View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_54 (Length: 338)

Name: NF0816_high_54
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_54
NF0816_high_54
[»] chr1 (15 HSPs)
chr1 (1-196)||(7888669-7888864)
chr1 (1-196)||(7890934-7891129)
chr1 (194-327)||(18705708-18705841)
chr1 (16-196)||(45993382-45993562)
chr1 (16-196)||(43045209-43045389)
chr1 (16-196)||(43045662-43045842)
chr1 (16-196)||(43066565-43066745)
chr1 (16-196)||(43084090-43084270)
chr1 (16-196)||(38137750-38137930)
chr1 (16-196)||(45983602-45983776)
chr1 (79-196)||(3301008-3301125)
chr1 (70-188)||(51291885-51292003)
chr1 (16-189)||(40034595-40034762)
chr1 (194-233)||(2427330-2427369)
chr1 (128-188)||(43076686-43076746)
[»] chr8 (9 HSPs)
chr8 (1-196)||(1846592-1846787)
chr8 (194-327)||(7277749-7277882)
chr8 (194-327)||(7275144-7275277)
chr8 (194-327)||(13856675-13856809)
chr8 (201-330)||(3567495-3567627)
chr8 (201-256)||(29864498-29864553)
chr8 (194-231)||(5690859-5690896)
chr8 (194-223)||(12464815-12464844)
chr8 (136-196)||(4620025-4620085)
[»] scaffold0525 (1 HSPs)
scaffold0525 (194-327)||(2028-2161)
[»] chr6 (9 HSPs)
chr6 (194-327)||(8655827-8655960)
chr6 (194-327)||(30689634-30689767)
chr6 (194-283)||(6825508-6825597)
chr6 (194-283)||(6823035-6823124)
chr6 (194-274)||(24249778-24249858)
chr6 (79-189)||(7519616-7519726)
chr6 (79-189)||(7528987-7529097)
chr6 (194-271)||(4555733-4555810)
chr6 (201-274)||(1136235-1136309)
[»] chr2 (8 HSPs)
chr2 (194-327)||(31269463-31269596)
chr2 (194-327)||(31180223-31180355)
chr2 (194-327)||(24038268-24038401)
chr2 (194-327)||(24039463-24039596)
chr2 (16-196)||(34691042-34691222)
chr2 (16-196)||(34713454-34713634)
chr2 (192-321)||(36402682-36402811)
chr2 (69-153)||(33861104-33861188)
[»] chr5 (10 HSPs)
chr5 (192-327)||(21256625-21256760)
chr5 (194-327)||(21254153-21254286)
chr5 (194-327)||(26873161-26873294)
chr5 (225-327)||(31339169-31339272)
chr5 (195-278)||(4730657-4730741)
chr5 (16-196)||(16349354-16349534)
chr5 (194-256)||(43233901-43233963)
chr5 (194-231)||(41949333-41949370)
chr5 (194-231)||(41951731-41951768)
chr5 (200-273)||(15543694-15543767)
[»] chr7 (7 HSPs)
chr7 (194-327)||(41832611-41832744)
chr7 (194-327)||(41830205-41830338)
chr7 (193-325)||(8083388-8083520)
chr7 (193-323)||(25432075-25432206)
chr7 (220-274)||(23613779-23613833)
chr7 (194-256)||(7737387-7737449)
chr7 (233-274)||(23613725-23613766)
[»] scaffold0862 (1 HSPs)
scaffold0862 (194-327)||(227-360)
[»] chr4 (8 HSPs)
chr4 (192-327)||(2547025-2547160)
chr4 (16-196)||(4231682-4231862)
chr4 (194-274)||(35783779-35783859)
chr4 (194-274)||(5444778-5444859)
chr4 (193-256)||(27510482-27510545)
chr4 (194-270)||(5440887-5440964)
chr4 (192-323)||(20880036-20880168)
chr4 (194-274)||(4167574-4167654)
[»] scaffold0023 (1 HSPs)
scaffold0023 (194-327)||(111544-111677)
[»] scaffold0251 (1 HSPs)
scaffold0251 (228-327)||(4620-4719)
[»] scaffold0001 (2 HSPs)
scaffold0001 (192-283)||(144659-144750)
scaffold0001 (194-283)||(146720-146809)
[»] chr3 (12 HSPs)
chr3 (194-327)||(10018777-10018911)
chr3 (194-323)||(10123317-10123447)
chr3 (194-327)||(10256091-10256225)
chr3 (194-327)||(10179974-10180108)
chr3 (194-274)||(782838-782918)
chr3 (194-274)||(19954451-19954531)
chr3 (194-272)||(10514351-10514429)
chr3 (194-274)||(10661756-10661836)
chr3 (194-274)||(10511027-10511106)
chr3 (192-231)||(17743104-17743143)
chr3 (192-231)||(19044424-19044463)
chr3 (193-274)||(10613345-10613426)
[»] scaffold0655 (1 HSPs)
scaffold0655 (195-327)||(649-782)
[»] scaffold0959 (1 HSPs)
scaffold0959 (194-244)||(408-458)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7888864 - 7888669
Alignment:
Q  1 tgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7888864 tgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaa 7888765  T
Q  101 ccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7888764 ccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 7888669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7891129 - 7890934
Alignment:
Q  1 tgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaa 100  Q
    ||||||||||||||||||||| || ||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  7891129 tgtagtggcatccatcttgttacaacagcagatcatttgtgaaacaccaagagcgaatgcaagttgaacatgttcagtggtctgaccattcttacaaaaa 7891030  T
Q  101 ccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    || || ||||||||||||  ||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||||||||| |||||||||||||||    
T  7891029 ccagcgtcaaaaccaccaagtgtagaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgt 7890934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 18705708 - 18705841
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  18705708 tgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatagaatattacaaaatgagaaaagttccctcta 18705807  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  18705808 atggggtggttacaagttatttatactactctct 18705841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 45993562 - 45993382
