View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_44 (Length: 363)
Name: NF0816_high_44
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 33 - 353
Target Start/End: Original strand, 35696718 - 35697038
Alignment:
| Q |
33 |
gatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatg |
132 |
Q |
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| T |
35696718 |
gatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatg |
35696817 |
T |
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| Q |
133 |
acaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntgattcgacgattaatgattatgtttataatcctaa |
232 |
Q |
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| T |
35696818 |
acaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatgattcgacgattaatgattatgtttataatcctaa |
35696917 |
T |
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| Q |
233 |
tggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggat |
332 |
Q |
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| T |
35696918 |
tggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggat |
35697017 |
T |
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| Q |
333 |
gttggaccttcaccgtctgtg |
353 |
Q |
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| T |
35697018 |
gttggaccttcaccgtctgtg |
35697038 |
T |
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