View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_41 (Length: 366)
Name: NF0816_high_41
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 42309164 - 42308907
Alignment:
| Q |
13 |
aatatatgtggtatcagaacaaatgagaaaggtaaaaatatttgtaaata----ttcatcacatcgtgtaaaacatgaagaaggtgtatgagtgagtatg |
108 |
Q |
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| T |
42309164 |
aatatatgtggtatcagaacaaatgagaaaggtaaaaatatttgtaaataaatattcatcacatcgtgtaaaacatgaag---gtgtatgagtgagtatg |
42309068 |
T |
|
| Q |
109 |
attgnnnnnnngcaaaaggaaatgtcatcattaataaaattagtataactaaatatttttacaagcttccttgtgaatgtgttgctttatggtttgcttt |
208 |
Q |
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| T |
42309067 |
attgaaaaaaagcaaaaggaaatgtcatcattaataaaattagtataactaaatatttttacaagcttccttgtgaatgtgttgctttatggtttgcttt |
42308968 |
T |
|
| Q |
209 |
ggtagaaacaattatgacatttaaacaaagaaatcaactaccatgggggaaaaaagtatat |
269 |
Q |
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| T |
42308967 |
ggtagaaacaattatgacatttaaacaaagaaatcaactaccatgggggaaaaaagtatat |
42308907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 26250479 - 26250531
Alignment:
| Q |
188 |
tgttgctttatggtttgctttggtagaaacaattatgacatttaaacaaagaa |
240 |
Q |
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| T |
26250479 |
tgttgctttatgatttactttggtagatataattatgacacataaacaaagaa |
26250531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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