View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_35 (Length: 399)
Name: NF0816_high_35
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 12956839 - 12956454
Alignment:
| Q |
10 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
109 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956839 |
tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
12956740 |
T |
|
| Q |
110 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
12956739 |
caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca |
12956640 |
T |
|
| Q |
210 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956639 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaatcgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
12956540 |
T |
|
| Q |
310 |
catgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12956539 |
catgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttc |
12956454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 12931037 - 12930652
Alignment:
| Q |
10 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
109 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||| || |
|
|
| T |
12931037 |
tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc |
12930938 |
T |
|
| Q |
110 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
209 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12930937 |
caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca |
12930838 |
T |
|
| Q |
210 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
309 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930837 |
tttgcaatcgaagtagggattggacctgagaattgatttgctgcaaaagcgaatatttgaatattggggagggtgtggaacatgttgggtggaaaagagc |
12930738 |
T |
|
| Q |
310 |
catgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12930737 |
catgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttc |
12930652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 12947395 - 12947017
Alignment:
| Q |
17 |
agatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaattt |
116 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
12947395 |
agatatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaactt |
12947296 |
T |
|
| Q |
117 |
agattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaa |
216 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12947295 |
aggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaa |
12947196 |
T |
|
| Q |
217 |
tcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaag |
316 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12947195 |
ttgaaataggaattggacctgagaattgatttgctccaaaatagaatagttcaagattggggagggtgtggaacatgttgggtgcaaaagagccatgaag |
12947096 |
T |
|
| Q |
317 |
gttattctgtgttattgtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
|| |||| |||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12947095 |
gtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttc |
12947017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 394
Target Start/End: Complemental strand, 12905923 - 12905564
Alignment:
| Q |
35 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||||||| |||| |
|
|
| T |
12905923 |
tagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgt |
12905824 |
T |
|
| Q |
135 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
234 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12905823 |
aaattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggac |
12905724 |
T |
|
| Q |
235 |
ctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattctgtgttattgt |
334 |
Q |
| |
|
| ||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||| | | | | |
|
|
| T |
12905723 |
cagagaattgatttgatgcaaaatgtaataatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttcttccaccgc |
12905624 |
T |
|
| Q |
335 |
gaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgtt |
394 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12905623 |
aagggtaataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtt |
12905564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 35 - 394
Target Start/End: Complemental strand, 12898302 - 12897942
Alignment:
| Q |
35 |
tagtttactgcaattagtcaaatattttagaaattctaaa-tccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttg |
133 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || |||| ||||| ||||||||| ||| |
|
|
| T |
12898302 |
tagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttg |
12898203 |
T |
|
| Q |
134 |
taaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattgga |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
12898202 |
taaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagcaatcgaaataggaattgga |
12898103 |
T |
|
| Q |
234 |
cctgagaattgatttgctgcaaaa-gtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattctgtgttatt |
332 |
Q |
| |
|
|| |||||||||||| || ||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
12898102 |
ccagagaattgatttcctccaaaatgtaaaaattt-aagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgcc |
12898004 |
T |
|
| Q |
333 |
gtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgtt |
394 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12898003 |
gaaagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgtt |
12897942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 17924854 - 17925239
Alignment:
| Q |
10 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
109 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| | | ||||||||||||| || |
|
|
| T |
17924854 |
tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc |
17924953 |
T |
|
| Q |
110 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
