View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_30 (Length: 452)
Name: NF0816_high_30
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 42309141 - 42309552
Alignment:
| Q |
1 |
atttgttctgataccacatatatttttcaggttgtgattttcatagcaatggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309141 |
atttgttctgataccacatatatttttcaggttgtgattttcgtagcaatggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaag |
42309240 |
T |
|
| Q |
101 |
agaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309241 |
agaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactc |
42309340 |
T |
|
| Q |
201 |
aaaaaccaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42309341 |
aaaaaccaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttccaattccagcaattagagataagaagtatcatca |
42309440 |
T |
|
| Q |
301 |
tcaacatcatgtcatgacccaactaggagactttttattttgtgaaaaagccaaagttttcaatgtagtggtttcagggtactaatatttccatttacct |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309441 |
tcaaca-----tcatgacccaactaggagactttttattttgtgaaaaaaccaaagtgttcaatgtagtggtttcagggtactaatatttccatttacct |
42309535 |
T |
|
| Q |
401 |
tcttttatctattttag |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
42309536 |
tcttttatctattttag |
42309552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 10284509 - 10284371
Alignment:
| Q |
92 |
taatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgc |
191 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
10284509 |
taatgaaagataatgaaaagctaaggaagaaatatgagattctgaacaaagagaatcaagcacttgcatctcagctcaaacaaaaattctcaaatggtgc |
10284410 |
T |
|
| Q |
192 |
tggtaactcaaaaaccaatgcaccaaacaacatgcttga |
230 |
Q |
| |
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| ||||||| ||||||||||| ||||||||||||||||| |
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| T |
10284409 |
tagtaactccaaaaccaatgctccaaacaacatgcttga |
10284371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 42312432 - 42312561
Alignment:
| Q |
66 |
agagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcag |
165 |
Q |
| |
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||||||||||||| |||| ||||||||||| ||||||||||||| | | |||| ||||| |||| || ||||||||| |||||||| |||||||||| |
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| T |
42312432 |
agagttgtactacaaaaattgtcacataataaaagagaatgaaatgttaaggaggaaaggtcaacttttgaatcaag---atcaagcatttttgtctcaa |
42312528 |
T |
|
| Q |
166 |
cttaaacaaaagctctcaaatggtgctggtaac |
198 |
Q |
| |
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|| ||||| | | |||||| ||||||| ||||| |
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|
| T |
42312529 |
ctcaaacagatgttctcaattggtgctagtaac |
42312561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 10284352 - 10284286
Alignment:
| Q |
237 |
ccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatcatca |
303 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||| || |||||| | ||| || | |||||||||| |
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|
| T |
10284352 |
ccttggttcaggttcaagtcaaaatccttcaaatttcaacaattacatatatgaggcatcatcatca |
10284286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 17171662 - 17171470
Alignment:
| Q |
49 |
atggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatc |
148 |
Q |
| |
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||||||| || ||||| |||||||||| | |||| |||| | |||||||||||||||||| | | |||| ||||||| || |||| | | ||||||| | |
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| T |
17171662 |
atggaaaaatcgaacagagagttgtacaagaaaaattgtcgcttaatgaaagagaatgaaaagttgaggaggaaagctgaatttctaagtgaagagaaac |
17171563 |
T |
|
| Q |
149 |
aagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttg |
241 |
Q |
| |
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|| ||||||| | |||||| ||||||||| |||||||||||||| ||||||| ||||||||||| | || |||||||||||| |||||||||| |
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| T |
17171562 |
aaacacttttatatcagctcaaacaaaagttctcaaatggtgctagtaactccaaaaccaatgctcgaagcaacatgcttgatcttaaccttg |
17171470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 17176470 - 17176278
Alignment:
| Q |
49 |
atggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatc |
148 |
Q |
| |
|
||||||| || ||||| |||||||||| | ||||||||| | |||||||||||||||||| | | |||| ||||||| || |||| | ||||||| | |
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|
| T |
17176470 |
atggaaaaatcgaacagagagttgtacaagaaaaactgtcgcttaatgaaagagaatgaaaagttgaggaggaaagctgaacttctacgtgaagagaaac |
17176371 |
T |
|
| Q |
149 |
aagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttg |
241 |
Q |
| |
|
|| ||||||| | |||||| ||||||||| |||||| ||||||| ||||||| ||||||||||| | || |||||||||||| |||||||||| |
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|
| T |
17176370 |
aaacacttttatatcagctcaaacaaaagttctcaattggtgctagtaactccaaaaccaatgctcgaagcaacatgcttgatcttaaccttg |
17176278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 17166867 - 17166686
Alignment:
| Q |
61 |
aacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgt |
160 |
Q |
| |
|
|||| |||||||||| | |||| |||| | |||||||||| ||||||| | | |||||||||| | || |||| | | ||||||| ||| ||||||| | |
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| T |
17166867 |
aacagagagttgtacaagaaaaattgtcgcttaatgaaagaaaatgaaaagttgaggaagaaagttgaacttctaagtgaagagaaacaaacacttttat |
17166768 |
T |
|
| Q |
161 |
ctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttgg |
242 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||||||| |||||| |||| |||||||||||| |||| ||||||||||| |
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|
| T |
17166767 |
ctcagctcaaacaacagatctcaaatggtgctagtaactccaaaaccgatgctccaaacaacatgattgatcttaaccttgg |
17166686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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