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||| ||||||||||  |  ||||| |||| |||||||||  || ||||||||   ||||||||||||||  ||| ||||||||||||||||    
T  45993562 cttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaaaacca 45993463  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    | ||| ||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| |||||||||||||||    
T  45993462 cgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgt 45993382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 43045209 - 43045389
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    ||||||||| |||||||||||||  |  ||||| |||| ||| |||||  || ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  43045209 cttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaacca 43045308  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| |||||||||||||||||||| |||||||||||||  || |  ||||||||||||||||| |||||||||||||||    
T  43045309 ccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgt 43045389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 43045662 - 43045842
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    ||||||||| |||||||||||||  |  ||||| |||| ||| |||||  || ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  43045662 cttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaacca 43045761  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| |||||||||||||||||||| |||||||||||||  || |  ||||||||||||||||| |||||||||||||||    
T  43045762 ccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgt 43045842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 43066745 - 43066565
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    ||||||||| |||||||||||||  |  ||||| |||| ||| |||||  || ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  43066745 cttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaacca 43066646  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| |||||||||||||||||||| |||||||||||||  || |  ||||||||||||||||| |||||||||||||||    
T  43066645 ccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgt 43066565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 43084090 - 43084270
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    ||||||||| |||||||||||||  |  ||||| |||| ||| |||||  || ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  43084090 cttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaacca 43084189  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| |||||||||||||||||||| |||||||||||||  || |  ||||||||||||||||| |||||||||||||||    
T  43084190 ccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgt 43084270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 38137930 - 38137750
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||     ||||| ||| |||| |||||  || ||||||||| ||||||||| |||| | || |||| |||||||||| |    
T  38137930 cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta 38137831  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||||||||||||||||| |||||||||||| |||||||  |||| |||||| ||||||||||| |||||||||||||||    
T  38137830 ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgt 38137750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 45983776 - 45983602
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||  |  ||||| |||| |||||||||  || ||||||||  ||||||||||| | |||      ||||||||||||||    
T  45983776 cttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattcatac------cggcttcaaaacca 45983683  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| ||||||||||||| |||||||||||| |||||||  ||||  ||||||||||||||||| |||||||||||||||    
T  45983682 ccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgt 45983602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 3301008 - 3301125
Alignment:
Q  79 ggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttc 178  Q
    |||||| ||||||||  | | |||||||||||||||||| || |||||||||||||| |||||||||||||||||||  || |  || || |||||||||    
T  3301008 ggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc 3301107  T
Q  179 ttgatgaaatccctgtgt 196  Q
    || |||||||||||||||    
T  3301108 ttaatgaaatccctgtgt 3301125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 51291885 - 51292003
Alignment:
Q  70 atgttcagtggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtg 169  Q
    |||||||  |||||||||||||||| || |||| |||||||| || |||||||||||||||| |||||||| | |||| |||||||   ||| ||||| |    
T  51291885 atgttcaccggtctgaccatccttagaataaccagcttcaaacccgccagttgtggaatcaaggatgagaataacacagtcagcttggaacggcccggcg 51291984  T
Q  170 atcatgttcttgatgaaat 188  Q
    ||||||||||| |||||||    
T  51291985 atcatgttcttaatgaaat 51292003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 40034762 - 40034595
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||  |  ||||| ||||   |||||||  || |||||||||||||||||||||        | ||| |  ||||||| |    
T  40034762 cttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtggtctgaccat------tgataccagtctcaaaacta 40034669  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatc 189  Q
