggttcggttcg-----gttcataggtaagcaaacggttaatcaaatcataactctggttcagttcggttagtt 40347007  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggtt 671  Q
     || || | |||||||| | ||| || || || |||||||| || | ||||||||||||    
T  40347006 tcaaaccttaaacggtttggttcggttttccctaaccatttcaacaattcgattcggtt 40346948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 655
Target Start/End: Original strand, 21184067 - 21184196
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| |||||||| ||||||||  ||| ||||| ||| |||||| ||||||||| |||| ||| | || |||||  |||| || | ||||    
T  21184067 aaaatatttgttttggttcggtttggttcggtatataagtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaac 21184166  T
Q  626 ggttcgattccgtatttccgaaccatttta 655  Q
    |||||| ||| || ||||||||||||||||    
T  21184167 ggttcggttcagtttttccgaaccatttta 21184196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 631
Target Start/End: Complemental strand, 42475789 - 42475704
Alignment:
Q  547 gttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaacggttcg 631  Q
    ||||||||||||| ||||||| | ||| |||||| |||||||| ||||| ||| ||||||||||| |||| || | ||||||||||    
T  42475789 gttcggttcggttaataggtatgcaaatggttaaccgaaccataactttggttcaattcggttagttccaaaccttaaacggttcg 42475704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 590
Target Start/End: Complemental strand, 10226871 - 10226827
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||    
T  10226871 ggttcggttcggttaataggcaagaaaacggttaaccgaaccata 10226827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 554
Target Start/End: Complemental strand, 27115035 - 27114995
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggtt 554  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  27115035 tacattttggttcaaaattttggttttggttcggttcggtt 27114995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 673
Target Start/End: Complemental strand, 19127393 - 19127322
Alignment:
Q  602 ttcggttagctccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcg 673  Q
    ||||||||||||||||| | |||||||||| ||| || || ||||| ||||| ||||||||| || ||||||    
T  19127393 ttcggttagctccatacctaaaacggttcggttcggttttcccgaatcatttcaaaatttcggtttggttcg 19127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 615
Target Start/End: Original strand, 28733938 - 28734041
Alignment:
Q  514 tacattttggttcaaaatattggtttttgt-tcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagc 611  Q
    ||||||||||||| |||| |||||||| || |||||||||||  | | ||||| ||| |||||||||| | |||||| ||||| ||||| |||||||||     
T  28733938 tacattttggttccaaattttggttttcgtatcggttcggtttagataataggcaagcaaacggttaaccaaaccataactttggtttagttcggttagt 28734037  T
Q  612 tcca 615  Q
    ||||    
T  28734038 tcca 28734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 2251988 - 2252037
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcata 563  Q
    |||||||||||||||||| ||||||||  |||||||| ||| ||||||||    
T  2251988 tacattttggttcaaaattttggttttgattcggttcagtttggttcata 2252037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 516 - 706
Target Start/End: Complemental strand, 46171792 - 46171601
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctcc 614  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||| |||| |||| ||| | |||||||||||||    
T  46171792 cattttggttcaaaatattggttttggttcggttcggttcgattcacaggtaagaaaacggttaaccgaaacataactttggttcagttcggttagctcc 46171693  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||| | |||||||||| ||| || || || |||||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||||||||    
T  46171692 atacctaaaacggttcggttcggttttcccaaaccatttcaaaatttcggttcggttcgattttttaggttaaccgaaccatgcccacccct 46171601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 514 - 704
Target Start/End: Original strand, 31879501 - 31879687
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  31879501 tacatttcggttcaaaatattagtttt-----ggttcggttcggttcataggtaagaaaacggttaatcgaaccataactttggttcagttcggttagct 31879595  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccaccc 704  Q
    | |||| |||||||||||| ||   | || || |||||||| ||||||||  ||||||||| || ||||| |||||| ||| ||||||||||    
T  31879596 ctatacttgaaacggttcggtttgattttcccaaaccatttcaaaatttcagttcggttcggttgtttaggttaaccgaaccatgcccaccc 31879687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 514 - 707
Target Start/End: Complemental strand, 6582488 - 6582299
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     |||||||||||||||||||||| |||||||||||| ||||| ||| |||| ||| | |||||||||||    
T  6582488 tacatttcggttcaaaatattggtttt-----ggttcggttcggttcataggtaggaaaacggttaaccgaactataactttggttcagttcggttagct 6582394  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccctg 707  Q