209 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||| |
|
|
| T |
17924954 |
caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg |
17925053 |
T |
|
| Q |
210 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagc |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17925054 |
tttgcaatcgaaaaagggattggacctgagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagc |
17925153 |
T |
|
| Q |
310 |
catgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
| ||| |||||| ||| | | ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
17925154 |
cgagaaagttattttgttccaccgcaagggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttc |
17925239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 37 - 273
Target Start/End: Original strand, 10764610 - 10764843
Alignment:
| Q |
37 |
gtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaa |
136 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||||||||| || ||| ||| ||||||||||||| || ||||||||| | ||||| |||||| |
|
|
| T |
10764610 |
gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa |
10764709 |
T |
|
| Q |
137 |
attcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacct |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||| |||||| ||||| || ||||| | ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10764710 |
attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacct |
10764806 |
T |
|
| Q |
237 |
gagaattgatttgctgcaaaagtgaatatttgaagat |
273 |
Q |
| |
|
|||||||||||| || ||||| | ||||||| ||||| |
|
|
| T |
10764807 |
gagaattgatttcctccaaaatttaatattttaagat |
10764843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 10610468 - 10610091
Alignment:
| Q |
10 |
tattatgagatatcgaaagtgtgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg |
109 |
Q |
| |
|
|||||| |||||| ||||| | | ||||||||| || || ||||||||||||| ||| |||||||| ||||||||| ||||||| |||| ||| ||| |
|
|
| T |
10610468 |
tattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattc |
10610369 |
T |
|
| Q |
110 |
caaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagca |
209 |
Q |
| |
|
|||| | || | |||||||| |||| ||| |||||||||||||||||||||||||||| ||| | ||||| || | || |||||||| ||||||| |
|
|
| T |
10610368 |
caaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaaatt---gttttgacctaaatcaattatttgtagggaagaagca |
10610272 |
T |
|
| Q |
210 |
tttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagt---gaatatttgaagattggggagggtgtggaacatgttgggtggaaaag |
306 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| || | | || || ||||| ||||| |||||||||| |||||||||||||||| | |
|
|
| T |
10610271 |
tttgcaatggaaacagggattggacctgagaattgatttcctcc--aggttcaaaagatttg-agattagggagggtgtaaaacatgttgggtggaagtg |
10610175 |
T |
|
| Q |
307 |
agccatgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaat |
390 |
Q |
| |
|
|||||| || ||||| |||| || ||| || |||||| ||||||||| |||||||||| ||||||| |||| ||||||| |
|
|
| T |
10610174 |
agccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaaggaatcataccagacaaat |
10610091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 10563760 - 10563547
Alignment:
| Q |
35 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
134 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||| |||||||| ||| ||||| |||||||||||||||| || ||| |||| | ||||||||||| |
|
|
| T |
10563760 |
tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgt |
10563661 |
T |
|
| Q |
135 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
234 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||| ||| | ||||||| | ||||||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
10563660 |
aacttctctagacttggaacttgtcccaccaaata---gttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac |
10563564 |
T |
|
| Q |
235 |
ctgagaattgatttgct |
251 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10563563 |
ctgagaattgatttgct |
10563547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 395
Target Start/End: Original strand, 10748491 - 10748848
Alignment:
| Q |
35 |
tagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgt |
134 |
Q |
| |
|
||||||||| ||||| |||||||| |||| ||| |||||||| ||||||||| ||||||| |||| ||| || ||||||||| | ||||||||||| |
|
|
| T |
10748491 |
tagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgt |
10748590 |
T |
|
| Q |
135 |
aaattcgctagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggac |
234 |
Q |
| |
|
|| ||| |||||||||||||||| || ||||||| ||| | ||||||| | || |||||||| |||||||||| |||| |||||||| |||| || |
|
|
| T |
10748591 |
aacttctctagacttggaacttgccccaccaaat---agttttgagctaagtcaagtaattgtagggaagaagcatttacaatggaaataggcattgaac |
10748687 |
T |
|
| Q |
235 |
ctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattctgtgttattgt |
334 |
Q |
| |
|
| |||| |||||| | ||| ||| || | ||||||||||| |||| ||||| ||||| ||||| ||||||| || ||||| | |||| || |
|
|
| T |
10748688 |
caaagaactgattttttccaatttggaacatgttgagattggggagagtgttgaacaagttggatggaagagagccaataaatttattttcggttagtga |
10748787 |
T |
|
| Q |
335 |
gaggccaataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
||| | | ||||||||||||||||||||||||| ||||| | |||| |||||||||||| |
|
|
| T |
10748788 |
gagttgagttagtgatgagatattataaagacaagaaggaaacataccagacaaattgttc |
10748848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 10742185 - 10742388
Alignment:
| Q |
45 |
caattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgcta |
144 |
Q |
| |
|
||||| ||||||||| ||| ||| |||||| || | |||| |||||||||||||||| || |||||||||| | |||||| ||||| ||| | | |
|
|
| T |
10742185 |
caatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgttagactgcaaatttaatctttgaagatcctgtaacttcccaa |
10742284 |
T |
|
| Q |
145 |
gacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatacttgtagggcagaagcatttgcaatcgaaatagggattggacctgagaattg |
244 |
Q |
| |
|
|| |||||||||||||||||||||| | | | ||||| || | | ||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10742285 |
gatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattggacctgtgaattg |
10742384 |
T |
|
| Q |
245 |
attt |
248 |
Q |
| |
|
|||| |
|
|
| T |
10742385 |
attt |
10742388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 10218434 - 10218539
Alignment:
| Q |
270 |
agattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaag |
369 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||| || ||||||| ||||| |||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
10218434 |
agattggggagggcatgaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag |
10218533 |
T |
|
| Q |
370 |
taggaa |
375 |
Q |
| |
|
||||| |
|
|
| T |
10218534 |
aaggaa |
10218539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 10764875 - 10764930
Alignment:
| Q |
340 |
caataagtgatgagatattataaagacaagtaggaatcttaccggacaaattgttc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10764875 |
caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttc |
10764930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 11049623 - 11049722
Alignment:
| Q |
270 |
agattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattctgtgttattgtgaggccaataagtgatgagatattataaagacaag |
369 |
Q |
| |
|
|||||||||| || || |||||||||||||||| |||||||| || ||||||| ||||| |||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
11049623 |
agattggggaaggcatgaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag |
11049722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 7191579 - 7191464
Alignment:
| Q |
197 |
tagggcagaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaag-tgaatatttgaagattggggagggtgtggaacatgtt |
295 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||| |||||||||||||||| || | | | | |||| ||||||||||| |||||||| |||||| || |
|
|
| T |
7191579 |
tagggaagaagcatttgaaatggaaatagggattgtacctgagaattgatttcctccgattgctaaata-ttgaagattggagagggtgttgaacatatt |
7191481 |
T |
|
| Q |
296 |
gggtggaaaagagccat |
312 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
7191480 |
gggtggaagagatccat |
7191464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 292
Target Start/End: Original strand, 10653765 - 10653932
Alignment:
| Q |
125 |
aagatcttgtaaattcgctagacttggaacttgtccaaccaaattcatgttgtttcc-taagtctaatacttgtagggcagaagcatttgcaatcgaaat |
223 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| | |||||| || ||| | |||||| | | ||| ||||| ||||||||||||||| ||||| |
|
|
| T |
10653765 |
aagatcatgtaaattccccagacttggaacttgtccgagcaaatt-attttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaat |
10653863 |
T |
|
| Q |
224 |
agggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacat |
292 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||| | ||| ||||||||||| ||||||| |||||| |
|
|
| T |
10653864 |
agggattgtacctgagaattgattggatgcaatatagaaacattgaagattggaaagggtgttgaacat |
10653932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 10718431 - 10718508
Alignment:
| Q |
92 |
acctaaattgtttgattgcaaatttagattggaaagatcttgtaaattcgctagacttggaacttgtccaaccaaatt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| | | ||| |||||||||||||||||||||||| |
|
|
| T |
10718431 |
acctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaatt |
10718508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 10599656 - 10599548
Alignment:
| Q |
203 |
agaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtgga |
302 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||||| ||||| | | | || || ||| ||||||||||| |||| |||||| ||||||||| |
|
|
| T |
10599656 |
agaagcatttgaaattgaagtagggattggacctgagaatttatttgatccgaccgtaaaatattggagattggggagagtgtagaacatattgggtgga |
10599557 |
T |
|
| Q |
303 |
aaagagcca |
311 |
Q |
| |
|
| ||||||| |
|
|
| T |
10599556 |
agagagcca |
10599548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 10603321 - 10603213
Alignment:
| Q |
203 |
agaagcatttgcaatcgaaatagggattggacctgagaattgatttgctgcaaaagtgaatatttgaagattggggagggtgtggaacatgttgggtgga |
302 |
Q |
| |
|
||||||||| | ||| ||| | |||||||||||| |||||||||||| | ||| || || ||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10603321 |
agaagcattcgaaattgaagtggggattggacctaagaattgatttgatccaactgtaaaatattggagattggggagagtgtggaacatattgggtgga |
10603222 |
T |
|
| Q |
303 |
aaagagcca |
311 |
Q |
| |
|
| ||||||| |
|
|
| T |
10603221 |
agagagcca |
10603213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 10557421 - 10557379
Alignment:
| Q |
270 |
agattggggagggtgtggaacatgttgggtggaaaagagccat |
312 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10557421 |
agattggggagggagttgaacatgttgggtggaagagagccat |
10557379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 10661721 - 10661771
Alignment:
| Q |
198 |
agggcagaagcatttgcaatcgaaatagggattggacctgagaattgattt |
248 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||| |||| |||| |
|
|
| T |
10661721 |
agggaagaagcatttgcaatggaaatagggattgtacctgaaaattcattt |
10661771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 7191648 - 7191604
Alignment:
| Q |
125 |
aagatcttgtaaattcgctagacttggaacttgtccaaccaaatt |
169 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
7191648 |
aagatcatgtaacttccctagacttggaacttgtccgaccaaatt |
7191604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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