    |||||| ||||||||||||||||||||||||| ||||||   ||||  ||||| | ||||||||||||||||||    
T  40034668 ccagttctggaatcaatgatgagaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaatc 40034595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 2427369 - 2427330
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaa 233  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaaa 2427330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 43076746 - 43076686
Alignment:
Q  128 tcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaat 188  Q
    |||| ||| |||| ||||||||||||||  |||| ||| |||||||||||||| |||||||    
T  43076746 tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaat 43076686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1846592 - 1846787
Alignment:
Q  1 tgtagtggcatccatcttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  1846592 tgtagtggcatccatcttgttacagcagcagatcatttgtgaaacaccaagagcgtaggcaagttgaacatgttcattggtctgaccattcttacaaaaa 1846691  T
Q  101 ccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    || |||||||||||||||| ||| || |||||||| ||||| ||||| |||||||| || || ||||||||||||||||| |||||||||||||||    
T  1846692 ccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttcttaatgaaatccctgtgt 1846787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 7277749 - 7277882
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7277749 tgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 7277848  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  7277849 atggggtggttacaagttatttatactactctct 7277882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 7275144 - 7275277
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7275144 tgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 7275243  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  7275244 atggggtggttacaagttatttatactactctct 7275277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 13856809 - 13856675
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 291  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||  ||| |||| ||||||| ||||||||||| ||| |||||||  ||||| ||||||    
T  13856809 tgttatgaaacatgacatccatggaaagaaggagagaaaactaacgaacactttgtattgatagaaatggaatactac-aaatgagtgaaagtaaccctc 13856711  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    |||||| |||||||||||||||||||||||||||||    
T  13856710 taatggggtggttacaagttatttatactactctct 13856675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 3567495 - 3567627
Alignment:
Q  201 aaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag---aaaagta-ccctctaatg 296  Q
    ||||||| ||||| |||||||||||| ||||| |||| ||||||||| |||||||| |||||||||||||| |||||||   ||||||| |||||||||     
T  3567495 aaacatgacatccgtggaaggaaggaaagaaatctaacaaactctttgtattgatgaaaatggaatattac-aaatgagtgaaaaagtatccctctaata 3567593  T
Q  297 gagtggttacaagttatttatactactctctgct 330  Q
    | ||||||||| ||||||||||||||||||||||    
T  3567594 gggtggttacaggttatttatactactctctgct 3567627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 29864498 - 29864553
Alignment:
Q  201 aaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 256  Q
    ||||||||||||||| |||| ||  |||||||| ||| ||||||||||||||||||    
T  29864498 aaacatggcatccatagaagaaaatagagaaaattaacaaactctttctattgatg 29864553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 5690896 - 5690859
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaa 231  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaa 223  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 4620025 - 4620085
Alignment:
Q  136 gagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    |||||||||||| |||||||  || |  ||||||||||||||||| |||||||| ||||||    
T  4620025 gagaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgt 4620085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 2028 - 2161
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctcta 2127  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  2128 atggggtggttacaagttatttatactactctct 2161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 8655827 - 8655960
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctcta 8655926  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  8655927 atggggtggttacaagttatttatactactctct 8655960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 30689634 - 30689767
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattgatgaaagtgaaatattacaaaatgagaaaagtaccctcta 30689733  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||| ||||||||||||||||||    
T  30689734 atggggtggttacaaattatttatactactctct 30689767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 6825508 - 6825597
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 283  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 6823035 - 6823124
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 283  Q
    |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  6823035 tgttagaaaacatgacattcatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 24249858 - 24249778