    | |||| | ||||||| || ||| || || ||||| ||||| ||||||| | ||||||||| |||||||| |||||| ||| |||||||||||||    
T  6582393 ctataccttaaacggtgcggttcggttttcccgaatcatttcaaaattttggttcggttcggttttttaggttaaccgaaccatgcccacccctg 6582299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 519 - 707
Target Start/End: Original strand, 40143274 - 40143462
Alignment:
Q  519 tttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccata 617  Q
    ||||||||||||||||||||||     |||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| | ||||||||| | ||||    
T  40143274 tttggttcaaaatattggtttt-----ggttcggttcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagttgcata 40143368  T
Q  618 catgaaacggttcgattccgtatttccgaaccattttaaaatttc-----gattcggttcgattttttagattaaccaaacaatgcccacccctg 707  Q
    | |||||||||||| |||  | |||| ||||||||||||||||||     | ||||||||| |||||||| |||||| ||| |||||||||||||    
T  40143369 cctgaaacggttcggttcgat-tttcggaaccattttaaaatttcagttcggttcggttcggttttttaggttaaccgaaccatgcccacccctg 40143462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 527 - 706
Target Start/End: Original strand, 35653289 - 35653469
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||| ||||||||  |||| ||||||||| ||| |||||| | ||||||| |||| ||| | ||||| |||||||| || ||||||    
T  35653289 aaaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggatagctccaaacttgaaac 35653388  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcga-ttttttagattaaccaaacaatgcccacccct 706  Q
    |||||||||| || ||||| |||||||||||||||||| ||||||| || |||||||  |||||| ||| ||||||||||||    
T  35653389 ggttcgattcggt-tttccaaaccattttaaaatttcggttcggtttgatttttttaagttaaccgaaccatgcccacccct 35653469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 546 - 706
Target Start/End: Complemental strand, 12389295 - 12389129
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaacggttcgattccgtatttcc 644  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||| | ||||||||||||||| | | |||| ||||| ||| || || |     
T  12389295 ggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagttcggttagctccatgccttaaacagttcggttcggttttcct 12389196  T
Q  645 gaaccattttaaaat-----ttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||| |||| |||||     |||||||||||||| |||||||| |||| | ||| ||||||||||||    
T  12389195 gaactatttcaaaatttcaattcgattcggttcggttttttaggttaatcgaaccatgcccacccct 12389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 527 - 677
Target Start/End: Complemental strand, 23516251 - 23516100
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||| ||||||  |||| ||||||||||||| | |||| | ||||||| |||| ||| | |||||||||||||| || | |||     
T  23516251 aaaatatttgttttggttcgattcggtatggttaataggtaagaaaatgattaaccaaaccataactttggttcagttcggttagctccaaacttaaaat 23516152  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattt 677  Q
    |||||| |||  | || ||||||||||| ||||||||| |||||||||||||    
T  23516151 ggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcgattt 23516100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 594
Target Start/End: Complemental strand, 47996709 - 47996629
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccatacttt 594  Q
    ||||||| ||||||||||||| ||||   |||||||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  47996709 tacatttcggttcaaaatattagtttgatttcggttcggttcggttcataggtaagaaaattgttaaccgaaccaaacttt 47996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 527 - 676
Target Start/End: Complemental strand, 38935911 - 38935766
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||| ||||||||  |||| ||||||||| ||| |||||| | ||||||| |||| ||||| ||| |||||||||| || ||||||    
T  38935911 aaaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggtttagttcagttagctccaaacttgaaac 38935812  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatt 676  Q
    ||     ||| || |||||||||||||| ||||||||| ||| ||||||||    
T  38935811 gg-----ttcagtttttccgaaccatttcaaaatttcggttcagttcgatt 38935766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 655
Target Start/End: Original strand, 49706383 - 49706512
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccatactttag-tttaattcggttagctccatacatgaaac 625  Q
    ||||||||  |||| |||||||| ||||||||| ||||||||| ||| |||||| |||||||||  |||| |||| || |||||  |||| || | ||||    
T  49706383 aaaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggtttagtttggttacttccaaactttaaac 49706482  T
Q  626 ggttcgattccgtatttccgaaccatttta 655  Q
    |||||| ||| || || |||||||||||||    
T  49706483 ggttcggttcagttttcccgaaccatttta 49706512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 653
Target Start/End: Complemental strand, 27510927 - 27510792
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||| ||||||||     |||||||||||||| ||||| ||| |||||||||| |||||||| ||||| ||| | ||||||||| |    
