View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_50 (Length: 352)
Name: NF0816_high_50
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 41 - 337
Target Start/End: Complemental strand, 15579004 - 15578707
Alignment:
| Q |
41 |
tttgttatttgttatttgatattataatat--gactgcagtcagttttggcattttataaggattaagccccataaaatattagaaaaccactaatatga |
138 |
Q |
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| T |
15579004 |
tttgttatttgttatttgatattataatatatgactgcagtcagttttggcattctataaggattaagccccataaaatattagaaaaccactaatatga |
15578905 |
T |
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| Q |
139 |
atttctcctaaaagtgaaggctattatatccttatatcgtgagggctgatataaataatcgggctatgaagaattgacattttagattgaaagtaagttt |
238 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | |||||| |
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| T |
15578904 |
atttctcc-aaaagtgaaggctattatatccttatatcgtgagggctgatataaatcttcgggctatgaagtattgatattttagattgaaggcaagttt |
15578806 |
T |
|
| Q |
239 |
agtactcgacagacatgacatcgacatttataatacatctaatcacttctaatttatctaattttaacttgtatctatgagttggtgtcttgtttgtgt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15578805 |
agtactcgacagacatgacatcgacatttataatacatctaatcacttttaatttatctaattttaacttgtatctatgagttggtgtcttgtttgtgt |
15578707 |
T |
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