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaa 24249778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 7519726 - 7519616
Alignment:
Q  79 ggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttc 178  Q
    |||||| ||||||||| | | ||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |  || |  || || |||||||||    
T  7519726 ggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttc 7519627  T
Q  179 ttgatgaaatc 189  Q
    |||||||||||    
T  7519626 ttgatgaaatc 7519616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 7529097 - 7528987
Alignment:
Q  79 ggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttc 178  Q
    |||||| ||||||||| | | ||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| |  || |  || || |||||||||    
T  7529097 ggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataagcacggcacaatcagcctgggaggttccagtaatcatgttc 7528998  T
Q  179 ttgatgaaatc 189  Q
    |||||||||||    
T  7528997 ttgatgaaatc 7528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 4555810 - 4555733
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattac 271  Q
    |||||||||||||||||||||| ||  |||||||  ||| |||| ||||||||| ||||||| |||||| ||||||||    
T  4555810 tgttaggaaacatggcatccatagatcgaaggagcaaaatctaacaaactctttgtattgatagaaatgaaatattac 4555733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 1136235 - 1136309
Alignment:
Q  201 aaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaa 274  Q
    ||||||| ||||||||||||||| ||||||||  ||  ||| |||||| ||||||||||||| ||||||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaa 1136309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 31269463 - 31269596
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaattgaatattacaaaatgagaaaagtaccctcta 31269562  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||| ||||||||    
T  31269563 atggggtggttacaagttatttatattactctct 31269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 31180355 - 31180223
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-ccctcta 31180257  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| ||||||| |||||||||||||||||||||    
T  31180256 atggggtggttagaagttatttatactactctct 31180223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 24038401 - 24038268
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctcta 24038302  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    ||||||||||||||||||||||||||||||||||    
T  24038301 atggagtggttacaagttatttatactactctct 24038268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 24039596 - 24039463
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctcta 24039497  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||  |||||||||||||||||||||||||||||    
T  24039496 atgaggtggttacaagttatttatactactctct 24039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 34691042 - 34691222
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||     ||||| |||| |||||||||  || |||||||   ||||||||||| |||| |  |||| |||   |||||     
T  34691042 cttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacct 34691141  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    | ||| || |||||||||| |||||||||||| |||||||  || | |||||||||||||||||| |||||||||||||||    
T  34691142 ctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgt 34691222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 34713454 - 34713634
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||     ||||| |||| |||||||||  || |||||||   ||||||||||| |||| |  |||| |||   |||||     
T  34713454 cttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgcaaacct 34713553  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    | ||| || |||||||||| |||||||||||| |||||||  || | |||||||||||||||||| |||||||||||||||    
T  34713554 ctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgt 34713634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 321
Target Start/End: Original strand, 36402682 - 36402811
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatga--gaaaagtaccc 289  Q
    ||||||| ||||||||  |||||||||| |||||||||||| |||  ||||||||| ||||||||||||| ||||||||| ||||||  ||||  |||||    
T  36402682 tgtgttatgaaacatgatatccatggaatgaaggagagaaatctac-aaactctttgtattgatggaaatagaatattac-aaatgagtgaaagttaccc 36402779  T
Q  290 tctaatggagtggttacaagttatttatacta 321  Q
     ||||||| ||||||||||  |||||||||||    
T  36402780 actaatggggtggttacaaactatttatacta 36402811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 33861104 - 33861188
Alignment:
Q  69 catgttcagtggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagc 153  Q
    ||||||||  ||||||||||| |||| |||||||  |||||||||||||||  | |||||||| ||| |||| ||| ||||||||    
T  33861104 catgttcacgggtctgaccatgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagc 33861188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 21256760 - 21256625
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  21256760 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctc 21256661  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    |||||| |||||||||||||||||||||||||||||    