T  27510927 tacatttcggttcaaaattttggtttt-----ggttcggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagtt 27510833  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattt 653  Q
     || || | ||| |||||| ||| ||  |||||||||||||    
T  27510832 tcaaaccttaaatggttcggttcggttattccgaaccattt 27510792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 522 - 681
Target Start/End: Original strand, 16048055 - 16048207
Alignment:
Q  522 ggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggt--tagctccatac 618  Q
    |||||||||||||||||||     |||| ||||||||||||||| ||| |||||| ||| | |||||| ||||| ||| ||||||||  ||||||||||     
T  16048055 ggttcaaaatattggtttt-----ggtttggttcggttcataggcaaggaaacggataaccaaaccataactttggttcaattcggttatagctccataa 16048149  T
Q  619 atgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatttttta 681  Q
     ||||||||||||     || || ||||||||||| ||||||||| ||| ||||  |||||||    
T  16048150 ctgaaacggttcg-----gttttcccgaaccatttcaaaatttcggttcagttcagtttttta 16048207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 590
Target Start/End: Original strand, 20792706 - 20792782
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    |||||||||||||||||||||  |||  |||| ||| |||||| |||||||  || ||||||||||| |||||||||    
T  20792706 tacattttggttcaaaatattattttaggttcagtttggttcgattcatagacaacaaaacggttaaccgaaccata 20792782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 624
Target Start/End: Complemental strand, 26464012 - 26463914
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaa 624  Q
    |||||||| ||||| ||||||||||||  | || ||||||||| ||| |||||| | |||||| ||||| ||| | || ||||||||||| ||||||||    
T  26464012 aaaatatttgttttggttcggttcggtatgattaataggtaagcaaatggttaaccaaaccataactttggttcagtttggttagctccaaacatgaaa 26463914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 522 - 673
Target Start/End: Original strand, 7358 - 7510
Alignment:
Q  522 ggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacat 620  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| |    
T  7358 ggttcaaaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacgt 7457  T
Q  621 gaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcg 673  Q
    ||||||||||||||| || || ||||||||||| ||||||||| |||||||||    
T  7458 gaaacggttcgattcagttttcccgaaccatttcaaaatttcggttcggttcg 7510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 516 - 706
Target Start/End: Complemental strand, 24186805 - 24186619
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctcc 614  Q
    ||||| |||||||||||||||||||     |||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  24186805 catttcggttcaaaatattggtttt-----ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcc 24186711  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||| |||||||||||| ||| || || ||||||||||| ||||||||| ||||||||| |||||||| |||||| ||| ||||||||||||    
T  24186710 atacctgaaacggttcggttcggttttcccgaaccatttcaaaatttcggttcggttcggttttttaggttaaccgaaccatgcccacccct 24186619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 519 - 706
Target Start/End: Original strand, 17305035 - 17305227
Alignment:
Q  519 tttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccata 617  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   ||||||||| | ||||    
T  17305035 tttggttcaaaatattggttttggttcggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcggttcggttagttgcata 17305134  T
Q  618 catgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatt-----ttttagattaaccaaacaatgcccacccct 706  Q
    |||||||||||||| ||| || |||||||||||||||||||||||| ||||||||| ||     |||||| |||||| ||| ||||||||||||    
T  17305135 catgaaacggttcggttcggt-tttccgaaccattttaaaatttcggttcggttcggttcggttttttaggttaaccgaaccatgcccacccct 17305227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 514 - 671
Target Start/End: Complemental strand, 790249 - 790091
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||    
T  790249 tacattttggttcaaaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaact 790150  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggtt 671  Q
    |||||| |||||||||||| |||  | ||  |||||||||| ||||||||| |||||||    
T  790149 ccatacctgaaacggttcggttcgattttctcgaaccatttcaaaatttcggttcggtt 790091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 514 - 706
Target Start/End: Original strand, 51236280 - 51236477
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||| | || |||||| |    
T  51236280 tacattttggttcaaaatattgattttggttcggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagtttggttaggt 51236379  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaat-----ttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||| ||| || |||| ||||||||| |||||     || | ||||||||| |||||||| |||||||||| ||||||||||||    
