View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_33 (Length: 420)
Name: NF0816_high_33
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 41918014 - 41918396
Alignment:
| Q |
11 |
cagagaaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918014 |
cagaggaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaat |
41918113 |
T |
|
| Q |
111 |
atttcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918114 |
atttcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaat |
41918213 |
T |
|
| Q |
211 |
gtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918214 |
gtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagt |
41918313 |
T |
|
| Q |
311 |
ttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918314 |
ttggtaaaactcttgcccccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttg |
41918396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 1686888 - 1687262
Alignment:
| Q |
9 |
agcagagaaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttgga |
108 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| | |||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1686888 |
agcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttgtt |
1686987 |
T |
|
| Q |
109 |
atatttcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaa |
208 |
Q |
| |
|
| ||||||| || ||||| || | || |||||||||| | |||||| |||||||||| ||||| |||| ||||||||| |||||||||| || ||| |
|
|
| T |
1686988 |
aaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaatacaattcactacaaagttaccaaaaa |
1687087 |
T |
|
| Q |
209 |
atgtcttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataa |
308 |
Q |
| |
|
||| ||||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
1687088 |
atgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaataa |
1687187 |
T |
|
| Q |
309 |
gtttggtaaaactcttgcccccgtttgcaaagggcaagagatcaaaaagttttgttacgaagagaaaatgttgga |
383 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| | |||||||||| |||| ||| |||||| |||||||||| |
|
|
| T |
1687188 |
atttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttgga |
1687262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5349 times since January 2019
Visitors: 5756