View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_19 (Length: 525)
Name: NF0816_high_19
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 29671898 - 29672371
Alignment:
| Q |
1 |
ctcagaagaatcttcagcattctttgataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacccaccacggatcatttcacccaat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671898 |
ctcagaagaatcttcagcattcttggataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacccaccacggatcatttcacccaat |
29671997 |
T |
|
| Q |
101 |
ttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctccaacggaatctcaacgtccggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671998 |
ttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctccaacggaatctcaacgtccggag |
29672097 |
T |
|
| Q |
201 |
acttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacatattcttatcaactggatcaacctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672098 |
acttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacatattcttatcaactggatcaacctt |
29672197 |
T |
|
| Q |
301 |
cggatgagctatcattgtagatttgagttgattatcgaaatcataacggcaaacggtggttaaatcaccgttaggtgtgacacgaatatgataaggaata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672198 |
gggatgagctatcattgtagatttgagttgattatcgaaatcataacggcaaacggtggttaaatcaccgttaggtgtgacacgaatatgataaggaata |
29672297 |
T |
|
| Q |
401 |
tcatcttcagacatagctaacaaacggttattgaaataaaccaaaccagcgttagcaacacccattccgtgggt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672298 |
tcatcttcagacatagctaacaaacggttattgaaataaaccaaaccagcgttagcaacacccattccgtgggt |
29672371 |
T |
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