T  51236380 ccatacctgaaacggttcggttcggt-tttctgaaccatttcaaaattttggtttggttcggttcggttttttaggttaaccaaaccatgcccacccct 51236477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 516 - 706
Target Start/End: Original strand, 34387530 - 34387711
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctcc 614  Q
    ||||| |||||||||||||||||||     |||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||    
T  34387530 catttcggttcaaaatattggtttt-----ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcc 34387624  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||| |||||||||||| ||| || || || |||||||| |||||     |||||||||||||||||| |||||| ||| ||||||||||||    
T  34387625 atacctgaaacggttcggttcggttttcccaaaccatttcaaaat-----ttcggttcgattttttaggttaaccgaaccatgcccacccct 34387711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 523 - 706
Target Start/End: Original strand, 27842540 - 27842724
Alignment:
Q  523 gttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatg 621  Q
    ||||||||||||||||||     |||||||||| ||||||| |||||||||||||||| ||||||||| |||| ||| | ||||||||||||||||| ||    
T  27842540 gttcaaaatattggtttt-----ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctg 27842634  T
Q  622 aaacggttcgattccgtatttccgaaccattttaaaat-----ttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||||||| |||  | || ||||||||||| |||||     |||| |||||||||||||||||| |||||| ||| ||||||||||||    
T  27842635 aaacggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcggttcgattttttaggttaaccgaaccatgcccacccct 27842724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 516 - 706
Target Start/End: Complemental strand, 34393778 - 34393587
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctcc 614  Q
    ||||| |||||||||||||| ||||     |||||||||| ||||||| |||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  34393778 catttcggttcaaaatattgatttt-----ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcc 34393684  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaat-----ttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||| |||||||||||| |||  | || ||||||||||| |||||     |||| |||||||||||||||||| |||||| ||| ||||||||||||    
T  34393683 atacctgaaacggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcggttcgattttttaggttaaccgaaccatgcccacccct 34393587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 519 - 672
Target Start/End: Original strand, 34588855 - 34588998
Alignment:
Q  519 tttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccata 617  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||| | ||||    
T  34588855 tttggttcaaaatattggtttt-----ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagttgcata 34588949  T
Q  618 catgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttc 672  Q
    | |||||||||||| |      ||||||||||||||||||||| || ||||||||    
T  34588950 cctgaaacggttcggt------tttccgaaccattttaaaattccggttcggttc 34588998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 663
Target Start/End: Complemental strand, 22871396 - 22871251
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     ||||||||||  ||||||||||||||||||||||| |||||||| ||||| ||| | ||  |||| ||    
T  22871396 tacatttcggttcaaaatattggtttt-----ggttcggttctattcataggtaagaaaacggttaaccgaaccataactttggttcagtttagttaact 22871302  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcg 663  Q
    | |||| | |||||||||||||| || || || |||||| | |||||||||    
T  22871301 ctatacctaaaacggttcgattcggttttcccaaaccatatcaaaatttcg 22871251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 706
Target Start/End: Original strand, 15649099 - 15649274
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| |||||| | |||||| ||||| ||| |  ||||||||||||| || | |||     
T  15649099 aaaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagctcggttagctccaaacttaaaat 15649198  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||  | || ||||||||||| |||||     ||||||||| |||||| ||||||| |||| ||||||||||||    
T  15649199 ggttcggttcgattttcccgaaccatttcaaaat-----ttcggttcggttttttggattaactaaaccatgcccacccct 15649274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 700
Target Start/End: Original strand, 32132009 - 32132171
Alignment:
Q  538 ttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattcc 636  Q
    ||||||||| ||||||  |||| ||||||||| ||| |||||| | ||||||| |||| | | ||||||||||| |||| || |||||||||||| |||     
T  32132009 ttttgttcgattcggtatggttaataggtaagcaaatggttaaccaaaccataactttggctcaattcggttagttccaaacttgaaacggttcggttcg 32132108  T
Q  637 gtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgccc 700  Q
     | || |||||||| || ||||||| | ||||||||| |||||| | |||||||||| ||||||    
T  32132109 attttcccgaaccacttcaaaattttggttcggttcggtttttt-ggttaaccaaaccatgccc 32132171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 590
