View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_113 (Length: 228)
Name: NF0816_high_113
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_113 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0567 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17635005 - 17634778
Alignment:
| Q |
1 |
ccccttactgctgccataaaggattttggtggggatttgatcaattgtgcagccgtgacagaagtagaggctgctggcgtaggagcaatctataccggaa |
100 |
Q |
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| T |
17635005 |
ccccttactgccgccataaaggattttggtggggatttgatcaattgtgcagccgtgacagaagtagaggctactggcgtaggagcaatccgtaccggaa |
17634906 |
T |
|
| Q |
101 |
ttgacggcagagaggccggtgatgttaattctgcctgccaatcgaacggcatggcagagaatcgtgaagcaacaatcaaagaaaagatgaaggaaacaat |
200 |
Q |
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| T |
17634905 |
ttgacggcagagaggccggtgatgttaattctgcctgccaatcgaacggcatggcagagaatcgtgaagcaacaatcaaagaaaagatgaaggaaacaat |
17634806 |
T |
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| Q |
201 |
acagaagaggagggagcaatcgcaaacc |
228 |
Q |
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| T |
17634805 |
acagaagaggagggagcaatcgcaaacc |
17634778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 3009486 - 3009594
Alignment:
| Q |
93 |
taccggaattgacggcagagaggccggtgatgttaattctgcctgccaatcgaacggcatggcagagaatcgtgaagcaacaatcaa--agaaaagatga |
190 |
Q |
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| T |
3009486 |
taccggaactgacggcagagaggctggtgatgctaattctggctgccaatcgaaccgcatggcatagagccttgaagcaacaatcaacgagaagagatga |
3009585 |
T |
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| Q |
191 |
aggaaacaa |
199 |
Q |
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| T |
3009586 |
gggaaacaa |
3009594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0567 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 439 - 333
Alignment:
| Q |
95 |
ccggaattgacggcagagaggccggtgatgttaattctgcctgccaatcgaacggcatggcagagaatcgtgaagcaacaatcaa--agaaaagatgaag |
192 |
Q |
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|||||| |||||| |||||||||||||||| |||||||| ||||||||||||| ||||| || ||| | ||||||||||||||| |||| |||||| | |
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| T |
439 |
ccggaactgacggtagagaggccggtgatgctaattctgtctgccaatcgaaccgcatgacatagagccttgaagcaacaatcaacgagaagagatgagg |
340 |
T |
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| Q |
193 |
gaaacaa |
199 |
Q |
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| T |
339 |
gaaacaa |
333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 100340 - 100277
Alignment:
| Q |
93 |
taccggaattgacggcagagaggccggtgatgttaattctgcctgccaatcgaacggcatggca |
156 |
Q |
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|||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
100340 |
taccggaactgacagcagagaggccggtgatgctaattctgcctgccaatcaaacggcatggca |
100277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 20380376 - 20380344
Alignment:
| Q |
127 |
aattctgcctgccaatcgaacggcatggcagag |
159 |
Q |
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| T |
20380376 |
aattctgcctgccaatcgaacgacatggcagag |
20380344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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