View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_26 (Length: 478)

Name: NF0816_high_26
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_26
NF0816_high_26
[»] chr3 (5 HSPs)
chr3 (8-394)||(40861270-40861648)
chr3 (21-99)||(45682164-45682242)
chr3 (21-101)||(28742688-28742768)
chr3 (21-69)||(40176668-40176716)
chr3 (21-61)||(44110863-44110903)
[»] chr1 (8 HSPs)
chr1 (21-92)||(5445267-5445339)
chr1 (21-94)||(35604601-35604674)
chr1 (14-93)||(11569961-11570040)
chr1 (14-81)||(11566923-11566990)
chr1 (28-99)||(30056750-30056821)
chr1 (23-81)||(1745061-1745119)
chr1 (21-99)||(15727013-15727091)
chr1 (21-94)||(40634369-40634442)
[»] chr8 (8 HSPs)
chr8 (22-99)||(36316965-36317042)
chr8 (21-99)||(28538055-28538133)
chr8 (21-99)||(38503494-38503572)
chr8 (21-92)||(6519093-6519164)
chr8 (21-99)||(30775231-30775309)
chr8 (21-94)||(9134151-9134224)
chr8 (21-94)||(28540671-28540744)
chr8 (14-82)||(11777711-11777779)
[»] chr7 (4 HSPs)
chr7 (21-99)||(27334367-27334445)
chr7 (19-74)||(22198845-22198900)
chr7 (19-74)||(22238921-22238976)
chr7 (21-81)||(48615339-48615399)
[»] chr5 (4 HSPs)
chr5 (21-99)||(1269708-1269785)
chr5 (18-93)||(37083383-37083458)
chr5 (17-99)||(22579668-22579750)
chr5 (17-75)||(28998044-28998102)
[»] chr2 (3 HSPs)
chr2 (43-94)||(5147760-5147811)
chr2 (21-99)||(17928018-17928096)
chr2 (12-99)||(34234879-34234966)
[»] chr4 (5 HSPs)
chr4 (23-99)||(30865886-30865962)
chr4 (21-99)||(38593931-38594009)
chr4 (23-94)||(49211027-49211098)
chr4 (17-93)||(27923056-27923132)
chr4 (27-99)||(54632576-54632648)
[»] chr6 (1 HSPs)
chr6 (21-91)||(2133302-2133372)
[»] scaffold0066 (1 HSPs)
scaffold0066 (14-63)||(42487-42536)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 40861270 - 40861648
Alignment:
Q  8 ccaacaatatcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaacacatgga 107  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40861270 ccaaaaatctcatacaaatttcttaaacgagacacattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaacacatgga 40861369  T
Q  108 tctcatggtaaaacagagtgtttaatgtatcatctttcgagtctccccaacataaacccannnnnnnnattccataatgaaaatacttgttaaatattgt 207  Q
    |||||| |||||| | |||| |||||||| || ||       |||||||||| |||||||        ||||||||||||||||||||||||||||||||    
T  40861370 tctcatcgtaaaagatagtgcttaatgtagcacct-------ctccccaacagaaacccattttttt-attccataatgaaaatacttgttaaatattgt 40861461  T
Q  208 gtcttcaaaaggaagacccttctattgtggatggtctaggttaataggctaaaaatctctttttacctgtcaatttagctgacgagcagatccattcact 307  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  40861462 gtcttcaaaaggaaggtccttctattgtggatggtctaggttaataggctaaaagtctctttttacctgtcaatttacctgacgagcagatgcattcact 40861561  T
Q  308 taacaaattagccgtttataaaatgctacaaaactatacaaagcttgtcgttgcttcgacaataaccaaaatttgccttgttaacat 394  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  40861562 taacaaattagccgtttataaaatgctacaaaactacacaaaacttgtctttgcttcaacaataaccaaaatttgccttgttaacat 40861648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 45682164 - 45682242
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| |||||||| ||||||||||||||| ||||||||||  ||||||||||||||| |||||| ||||||| ||||    
T  45682164 acaaatatcttaaacaagactcattaatcatctatcaataaccttacatcattacgttttaatattttaatattaaaaa 45682242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 28742688 - 28742768
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaaca 101  Q
    |||||||| |||||||||| ||||||||||| ||  | ||| | ||||||||| | ||| |||||| ||||||| ||||||    
T  28742688 acaaattttttaaacgagattcattaatcatataagagtaattttacatcattgcattttaatattttaatattaaaaaca 28742768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 40176716 - 40176668
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacat 69  Q
    ||||||||||||||||  | | |||||||||||||||||||||| ||||    
T  40176716 acaaatttcttaaacggcatttattaatcatttatcaataactccacat 40176668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 44110903 - 44110863
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataa 61  Q
    ||||||||||||||||||| || |||||||| |||||||||    
T  44110903 acaaatttcttaaacgagattctttaatcatctatcaataa 44110863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 5445267 - 5445339
Alignment:
Q  21 acaaatttcttaaac-gagactcattaatcatttatcaataactctacatcattacgtttcaatattctaata 92  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5445267 acaaatgtcttaaaccgagactcattaatcatttatcaataactctatatcattacatttcaatattctaata 5445339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 35604601 - 35604674
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    |||||| |||||||| |||  |||| |||||||||||||||||||| |||||||| |||||||||| |||||||    
T  35604601 acaaatgtcttaaacaagatccatttatcatttatcaataactctatatcattacatttcaatattttaatatt 35604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 11569961 - 11570040
Alignment:
Q  14 atatcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatat 93  Q
    |||||| |||||||||| ||| |||||| ||||||||  ||||||||||| || |||||||| ||||||| || ||||||    
