View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_43 (Length: 364)
Name: NF0816_high_43
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 35697557 - 35697200
Alignment:
| Q |
7 |
gaaacaaaggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgcatcacaaccattaaaattaccaattaatt |
106 |
Q |
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| T |
35697557 |
gaaacaaaggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgaatcacaaccataaaaattaccaattaatt |
35697458 |
T |
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| Q |
107 |
ttacaacaagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggcttattagtgctaccactcttcttatggttacccc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35697457 |
ttacaacaagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggtttattagtgctaccactcttcttatggttacccc |
35697358 |
T |
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| Q |
207 |
ctccacaagttattgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgatgcttacctttacctttccctttcgt |
306 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35697357 |
ctccgcaagttatcgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgattcttacctttacctttccctttcgt |
35697258 |
T |
|
| Q |
307 |
ttgtttcccagttttcttcacactatcattattattattccccaaatgatcataaacc |
364 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35697257 |
ttgtttcccagttttcttcacactaccattattattattccccaaatgatcataaacc |
35697200 |
T |
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