Target Start/End: Complemental strand, 8065437 - 8065393
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  8065437 ggttcggttcggttcataagtaagaaaacggttaaccgaaccata 8065393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 590
Target Start/End: Complemental strand, 32000727 - 32000661
Alignment:
Q  524 ttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    |||||||||||| |||| |||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  32000727 ttcaaaatattgattttggttcggtttggttcggttaataggtaaacaaatgattaatcgaaccata 32000661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 514 - 706
Target Start/End: Original strand, 26818342 - 26818530
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||| ||| ||||||||||||||| |||||||| ||||| ||| | |||||||||||    
T  26818342 tacatttcggttcaaaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagct 26818441  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||||||     || ||||||||||| ||||||| | ||||||||| ||||||||||||||| ||| ||||||||||||    
T  26818442 ccatacctgaaacggttcgatt-----ttcccgaaccatttcaaaattttggttcggttcggttttttagattaaccgaaccatgcccacccct 26818530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 553 - 706
Target Start/End: Complemental strand, 31069256 - 31069107
Alignment:
Q  553 ttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattccgtatttccgaaccat 651  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||||||| ||||| |||||  |||  | ||||||||||||    
T  31069256 ttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaatggttcagttcgatttttccgaaccat 31069157  T
Q  652 tttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    || |||||     ||||||||| |||||||| |||||||||| ||||||||||||    
T  31069156 ttcaaaat-----ttcggttcggttttttaggttaaccaaaccatgcccacccct 31069107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 516 - 689
Target Start/End: Complemental strand, 3523308 - 3523134
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctcc 614  Q
    ||||| ||||||||||||||||| |     |||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||    
T  3523308 catttcggttcaaaatattggttat-----ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcc 3523214  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaat-----ttcgattcggttcgattttttagattaacc 689  Q
    |||| |||||||||| | |||  | || ||||||||||| |||||     |||||||||||||| |||||||| ||||||    
T  3523213 atacctgaaacggtttggttcgattttcccgaaccatttcaaaatttcggttcgattcggttcggttttttaggttaacc 3523134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 661
Target Start/End: Complemental strand, 32955949 - 32955814
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| | |||| | ||||||| ||||  || | |||||||||||||  || ||||||    
T  32955949 aaaatatttgttttggttcggttcggtatggttaataggtaagcaaatgattaaccaaaccataactttgattcagttcggttagctcccaacctgaaac 32955850  T
Q  626 ggttcgattccgtatttccgaaccattttaaaattt 661  Q
    |||||| ||| || |||||||||||||| |||||||    
T  32955849 ggttcggttcggtttttccgaaccatttcaaaattt 32955814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 687
Target Start/End: Complemental strand, 28747690 - 28747537
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| |||||| | |||||| ||||||||| | |||||||||||||       ||||    
T  28747690 aaaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttagttcagttcggttagctcc-------aaac 28747598  T
Q  626 ggttcgattccgtatttcc-gaaccattttaaaatttcgattcggttcgattttttagattaa 687  Q
     |||||||||   |||||| ||||||||| ||||||||| |||| ||||||||||| ||||||    
T  28747597 agttcgattc--gatttcctgaaccatttcaaaatttcggttcgattcgattttttggattaa 28747537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 514 - 706
Target Start/End: Original strand, 10222984 - 10223172
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||| ||| ||||||||||||||| |||||||| ||||| ||| | |||||||||||    
T  10222984 tacatttcggttcaaaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagct 10223083  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||||||     || ||||||||||| ||||||| | ||||||||| ||||||||||||||| ||| ||||||||||||    
T  10223084 ccatacctgaaacggttcgatt-----ttcccgaaccatttcaaaattttggttcggttcggttttttagattaaccgaaccatgcccacccct 10223172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 519 - 706
Target Start/End: Complemental strand, 13857217 - 13857040
Alignment:
Q  519 tttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccata 617  Q
    ||||||||||||||||||||||     |||| |||||||||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||| | ||||    
T  13857217 tttggttcaaaatattggtttt-----ggtttggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagttgcata 13857123  T
