View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_20 (Length: 515)
Name: NF0816_high_20
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 142 - 504
Target Start/End: Original strand, 24634793 - 24635151
Alignment:
| Q |
142 |
cgtgcgagattcttaaccacattcttcattcttccgggcaagactcctaacatttgttttctgcgttcctgaatttgatgaatttcgagaatttctacat |
241 |
Q |
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| T |
24634793 |
cgtgcgagattcttaaccacattcttcattcttccgggctagactcctaacatttgttttctgcgttcctgaatttgatgaatttcgagaatttctacat |
24634892 |
T |
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| Q |
242 |
tgtttcacctttgttccaatacattttaagtagtaaaaacatggagggttccaaagttgtgtaaacaaactgatacaggcaattacattcaagtaataca |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24634893 |
tgtttcacctttgttccaatacattttaagtagtaaaaaaatggagggttccaaagttgtgtaaacaaattgatacaggcaattacattcaagtaataca |
24634992 |
T |
|
| Q |
342 |
aatatgcaacattgcatcaacaagatttcaataccattacgggccggaactggaatgtgtgtgtgcgcgcgcacacaaacacacaatagcggtaattaga |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||| || |
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| T |
24634993 |
aatatgcaacattgcatcaacaagatttcaataccattacgggccggaactagaa----tgtgcgcgcgcgcacacaaatacacaatagcggtaattgga |
24635088 |
T |
|
| Q |
442 |
tctttcttacgtttcaaggcaaatccaacctgaaaattcagaagctaagagacgtagcttcat |
504 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24635089 |
tctttcttgcgtttcaaggcaaatccaacctgaaaattcagaagctaagagatgtagcttcat |
24635151 |
T |
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