View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_40 (Length: 369)
Name: NF0816_high_40
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43811981 - 43811628
Alignment:
| Q |
1 |
ccatactttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatggcagcgtcgatacatgtagacttaaagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
43811981 |
ccatactttttataaaacattcctttcgatatttttcaaaatataataacacatcttctaattgttttatggcagcgtcgatacatgtagacttaaagca |
43811882 |
T |
|
| Q |
101 |
cattctaaaaatattaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43811881 |
cattctaaaaatattaataggaaataaaatatcatatcaaacaaacatagcaagtaaaaatttaaagctttcatctgtattaatcaaactctccctctca |
43811782 |
T |
|
| Q |
201 |
ttctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43811781 |
ttctttgcctttacattattatcacaacattcatataattttgacaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatt |
43811682 |
T |
|
| Q |
301 |
tgaatttccaaacgagtattagacaaatatttgatagcaagctaaattttccat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43811681 |
tgaatttccaaacgagtattagacaaatatttgatagcaagctaaattttccat |
43811628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 332
Target Start/End: Original strand, 32176818 - 32177152
Alignment:
| Q |
3 |
atactttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatggcagcgtcgatacatgtagacttaaagtaca |
102 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||| |||| || ||| |||||||||||| || |||||| | | |||||| | | || |
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| T |
32176818 |
atactttttgtaaaaccttcctttcgatattttttaaaatatgacaacatattttccaattgttttatggtagagtcgatgctcatggacttagattgca |
32176917 |
T |
|
| Q |
103 |
------ttctaaaaatattaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccct |
196 |
Q |
| |
|
| |||| | | |||| || ||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |
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|
| T |
32176918 |
actttttgctaacagtgttaacagcaaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgc |
32177017 |
T |
|
| Q |
197 |
ctcattctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatctt |
296 |
Q |
| |
|
|||| |||||| |||| ||| |||||||||| |||||||||||| || ||||| |||||||||| ||||||| |||||||||| |||| || | |||| |
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|
| T |
32177018 |
ctcactctttgtctttgcatcattatcacaagattcatataattctgacaaagccaatcttatttggggacattgaaatctaatggctttgac-actctt |
32177116 |
T |
|
| Q |
297 |
aatttgaatttccaaacgagtattagacaaatattt |
332 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||| |
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|
| T |
32177117 |
aattcgactttcccaacgagtattagacaaatattt |
32177152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 332
Target Start/End: Complemental strand, 9959383 - 9959049
Alignment:
| Q |
3 |
atactttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatggcagcgtcgatacatgtagacttaaagtaca |
102 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| |||| || ||| ||||||||||| || |||||| | | |||||| | | || |
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|
| T |
9959383 |
atactttttgtaaaaccttcctttcgatatttttcaaaatatgacaacatattttccaattgttttatgatagagtcgatgctcatggacttagattgca |
9959284 |
T |
|
| Q |
103 |
------ttctaaaaatattaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccct |
196 |
Q |
| |
|
| | || | | |||| || ||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |
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|
| T |
9959283 |
actttttgccaacagtgttaacagcaaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgc |
9959184 |
T |
|
| Q |
197 |
ctcattctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatctt |
296 |
Q |
| |
|
|||| |||||| |||| ||| |||||||||| |||||||||||| | ||||| |||||||||| ||||||| |||||||||| |||| || | |||| |
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|
| T |
9959183 |
ctcactctttgtctttgcatcattatcacaagattcatataattccgacaaagccaatcttatttggggacattgaaatctaatggctttgac-actctt |
9959085 |
T |
|
| Q |
297 |
aatttgaatttccaaacgagtattagacaaatattt |
332 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
9959084 |
aattcgactttcccaacgaatattagacaaatattt |
9959049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 12382027 - 12381697
Alignment:
| Q |
7 |
tttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatggcagcgtcgatacatgtagacttaaagtaca---- |
102 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||| |||| || ||| |||||||||||| || |||||| | |||||| | | || |
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|
| T |
12382027 |
tttttgtaaaaccttcatttcgatatttttcaaaatatgacaacatattttccaattgttttatggtagagtcgatgttcatggacttagattgcaactt |
12381928 |
T |
|
| Q |
103 |
--ttctaaaaatattaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctca |
200 |
Q |
| |
|
|||||| | | ||||||| ||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |||| |
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|
| T |
12381927 |
ttttctaacagtgttaatagcaaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgcctca |
12381828 |
T |
|
| Q |
201 |
ttctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatt |
300 |
Q |
| |
|
|||||| |||| ||| |||||||||| |||||||||||| | ||||| |||||||||| ||||||| |||||||||| |||| || | |||||||| |
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|
| T |
12381827 |
ctctttgtctttgcatcattatcacaagattcatataattcagacaaagccaatcttatttggggacattgaaatctaatggctttgac-actcttaatt |
12381729 |
T |
|
| Q |
301 |
tgaatttccaaacgagtattagacaaatattt |
332 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| |
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|
| T |
12381728 |
cgactttcccaacgagtattagacaaatattt |
12381697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 39534544 - 39534656
Alignment:
| Q |
178 |
tattaatcaaactctccctctcattctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatct |
277 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||| | ||||| ||||||||| ||||| | |||||| |
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|
| T |
39534544 |
tattaatcaaactctccacaccactctttgtatttacatcattatcacaacattcatataattctaacaaagccgatcttatttggggacaatgaaatct |
39534643 |
T |
|
| Q |
278 |
aatgactttaaca |
290 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
39534644 |
aataactttaaca |
39534656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 10056004 - 10056074
Alignment:
| Q |
2 |
catactttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatgg |
72 |
Q |
| |
|
|||| ||||| |||||| | ||||| ||| |||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10056004 |
catattttttgtaaaacttaccttttaatagttttcaaaatatgataacacatattctaattgttttatgg |
10056074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 39534425 - 39534497
Alignment:
| Q |
7 |
tttttataaaacattcctttcgatatttttcaaaatatgataacacatcttctgattgttttatggcagcgtc |
79 |
Q |
| |
|
||||| |||||| | ||||| |||| |||||||||||||||| || | |||| |||||||||||| |||||| |
|
|
| T |
39534425 |
tttttgtaaaacctaccttttgatagttttcaaaatatgatagcatagattctaattgttttatggtagcgtc |
39534497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 42157966 - 42158039
Alignment:
| Q |
218 |
attatcacaacattcatataattttggcaaagttaatctt-atttaaggacattaaaatctaatgactttaaca |
290 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||| ||||||| | ||| |||||||||| |||||||| |
|
|
| T |
42157966 |
attatcacaacattcatataatttcgataaagtcaatcttcatttaagaatattgaaatctaatggctttaaca |
42158039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 45186921 - 45186965
Alignment:
| Q |
6 |
ctttttataaaacattcctttcgatatttttcaaaatatgataac |
50 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
45186921 |
ctttttgtaaaaccttcctatcgatatttttcaaaatatgataac |
45186965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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