Q  618 catgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    | |||||||||||| ||| || ||||||||||||||||||||     ||||||||| |||||||| |||||| ||| ||||||||||||    
T  13857122 cctgaaacggttcggttcggt-tttccgaaccattttaaaat-----ttcggttcggttttttaggttaaccgaaccatgcccacccct 13857040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 50309162 - 50308965
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||| |||| |||| |||| ||| | |||| ||||||    
T  50309162 tacatttcggttcaaaatattgggtttgattcggttcggttcggttcataagtaagaaaacggttaaccgaaacataactttggttcagttcgattagct 50309063  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgatt-----ttttagattaaccaaacaatgcccacccct 706  Q
    |||||| | |||||||||| ||| || |||| ||||||||| ||||||||| ||||||||| ||     |||||| |||||| ||| ||||||||||||    
T  50309062 ccatacctaaaacggttcggttcggtttttc-gaaccatttcaaaatttcggttcggttcggttcggttttttaggttaaccgaaccatgcccacccct 50308965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 514 - 706
Target Start/End: Original strand, 5938043 - 5938231
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     |||||||||  |||||||||||||||||||||||| ||||||||| |||| ||| | ||||  || |     
T  5938043 tacatttcggttcaaaatattggtttt-----ggttcggtttagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcgtatacca 5938137  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
     ||||| |||||||||||| ||| || |||||||||||||| ||||||||| ||||||||| |||||||| |||||| ||| ||| ||||||||    
T  5938138 gcatacctgaaacggttcggttcagtttttccgaaccatttcaaaatttcggttcggttcggttttttaggttaaccgaaccatgtccacccct 5938231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 590
Target Start/End: Original strand, 33639380 - 33639456
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    |||||||||||||||||| ||  |||| |||||||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  33639380 tacattttggttcaaaattttaattttggttcggttcgattcggttaatagggaagcaaacggttaatcgaaccata 33639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 5931259 - 5931151
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| ||||||||||||| |||||     ||||||||||||||||||||||||||||||||||| ||||  || ||||| ||| | ||||| |||||    
T  5931259 tacatttcggttcaaaatattagtttt-----ggttcggttcggttcataggtaagaaaacggttaaccgaattataactttggttcagttcggatagct 5931165  T
Q  613 ccatacatgaaacg 626  Q
     ||||| |||||||    
T  5931164 gcatacctgaaacg 5931151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 514 - 630
Target Start/End: Complemental strand, 40929487 - 40929370
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||| |||||||| |||||||||||||| ||| | ||| | | |||| ||||| |||||||| ||||| ||| | ||||||||| |    
T  40929487 tacatttcggttcaaaattttggttttagttcggttcggttcagttaacaggcacgcaaacagttaaccgaaccataactttggttcagttcggttagtt 40929388  T
Q  613 ccatacatgaaacggttc 630  Q
    ||| || | |||||||||    
T  40929387 ccaaaccttaaacggttc 40929370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 655
Target Start/End: Original strand, 40292893 - 40293021
Alignment:
Q  528 aaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccatactttagtttaa-ttcggttagctccatacatgaaacg 626  Q
    |||||||  |||| |||||||| ||||||||| ||||||||| ||| |||||| |||||||||  |||| || | || |||||  |||| || | |||||    
T  40292893 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttccaaactttaaacg 40292992  T
Q  627 gttcgattccgtatttccgaaccatttta 655  Q
    ||||| ||| || || |||||||||||||    
T  40292993 gttcggttcagttttcccgaaccatttta 40293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 706
Target Start/End: Original strand, 44773936 - 44774116
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaac 625  Q
    ||||||||  |||| ||||||||||||  |||| |||| |||| ||| ||||||   |||||| ||||| ||| | |||||||| ||||| || | |||     
T  44773936 aaaatatttattttggttcggttcggtatggttaatagttaagcaaatggttaactaaaccataactttggttcagttcggttaactccaaacttaaaat 44774035  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
     ||||| ||| || ||| |||||||||| ||||||||| ||||||| | |||||| | |||||  ||| ||| ||||||||    
T  44774036 tgttcggttcggtttttgcgaaccatttcaaaatttcggttcggtttggttttttgggttaacggaaccatgaccacccct 44774116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 18021743 - 18021832
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctcca 615  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||  ||| |||||| | |||||| ||||| ||| | ||||||||||||||    
T  18021743 aaaatatttgttttggttcggttcggtatggttaataggtaaacaaatggttaaccaaaccataactttggttgagttcggttagctcca 18021832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 514 - 706
Target Start/End: Original strand, 45920037 - 45920220
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     ||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| | |||||||||||    
