View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_4 (Length: 771)
Name: NF0816_high_4
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 340 - 559
Target Start/End: Complemental strand, 31949328 - 31949107
Alignment:
| Q |
340 |
atcagaaatagatgtcgatttgcaaagatgattgtgacccaagcaccacccaaa-tcccataaaagttcttcaaaaatgtccaaccatcagtaaaataga |
438 |
Q |
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| T |
31949328 |
atcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctctttaaaaatgtccaaccatcagtaaaataaa |
31949229 |
T |
|
| Q |
439 |
ctttcccgctcttc-ttttcaacagctaccacgacctcattgcggttaggatcgtgcaacatcagaaatggagcaacttttaaccaaaagcctcttgcaa |
537 |
Q |
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| T |
31949228 |
ccctcccgttcttctttttcaatagctaccttaacctcattctggttcggatcacgtaacaacacaaacgaagcaacttgtagaccaaaccctcttgcaa |
31949129 |
T |
|
| Q |
538 |
agcaagcaggcagccttccctt |
559 |
Q |
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| ||| ||| ||||||||||| |
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| T |
31949128 |
acgaagaaggaagccttccctt |
31949107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 353 - 558
Target Start/End: Original strand, 42091784 - 42091990
Alignment:
| Q |
353 |
gtcgatttgcaaagatgattgtgacccaagcaccacccaaa-tcccataaaagttcttcaaaaatgtccaaccatcagtaaaatagactttcccgctctt |
451 |
Q |
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| T |
42091784 |
gtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaacagcccaaccatcatcaaaataaactttcccgttcct |
42091883 |
T |
|
| Q |
452 |
cttttcaacagctaccacgacctcattgcggttaggatcgtgcaacatcagaaatggagcaacttttaaccaaaagcctcttgcaaagcaagcaggcagc |
551 |
Q |
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| T |
42091884 |
cttttccacagctacctcaatctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaaaccaaaccctcttgcaaagcatgcaggcagc |
42091983 |
T |
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| Q |
552 |
cttccct |
558 |
Q |
| |
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|| |||| |
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| T |
42091984 |
ctaccct |
42091990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 31949537 - 31949440
Alignment:
| Q |
131 |
aactcaccaacattcctgaagtaacatcagcagatgttaattgtttgacaattgtgtgacagaagacaatgggaagaaaaaatgcattagaaccatat |
228 |
Q |
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| T |
31949537 |
aactcaccaacactccagaagaaatgtccgcagctgttaactccttgacaattgtgtgatagaaaacagtgggaggaaaaatggcattagaaccatat |
31949440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 456
Target Start/End: Complemental strand, 39210358 - 39210218
Alignment:
| Q |
316 |
tctccattcagattcctaacttcaatcagaaatagatgtcgatttgcaaagatgattgtgacccaagcacca-cccaaatcccataaaagttcttcaaaa |
414 |
Q |
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||||||| || |||||||||||||| |||||| || |||||||||||||| |||| |||| ||||| |||| || ||| | ||||||| ||||| |||| |
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| T |
39210358 |
tctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaa-ttctttaaaa |
39210260 |
T |
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| Q |
415 |
atgtccaaccatcagtaaaatagactttcccgctcttctttt |
456 |
Q |
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| T |
39210259 |
atgtccaaccgtcagtaaaatagactttcacgttcctctttt |
39210218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 702 - 742
Target Start/End: Original strand, 26452074 - 26452114
Alignment:
| Q |
702 |
accaataagttatattatatatttttattgatattaaataa |
742 |
Q |
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| T |
26452074 |
accaataagttatattatatattttcattgatattgaataa |
26452114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 327 - 456
Target Start/End: Original strand, 27510642 - 27510772
Alignment:
| Q |
327 |
attcctaacttcaatcagaaatagatgtcgatttgcaaagatgattgtgacccaagcaccacccaaat-cccataaaagttcttcaaaaatgtccaacca |
425 |
Q |
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| T |
27510642 |
attcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattctttaaaaatgtccaaccg |
27510741 |
T |
|
| Q |
426 |
tcagtaaaatagactttcccgctcttctttt |
456 |
Q |
| |
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| T |
27510742 |
tcagtaaaatagactttctcgttcctctttt |
27510772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 559
Target Start/End: Complemental strand, 10714701 - 10714655
Alignment:
| Q |
513 |
acttttaaccaaaagcctcttgcaaagcaagcaggcagccttccctt |
559 |
Q |
| |
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| T |
10714701 |
acttctaacccaaatcctcttgcaaagcaagcaggcagccttccctt |
10714655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 562
Target Start/End: Original strand, 23342171 - 23342450
Alignment:
| Q |
284 |
gaggagggttaagtcgaggatactgcacttcctctccattcagattcctaacttcaatcagaaatagatgtcgatttgcaaagatgattgtgacccaagc |
383 |
Q |
| |
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||||||| | ||| |||||||| | || ||| |||||| |||||||| || |||||||| || |||||||| || ||||| |||| ||| |||||| | |
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| T |
23342171 |
gaggaggatcaaggcgaggatattccaattcacctccatagagattcctcacctcaatcaggaaaagatgtcggttggcaaatatgaatgtaacccaacc |
23342270 |
T |
|
| Q |
384 |
accacccaa-atcccataaaagttcttcaaaaatgtccaaccatcagtaaaatagactttcccgctcttcttttcaacagctaccacgacctcattgcgg |
482 |
Q |
| |
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|||| |||| || |||||||| |||||| ||| ||||||||||||| |||||| |||||||| |||||||| || | || ||| ||| |||||| || |
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| T |
23342271 |
accagccaatatgccataaaaagtcttcagaaacgtccaaccatcagcaaaataaactttcccactcttcttctcgattgcaacctcgatctcattctgg |
23342370 |
T |
|
| Q |
483 |
ttaggatcgtgcaacatcagaaatggagc-aacttttaaccaaaagcctcttgcaaagcaagcaggcagccttcccttacg |
562 |
Q |
| |
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| T |
23342371 |
ttttgatcacgcaacatagcatatggccctacctgtaaaccaaaag-ctcttgcaaagcaagcaggcagtcttcccttacg |
23342450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 704 - 742
Target Start/End: Complemental strand, 28928864 - 28928826
Alignment:
| Q |
704 |
caataagttatattatatatttttattgatattaaataa |
742 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
28928864 |
caataagttatattatatatttctattgatgttaaataa |
28928826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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