View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_66 (Length: 309)
Name: NF0816_high_66
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 36136583 - 36136808
Alignment:
| Q |
1 |
tgtaactaattatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataacttaataagtgtttttgcttgtgattggt |
100 |
Q |
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| T |
36136583 |
tgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataacttaataagtgtttttgcttgtgattggt |
36136682 |
T |
|
| Q |
101 |
tctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaaaattcagacaattctcgagatcagccctga |
200 |
Q |
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| T |
36136683 |
tctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaaaattcagacaattctcgagatcagccctga |
36136782 |
T |
|
| Q |
201 |
tcatatccaattttattgggtaatgc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36136783 |
tcatatccaattttattgggtaatgc |
36136808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 36136845 - 36136879
Alignment:
| Q |
263 |
accactatagtgcttatttaacatacctttatatt |
297 |
Q |
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| T |
36136845 |
accactatagtgcttatttaacatacctttatatt |
36136879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 41339459 - 41339677
Alignment:
| Q |
1 |
tgtaactaattatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataacttaataagtgtttttgcttgtgattggt |
100 |
Q |
| |
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|||||| || ||||| ||| |||||||| ||| ||||||||||||||||||| |||| | ||||||||||| ||| |||||||||| ||||| |
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| T |
41339459 |
tgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa--------gtgcctttgcttgtgcttggt |
41339550 |
T |
|
| Q |
101 |
tctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaaaattcagacaattctcgagatcagccctga |
200 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| || || |
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| T |
41339551 |
tctcttagagggtaaagaagaagcatcacgtcaagttgaaggctcaagtagttctgttaatgagcaagaaaattcggacaattctccagatcaaccatgt |
41339650 |
T |
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| Q |
201 |
tcat-atccaattttattgggtaatgc |
226 |
Q |
| |
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|| | |||||||||||||||||||||| |
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| T |
41339651 |
tcgtaatccaattttattgggtaatgc |
41339677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 22630015 - 22630048
Alignment:
| Q |
34 |
ggatatcattataaatatataactgttgattata |
67 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
22630015 |
ggatatcattataaatatataactattgattata |
22630048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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