T  45920037 tacatttcggttcaaaatattggtttt-----ggttcggttcggttcataggtaagaaaacggttaacctaaccataactttggttcagttcggttagct 45920131  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| |||||||||||||||| || || ||||||||||| |||||     ||||||||| |||||||| |||||| ||| ||||||||||||    
T  45920132 ccatacctgaaacggttcgattcagttttcccgaaccatttcaaaat-----ttcggttcggttttttaggttaaccgaaccatgcccacccct 45920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 548 - 706
Target Start/End: Original strand, 45067543 - 45067702
Alignment:
Q  548 ttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattccgtatttccga 646  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||| ||| | ||||||||||| ||||| |||||||||||| ||| || || ||||    
T  45067543 ttcggttcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctgcatacctgaaacggttcggttcagttttcccga 45067642  T
Q  647 accattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    ||||||| ||||||||| ||||||| | |||||||| |||||| ||| ||||||||||||    
T  45067643 accatttcaaaatttcggttcggtttggttttttaggttaaccgaaccatgcccacccct 45067702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 35086544 - 35086361
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||| ||||     ||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||    
T  35086544 tacatttcggttcaaaatattgatttt-----ggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaact 35086450  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| ||||| |||||| ||| || || ||||||||||| |||||||| ||||||     |||||||| |||||||||| ||||||||||||    
T  35086449 ccatacctgaaatggttcggttcagttttcccgaaccatttcaaaatttcaattcgg-----ttttttaggttaaccaaaccatgcccacccct 35086361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 27856652 - 27856474
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccatactttagtttaattcggttagctc 613  Q
    ||||||| |||||||||||||||||||     ||||||||||| ||||||| |||||||||||||||  ||||||||         | || |||||||||    
T  27856652 tacatttcggttcaaaatattggtttt-----ggttcggttcgattcatagataagaaaacggttaactgaaccata---------actttggttagctc 27856567  T
Q  614 catacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    ||||| | |||||||| | ||  || ||| | |||||||| ||||||||| ||||||||||||||||||||||||| ||| || |||||||||    
T  27856566 catacttaaaacggtttggtttagttttttcaaaccatttcaaaatttcggttcggttcgattttttagattaaccgaaccatacccacccct 27856474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 590
Target Start/End: Original strand, 32030295 - 32030371
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata 590  Q
    ||||||| |||||||||| |||||||| ||||||||||||| || | ||||||||| ||||||||||||||||||||    
T  32030295 tacatttcggttcaaaattttggttttggttcggttcggtttggctaataggtaagcaaacggttaatcgaaccata 32030371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 527 - 673
Target Start/End: Complemental strand, 32746024 - 32745877
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| |||||  | ||||||| |||| ||| | |||||||||||||| || | ||||    
T  32746024 aaaatatttgttttggttcggttcggtatggttaataggtaagtaaatggttagccaaaccataactttggttcagttcggttagctccaaacttaaaac 32745925  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcg 673  Q
    |||||| |||  | |||||||||||||| ||||||||| || ||||||    
T  32745924 ggttcggttcaatttttccgaaccatttcaaaatttcggtttggttcg 32745877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 527 - 671
Target Start/End: Original strand, 33382345 - 33382490
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| |||||| | |||||| ||||| ||| | ||||||||||| || || ||||||    
T  33382345 aaaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagcttcaaacttgaaac 33382444  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggtt 671  Q
    | |||| ||| || || ||||||||||| |||||| || |||||||    
T  33382445 gattcggttcggttttcccgaaccatttcaaaattacggttcggtt 33382490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 527 - 706
Target Start/End: Complemental strand, 46400189 - 46400009
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| |||||| |||||| |||| ||||||||| ||| |||||| ||||||||| |||| ||| | || |||||  |||| || | ||||    
T  46400189 aaaatatttgttttggttcggatcggtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaac 46400090  T
Q  626 ggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| ||| || |||||||||||||| || | || | ||||||||| ||  |  | |||||| ||| ||||||||||||    
T  46400089 ggttcggttcagtttttccgaaccatttcaacactttggttcggttcggttaatatggttaaccgaaccatgcccacccct 46400009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 706
Target Start/End: Complemental strand, 28681968 - 28681817
Alignment:
Q  556 ggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattccgtatttccgaaccatttt 654  Q
    |||| ||||||||| ||| |||||| | ||||||| |||| ||| | ||||||||| |||| || |||||||||||  |||  | || || ||||||||     