T  11569961 atatcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttcaattttttaatat 11570040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 11566923 - 11566990
Alignment:
Q  14 atatcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttca 81  Q
    |||||| |||||||||| ||| |||||| ||||||||  ||||||||||| || |||||||| |||||    
T  11566923 atatcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttca 11566990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 30056750 - 30056821
Alignment:
Q  28 tcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||| | | ||||||||| | |||||||||||||| |||||||  |||||||||| ||||||| ||||    
T  30056750 tcttaaacaaaattcattaatcctatatcaataactctatatcattatatttcaatattataatattaaaaa 30056821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 1745119 - 1745061
Alignment:
Q  23 aaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttca 81  Q
    ||||||||||||||||| ||| | |||||| || |||||||||| |||||||| |||||    
T  1745119 aaatttcttaaacgagattcaattatcattgattaataactctatatcattacatttca 1745061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 15727013 - 15727091
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||| ||| ||||||||||  ||||||| || ||||||||||| || ||||||   |||||||||||||||||| ||||    
T  15727013 acaatttttttaaacgagatacattaattatctatcaataactgtatatcattgtatttcaatattctaatattaaaaa 15727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 40634369 - 40634442
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    ||||| |||| |||||| |||  |||||||| ||||||||||| || |||||| | ||| ||||||||||||||    
T  40634369 acaaaattctcaaacgaaacttgttaatcatctatcaataactttatatcattgcattttaatattctaatatt 40634442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 36317042 - 36316965
Alignment:
Q  22 caaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||||| | ||| |||||||||||||| ||||    
T  36317042 caaatttcttaaacgaaactcattaatcatatatcaataattctacatcatttcattttaatattctaatattaaaaa 36316965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 28538133 - 28538055
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| ||||||||||||||| |||||||| ||||||||| | || |||||||  ||||||||||| |||||| ||||    
T  28538133 acaaatgtcttaaacgagactcgttaatcatctatcaataattttatatcattaaatttcaatattcgaatatttaaaa 28538055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 38503494 - 38503572
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| ||||||||| |||  ||||||||  |||||||||||||| || ||||| |||||||||||||||||| ||||    
T  38503494 acaaatatcttaaacgtgacaaattaatcacatatcaataactctatattattacatttcaatattctaatattaaaaa 38503572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 6519093 - 6519164
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaata 92  Q
    |||||||||||||| |||||||| ||||||  ||||||||||| || |||||||| ||||||| || |||||    
T  6519093 acaaatttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaattttttaata 6519164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 30775309 - 30775231
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| ||||||  | |||||||||||| ||||||||||||| || ||||||||  || | |||||||||||| ||||    
T  30775309 acaaatgtcttaagtgggactcattaatcttttatcaataactttatatcattacactttattattctaatattaaaaa 30775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 9134224 - 9134151
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    ||||| |||||||| |||||||| ||||||  ||||||||||| || |||||||  ||||||| || |||||||    
T  9134224 acaaagttcttaaatgagactcactaatcaactatcaataactttatatcattatatttcaattttttaatatt 9134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 28540744 - 28540671
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    |||||||||||||| |||||||| ||||||  ||||||||  | || |||||||| ||||||| || |||||||    
T  28540744 acaaatttcttaaaagagactcactaatcaactatcaatagttttatatcattacatttcaattttttaatatt 28540671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 11777711 - 11777779
Alignment:
Q  14 atatcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaa 82  Q
    |||||| |||||||||||||| |||||  | ||||||  ||||||||||| || |||||||| ||||||    
T  11777711 atatcacacaaatttcttaaatgagacctactaatcaactatcaataactttatatcattacatttcaa 11777779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 27334445 - 27334367
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| || ||||| |||| |||||||||| |||||||||||||| |||||||| |||||||||| ||||||| ||||    
T  27334445 acaaatgtcataaacaagacccattaatcatctatcaataactctatatcattacatttcaatattttaatattaaaaa 27334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 22198845 - 22198900
Alignment:
Q  19 atacaaatttcttaaacgagactcattaatcatttatcaataactctacatcatta 74  Q
    |||||||||||||||||||||||  ||||| || ||||||||| ||||||||||||    
T  22198845 atacaaatttcttaaacgagactttttaattatatatcaataaatctacatcatta 22198900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 22238976 - 22238921
Alignment:
Q  19 atacaaatttcttaaacgagactcattaatcatttatcaataactctacatcatta 74  Q
    |||||||||||||||||||||||  ||||| || ||||||||| ||||||||||||    