T  21256660 taatggggtggttacaagttatttatactactctct 21256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 21254286 - 21254153
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaaatgagaaaagttccctcta 21254187  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| | |||||||||||||||||||||||||||    
T  21254186 atggggcggttacaagttatttatactactctct 21254153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 26873161 - 26873294
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatagaatattacgaaatgagaaaagtttcctcta 26873260  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    ||||| || ||||||||||||| |||||||||||    
T  26873261 atggaatgattacaagttatttttactactctct 26873294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 31339169 - 31339272
Alignment:
Q  225 gagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-accctctaatggagtggttacaagttatttatactact 323  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  || | |||| ||||||| |||||||||||||||||||||||||    
T  31339169 gagagaaaactaagaaactctttctatcgatggaaattgaatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatactact 31339268  T
Q  324 ctct 327  Q
    ||||    
T  31339269 ctct 31339272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 4730741 - 4730657
Alignment:
Q  195 gttaggaaacatggcatccatggaaggaaggagagaaaa--ctaagaaactctttctattgatggaaatggaatattacaaaatga 278  Q
    |||||||||||||||||||||||| | ||||||| ||||  |||| ||||||||| ||||||||||||||||||||||||||||||    
T  4730741 gttaggaaacatggcatccatggatg-aaggagaaaaaaagctaacaaactctttgtattgatggaaatggaatattacaaaatga 4730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 16349354 - 16349534
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||  |  ||||| |||| | | ||| |  || ||||||||  | |||||||||  ||  ||| ||||||| ||||||||    
T  16349354 cttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaaaacca 16349453  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
     |||  |||||||||| ||| |||| ||||||||||||||  || | ||| || ||||||||||| |||||||||||||||    
T  16349454 gcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgt 16349534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 43233963 - 43233901
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 256  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | | ||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatg 43233901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 41949333 - 41949370
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaa 231  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaa 231  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 15543694 - 15543767
Alignment:
Q  200 gaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaa 273  Q
    |||||||| ||||||| ||| ||| ||||||||| |||  ||||| || ||||||||||||| |||| ||||||    
T  15543694 gaaacatgccatccatagaatgaatgagagaaaagtaactaactcattgtattgatggaaattgaatgttacaa 15543767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 41832744 - 41832611
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaaatgagaaaagtaccctcta 41832645  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  41832644 atggggtggttacaagttatttatactactctct 41832611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 41830338 - 41830205
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactctttctattgatgtaaattgaatattacaaaatgagaaaagttccctcta 41830239  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  41830238 atggggtggttacaagttatttatactactctct 41830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 8083388 - 8083520
Alignment:
Q  193 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||    
T  8083388 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaaatgacaaaagttccctct 8083487  T
Q  293 aatggagtggttacaagttatttatactactct 325  Q
    ||||| ||||||| |||||||||||||||||||    
T  8083488 aatggggtggttagaagttatttatactactct 8083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 25432206 - 25432075
Alignment:
Q  193 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaaatgag-aaaagtaccct 290  Q
    |||||| |||||||||||||||||||||||| ||||||||  ||  |||  ||||| ||||||||||||| |||||||||  ||||||  ||||| |||     
T  25432206 gtgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattac-gaatgagtgaaagtgccca 25432108  T
Q  291 ctaatggagtggttacaagttatttatactact 323  Q
    ||||||| ||||||||||| |||||||| ||||    
T  25432107 ctaatggggtggttacaagctatttatagtact 25432075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 23613833 - 23613779
Alignment:
Q  220 ggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  23613833 ggaagtagagaaaactaacaaactctttttattgatggaaatgaaatattacaaa 23613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 7737449 - 7737387
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 256  Q
    ||||||||||||||  |||||  ||||||| ||||||||||||||| | ||||||||||||||    
T  7737449 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatg 7737387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 23613766 - 23613725
