View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_42 (Length: 365)
Name: NF0816_high_42
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 32 - 360
Target Start/End: Original strand, 9237359 - 9237687
Alignment:
| Q |
32 |
tcactcaaccataacaataacgactctaattgccaccaacaagcatacgaaatagacaaatggtaaatacgatgtcatgactcgtggctgctttagctaa |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
9237359 |
tcactgaaccataacaataacgactctaattgccaccaacaagcatacgaaatagacaaatggtaaatatgatgtcatgactcgtgactgctttagctaa |
9237458 |
T |
|
| Q |
132 |
agagatagagaaagaagaaaatggatcccatgcagaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9237459 |
agagatagagaaagaagaaaatggatcccatgcagaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaa |
9237558 |
T |
|
| Q |
232 |
atattaagtctcacctgtctgtttctcaacagtcaacaaaataatgaagtaacttggtgtacaaatccattcatgcaaaaagttcacagaatgtggtcgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9237559 |
atattaagtctcacctgtctgtttctcaacagtcaacaaaataatgaagtaacttggtgtacaaatccattcatgcaaaaagttcacagaatgtggtcgt |
9237658 |
T |
|
| Q |
332 |
tttcatccagatattaatagcatcatcat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9237659 |
tttcatccagatattaatagcatcatcat |
9237687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6864 times since January 2019
Visitors: 5772