T  22238976 atacaaatttcttaaacgagactttttaattatatatcaataaatctacatcatta 22238921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 48615339 - 48615399
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttca 81  Q
    ||||||||||||||||  |  |||||||||| ||||||||||| || |||||||| |||||    
T  48615339 acaaatttcttaaacggaatccattaatcatctatcaataactttatatcattacatttca 48615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 1269708 - 1269785
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||| ||||||||||||| |||||||||| ||||||||||| || ||||||||  ||||||||||||||||| ||||    
T  1269708 acaaatatcttaaacgagacacattaatcatgtatcaataactttatatcattac-attcaatattctaatattaaaaa 1269785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 37083458 - 37083383
Alignment:
Q  18 catacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatat 93  Q
    ||||||||||||||||| || || | ||||||| | ||||||||||||| |||||||| |||||||||| ||||||    
T  37083458 catacaaatttcttaaatgaaacccgttaatcagtaatcaataactctatatcattacatttcaatattttaatat 37083383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 22579750 - 22579668
Alignment:
Q  17 tcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||||||| |||||| |||||||||||| || ||||||||||| || || ||||| ||| ||| || ||||||| ||||    
T  22579750 tcatacaaattttttaaacaagactcattaattatctatcaataactttatataattacattttaattttttaatattaaaaa 22579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 28998044 - 28998102
Alignment:
Q  17 tcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattac 75  Q
    ||||||||||||||||||| |||| || ||||||| ||| ||||||| || ||||||||    
T  28998044 tcatacaaatttcttaaacaagacccactaatcatctataaataactttatatcattac 28998102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 5147811 - 5147760
Alignment:
Q  43 attaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||||||    
T  5147811 attaatcatttattaataactctatatcattacatttcaatattctaatatt 5147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 17928096 - 17928018
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    ||||||||||| |||||||||| |||||||| |||||||||||| | |||||||  ||| ||||||| |||||| ||||    
T  17928096 acaaatttcttgaacgagactcgttaatcatatatcaataactcaatatcattatattttaatattccaatattaaaaa 17928018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 34234966 - 34234879
Alignment:
Q  12 caatatcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||| |||||||||||| |||||  |||| || |||||| |||||||||||| || |||||||| ||||||| || ||||||| ||||    
T  34234966 caatctcatacaaatttattaaattagacccactaatcaattatcaataactttatatcattacatttcaattttttaatattaaaaa 34234879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 30865962 - 30865886
Alignment:
Q  23 aaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||||||| |||||||| ||||||  ||||||||||| || |||||||| ||||||| || ||||||| ||||    
T  30865962 aaatttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaattttttaatattaaaaa 30865886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 38594009 - 38593931
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||||||||| || ||| ||||||||| |||   |||||||||||| |||| ||||||||||| |||||| ||||    
T  38594009 acaaatttcttaaatgaaactaattaatcatctatttgtaactctacatcgttacatttcaatattcaaatatttaaaa 38593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 49211098 - 49211027
Alignment:
Q  23 aaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatatt 94  Q
    ||||| |||||| ||||| ||||||||| |||||||||||| || |||||||| ||| ||| || |||||||    
T  49211098 aaattccttaaatgagacccattaatcaattatcaataactttatatcattacattttaattttttaatatt 49211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 27923132 - 27923056
Alignment:
Q  17 tcatacaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatat 93  Q
    ||||| |||| | |||||||  || |||||||||| || ||||||||||| || ||||| ||| |||||||||||||    
T  27923132 tcatataaatgttttaaacggtacacattaatcatctaccaataactctatataattacattttaatattctaatat 27923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 54632576 - 54632648
Alignment:
Q  27 ttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaatattgaaaa 99  Q
    |||||||||  ||||| ||||| || ||||||||||| |  ||||||||||||||||||| ||| ||| ||||    
T  54632576 ttcttaaacatgactcgttaattatctatcaataactatgtatcattacgtttcaatattttaacattaaaaa 54632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 2133302 - 2133372
Alignment:
Q  21 acaaatttcttaaacgagactcattaatcatttatcaataactctacatcattacgtttcaatattctaat 91  Q
    |||||| | ||||||||||| ||||||| || |||||||||||||| |||||||| ||| |||||| ||||    
T  2133302 acaaatattttaaacgagacccattaattatctatcaataactctatatcattacattttaatattttaat 2133372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 42536 - 42487
Alignment:
Q  14 atatcatacaaatttcttaaacgagactcattaatcatttatcaataact 63  Q
    ||||| ||||||||||||||||| ||||| |||||||| |||||||||||    
T  42536 atatcttacaaatttcttaaacgggactctttaatcatctatcaataact 42487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5419 times since January 2019
Visitors: 5757