Alignment:
Q  233 actaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||| ||||||||| |||||||||||||| |||||||||||    
T  23613766 actaacaaactctttttattgatggaaatgaaatattacaaa 23613725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 360 - 227
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 261  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| ||||||||||||||||||||||| |||||    
T  260 atggggtggttacaagttatttatactattctct 227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 2547160 - 2547025
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctc 291  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  2547160 tgtgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaagttccctc 2547061  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    |||||| |||||||||||||||||||||||||||||    
T  2547060 taatggggtggttacaagttatttatactactctct 2547025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 4231682 - 4231862
Alignment:
Q  16 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 115  Q
    |||||||||||||||||||||||     ||||| |||| ||| |||||  || ||||||||   ||||||||||||||  ||| ||| ||||||||||||    
T  4231682 cttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaaacca 4231781  T
Q  116 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgt 196  Q
    ||||| ||||||||||||||||||||||||||||||||||  || |  || || ||||||||||| |||||||||||||||    
T  4231782 ccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgt 4231862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 35783859 - 35783779
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||| |||||||||||||||||||| |||||||  |||||||| ||||||||| ||||||| ||||||||||||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 35783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 5444859 - 5444778
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaa-ctaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||||||||||||||||| |||||| ||||||| ||||| |||| ||||||||| ||||||| ||||||||||||||||||    
T  5444859 tgttaggaaacatggcatctatggaaagaaggagggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 5444778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 27510482 - 27510545
Alignment:
Q  193 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 256  Q
    |||||||||||||||  |||||  ||||||| ||||||||||||||| | ||||||||||||||    
T  27510482 gtgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatg 27510545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 5440964 - 5440887
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggag-agaaaactaagaaactctttctattgatggaaatggaatatta 270  Q
    ||||||||||||||||||| ||  || ||||||| | |||||||| ||||||||| ||||||| |||||| |||||||    
T  5440964 tgttaggaaacatggcatctataaaaagaaggagaaaaaaactaacaaactctttgtattgattgaaatgaaatatta 5440887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 20880036 - 20880168
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatga-gaaaagta-ccc 289  Q
    ||||||| ||| ||||  |||||||||||||| ||||||||| |||  |||||||| |||| |||  ||| |||  ||||||| ||| ||  |||| |||    
T  20880036 tgtgttatgaagcatgatatccatggaaggaatgagagaaaagtaactaactctttgtattaatgagaatagaaagttacaaa-tgatgagcagtatccc 20880134  T
Q  290 tctaatggagtggttacaagttatttatactact 323  Q
     ||||||| |||||||||||||||||||||||||    
T  20880135 actaatggggtggttacaagttatttatactact 20880168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 4167574 - 4167654
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||| ||||| ||||||| || ||||||| ||||||||| | |  |||||||| ||| |||| |||| ||||||||||||    
T  4167574 tgttacgaaacgtggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaa 4167654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 111544 - 111677
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactctttttattgatttaaatggaatattacaaaatgagaaaagttccctcta 111643  T
Q  294 atggagtggttacaagttatttatactactctct 327  Q
    |||| |||||||||||||||||||||||||||||    
T  111644 atggggtggttacaagttatttatactactctct 111677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 4719 - 4620
Alignment:
Q  228 agaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggagtggttacaagttatttatactactctct 327  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  4719 agaaaactaagaaactctttctattgatgaaaatgaaatattacaaaatggaaaaagttccctctaatagggtggttacaaattatttatactactctct 4620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 144659 - 144750
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 283  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  144659 tgtgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 144750  T

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Target: scaffold0001; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 146720 - 146809
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 283  Q
    ||||||||||||||||||| || |||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  146720 tgttaggaaacatggcatctatagaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 146809  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 10018777 - 10018911