T  28681968 ggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagatccaaacttgaaacggttcagttcgattttcccaaaccatttc 28681869  T
Q  655 aaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    ||||||||  ||||||||| |||||| | ||||   ||| ||||||||||||    
T  28681868 aaaatttcagttcggttcgtttttttgggttaattgaaccatgcccacccct 28681817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 514 - 706
Target Start/End: Complemental strand, 33702715 - 33702532
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     ||||||||||||||| |||||||||||| |||||| |||||||| ||||| ||| | |||||||||||    
T  33702715 tacatttcggttcaaaatattggtttt-----ggttcggttcggttcttaggtaagaaaatggttaaccgaaccataactttggttcagttcggttagct 33702621  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    |||||| ||||||||||||     || || || |||||||| ||||||||| ||||||||| |||||||| |||||| ||| ||||||||||||    
T  33702620 ccatacctgaaacggttcg-----gttttcccaaaccatttcaaaatttcggttcggttcggttttttaggttaaccgaaccatgcccacccct 33702532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 516 - 673
Target Start/End: Original strand, 17154269 - 17154422
Alignment:
Q  516 cattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctcc 614  Q
    ||||| |||||||||||||||||||     ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||    
T  17154269 catttcggttcaaaatattggtttt-----ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactcc 17154363  T
Q  615 atacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcg 673  Q
    |||| |||||||||| | ||| || || | ||||||||| ||||||||| |||||||||    
T  17154364 atacctgaaacggtttggttcggttttcctgaaccatttcaaaatttcggttcggttcg 17154422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 514 - 662
Target Start/End: Original strand, 29092746 - 29092890
Alignment:
Q  514 tacattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagct 612  Q
    ||||||| |||||||||||||||||||     ||||||||| ||||||||| ||||||||||||||  |||||||| ||||| ||| | |||||||||||    
T  29092746 tacatttcggttcaaaatattggtttt-----ggttcggtttggttcatagataagaaaacggttatccgaaccataactttggttcagttcggttagct 29092840  T
Q  613 ccatacatgaaacggttcgattccgtatttccgaaccattttaaaatttc 662  Q
    |||||| |||||||||||| |||  | || |||||| |||| ||||||||    
T  29092841 ccatacctgaaacggttcggttcgattttcccgaacgatttcaaaatttc 29092890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 515 - 706
Target Start/End: Complemental strand, 23111461 - 23111274
Alignment:
Q  515 acattttggttcaaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctc 613  Q
    ||||||||||||||||| ||||||||     |||||||||||||| ||||  ||| ||| | |||| ||||||||| ||||  || | ||||||||| ||    
T  23111461 acattttggttcaaaattttggtttt-----ggttcggttcggttaatagacaagcaaatgattaaccgaaccataactttgattcagttcggttagttc 23111367  T
Q  614 catacatgaaacggttcgattccgtatttccgaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    || |||| |||||||||| ||| ||  ||||||||||||| || | |||| ||||||| | || ||  | |||||| ||| ||||||||||||    
T  23111366 caaacatcaaacggttcggttcggttattccgaaccatttcaacacttcggttcggtttggttattatggttaaccgaaccatgcccacccct 23111274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 631
Target Start/End: Complemental strand, 27596621 - 27596516
Alignment:
Q  527 aaaatattggtttttgttcggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctccatacatgaaac 625  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||| ||| |||||| | |||||| | ||| ||| | ||||||||||| |  |||||||||    
T  27596621 aaaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataattttggttcagttcggttagctgccaacatgaaac 27596522  T
Q  626 ggttcg 631  Q
    ||||||    
T  27596521 ggttcg 27596516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 706
Target Start/End: Original strand, 12356342 - 12356503
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccata-ctttagtttaattcggttagctccatacatgaaacggttcgattccgtatttcc 644  Q
    |||||||||||||  ||||  ||| |||| ||||| | ||||||| |||| ||| ||||||||||  |||| || | |||||||||| ||| ||   |||    
T  12356342 ggttcggttcggtcaatagccaagcaaactgttaaccaaaccataactttggttcaattcggttatttccaaaccttaaacggttcggttcggttactcc 12356441  T
Q  645 gaaccattttaaaatttcgattcggttcgattttttagattaaccaaacaatgcccacccct 706  Q
    ||||||||| || | |||||||||||||| ||  |  | |||||| ||| ||||||||||||    
T  12356442 gaaccatttcaacacttcgattcggttcgtttaatatggttaaccgaaccatgcccacccct 12356503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 615
Target Start/End: Original strand, 54069 - 54139
Alignment:
Q  546 ggttcggttcggttcataggtaagaaaacggttaatcgaaccat-actttagtttaattcggttagctcca 615  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| ||||| ||| | ||||||||| ||||    
T  54069 ggttcggttcggttaataggtaagcaaacggttaaccgaaccataactttggttcagttcggttagttcca 54139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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