View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_57 (Length: 333)
Name: NF0816_high_57
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_57 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3415248 - 3414916
Alignment:
| Q |
1 |
cgagtgagatgaacgaggtaacccgcgaggtgcccaaattgaagaaatattattgacattaggcaggtgatgtgctttatttttgtctatgtgtacttct |
100 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3415248 |
cgagtgagagaaacgcggtaacccgcgaggtgcccaaattgaagaaatattattgacattaggcaggtgatgtgctttatttttgtctatgtgtacttct |
3415149 |
T |
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| Q |
101 |
agagacctccttaataatatttgcttttgaaaattgatattcattgtcctcctgctcttgatcttctttaattatttgttcttcttaaaaatacaattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3415148 |
agagacctccttaataatatttgcttttgaaaattgatattcattgtcctcctgctcttgatcttctttaattatttgttcttcttaaaaatacaattct |
3415049 |
T |
|
| Q |
201 |
taaattggataaaatggttagacattttgacctagtagcaatatgaagagaagcataattggttagacattttgtcaaaataaataaataattggttaga |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3415048 |
taaattggataaaatggttagacattttgacctggtagcaatatgaagtgaagtataattggttagacattttgtcaaaataaataaataattggttaga |
3414949 |
T |
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| Q |
301 |
cattttggatcatgaactcccaaatttagatca |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3414948 |
cattttggatcatgaactcccaaatttagatca |
3414916 |
T |
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