View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_70 (Length: 291)
Name: NF0816_high_70
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_70 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3975833 - 3975595
Alignment:
| Q |
1 |
aacacatccacaattgcaccgtcgatgtcaaattttgaggtcat-------------------gcatcagccgcattttctcacgatataaatgttagat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3975833 |
aacacatccacaattgcaccgtcgatgtcaaattttgaggtcattgcaaatgtaatttcgaccgcatcagccgtattttctcacgatataaatgttagat |
3975734 |
T |
|
| Q |
82 |
aaaaccatcagaattcagaaaacactaacatatacctcaggagaaaaattctcaaaagtaatattctcagcaataaaatcttccccttccacaatggtgc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3975733 |
aaaaccatcagaattcagaaaacactaacatatacctcaggagaaaaattctcaaaagtaatattctcagcaataaaatcttccccttccacaatggtgc |
3975634 |
T |
|
| Q |
182 |
ttccacaaccaaaagtcccattccctatcacctttgaac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3975633 |
ttccacaaccaaaagtcccattccctatcacctttgaac |
3975595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 4660158 - 4660117
Alignment:
| Q |
234 |
ctcattgcgaaccatggctctgacctaaccctcctctctctc |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4660158 |
ctcattgggaaccatggctctgacctaaccctcctctctctc |
4660117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 3120268 - 3120197
Alignment:
| Q |
130 |
ttctcaaaagtaatattctcagcaataaaatcttccccttccacaatggtgcttccacaaccaaaagtccca |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3120268 |
ttctcaaaagttatattctcagcaataaagtcctccccttccacaatggtgcttccacaaccaaacgtccca |
3120197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 11649507 - 11649461
Alignment:
| Q |
229 |
tccatctcattgcgaaccatggctctgacctaaccctcctctctctc |
275 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
11649507 |
tccatctcattggaaaccatggctttgacctaaccctcctttctctc |
11649461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 5662810 - 5662856
Alignment:
| Q |
229 |
tccatctcattgcgaaccatggctctgacctaaccctcctctctctc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662810 |
tccatctcattgcgaaccatggctctgacctaaccctcctctctctc |
5662856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 7456 - 7415
Alignment:
| Q |
234 |
ctcattgcgaaccatggctctgacctaaccctcctctctctc |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7456 |
ctcattgggaaccatggctctgacctaaccctcctctctctc |
7415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 52131068 - 52131100
Alignment:
| Q |
243 |
aaccatggctctgacctaaccctcctctctctc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52131068 |
aaccatggctctgacctaaccctcctctctctc |
52131100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7112 times since January 2019
Visitors: 5774