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 291  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||   |||| ||| ||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccatc 10018875  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    ||||   ||| |||||||||||||||||||||||||    
T  10018876 taataaggtgattacaagttatttatactactctct 10018911  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 323
Target Start/End: Original strand, 10123317 - 10123447
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 291  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||   |||| ||||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccctc 10123415  T
Q  292 taatggagtggttacaagttatttatactact 323  Q
    ||||   |||||||||||||||||||||||||    
T  10123416 taataaggtggttacaagttatttatactact 10123447  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 10256091 - 10256225
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 291  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| |||||||   |||| ||| ||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccatc 10256189  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    ||||   |||||||||||||||||||||||||||||    
T  10256190 taataaggtggttacaagttatttatactactctct 10256225  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 10179974 - 10180108
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 291  Q
    |||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtgaaagtaaccctc 10180072  T
Q  292 taatggagtggttacaagttatttatactactctct 327  Q
    |||| |  || |||||||||||||||| ||||||||    
T  10180073 taataggatgattacaagttatttatattactctct 10180108  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 782838 - 782918
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaa 782918  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 19954451 - 19954531
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 274  Q
    ||||| |||||||| |||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||| ||||||    
T  19954451 tgttatgaaacatgacatccatggaaggaaggagagaaatctaacaatctctttgtattgatggaaatggaataatacaaa 19954531  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 10514351 - 10514429
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg-gaaatggaatattaca 272  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||  |||||||||||||||    
T  10514351 tgttaggaatcatggcatccatggaaagaaggagagaaaactaataaactctttgtatt-atgaaaaatggaatattaca 10514429  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 10661756 - 10661836
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg-aaatggaatattacaaa 274  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||| || | |||| |||||||||||||||||    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactctttgtagt-atggaaaatggaatattacaaa 10661836  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 10511027 - 10511106
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg-aaatggaatattacaaa 274  Q
    |||||||||||||| |||| |||||| ||| ||||||||||||| ||||||||| |||| |||| |||||||||||||||||    
T  10511027 tgttaggaaacatg-catctatggaaagaatgagagaaaactaacaaactctttgtatt-atggaaaatggaatattacaaa 10511106  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 17743143 - 17743104
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaa 231  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  17743143 tgtgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 19044463 - 19044424
Alignment:
Q  192 tgtgttaggaaacatggcatccatggaaggaaggagagaa 231  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  19044463 tgtgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 10613345 - 10613426
Alignment:
Q  193 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg-gaaatggaatattacaaa 274  Q
    ||||| |||| |||| ||||||| ||| ||| ||||||||||||| ||||||||| |||| |||  |||||||||||||||||    
T  10613345 gtgttgggaatcatgacatccatagaaagaatgagagaaaactaacaaactctttgtatt-atgcaaaatggaatattacaaa 10613426  T

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Target: scaffold0655 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 782 - 649
Alignment:
Q  195 gttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaaatgagaaaagt-accctct 292  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||  ||| |||||| ||||||||||||| |||||||| ||||||||  |||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatatta-aaaatgagtgaagtcaccctct 684  T
Q  293 aatggagtggttacaagttatttatactactctct 327  Q
    ||||| |||| ||||||||||||||||||||||||    
T  683 aatggggtggatacaagttatttatactactctct 649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 408 - 458
Alignment:
Q  194 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 244  Q
    |||||||||||| ||||||||||||||||| |||||||| |||| ||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaaatctaacaaactc 458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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