View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_62 (Length: 322)
Name: NF0816_high_62
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 314
Target Start/End: Complemental strand, 28250252 - 28249969
Alignment:
| Q |
31 |
gagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaa |
130 |
Q |
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| T |
28250252 |
gagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaa |
28250153 |
T |
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| Q |
131 |
tctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatgtcattctcctacgacggcgagaaactctttgatctagaaagcgttcgcagaat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250152 |
tctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatgtcattctcctacgacggcgagaaactctttgatctagaaagcgttcgcagaat |
28250053 |
T |
|
| Q |
231 |
catctcagtcttcgttgnnnnnnnnnnnnncacagcggttttcacaccgggagaactcaaacaatcattctccgtccctatgct |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250052 |
catctcagtcttcgttgaaaaagaaaaaaacacagcggttttcacaccgggagaactcaaacaatcattctccgtccctatgct |
28249969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 32179833 - 32179628
Alignment:
| Q |
31 |
gagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaa |
130 |
Q |
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|||||||| |||||||| ||||||||||| ||||| || |||||||| || ||| |||| |||||||| | || ||||| |||||||||||| |||| |
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| T |
32179833 |
gagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaactcgagaagcgaa |
32179734 |
T |
|
| Q |
131 |
tctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatgtcattctcctacgacggcgagaaactctttgatctagaaagcgttcgcagaat |
230 |
Q |
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| | | ||| || |||||||| || || |||| ||| | || |||||||| ||||||||||||||| || | ||||| || ||| |||| ||||| |
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| T |
32179733 |
tagctgaaattctggaacacgtaacagtgaacgatctcttggttctgtcattcacctacgacggcgagaggcttctggatcttgatagcattcggagaat |
32179634 |
T |
|
| Q |
231 |
catctc |
236 |
Q |
| |
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|||||| |
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| T |
32179633 |
catctc |
32179628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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