View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_72 (Length: 283)
Name: NF0816_high_72
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40771762 - 40771517
Alignment:
| Q |
1 |
ctagttagttgatatctaaaaaatatctatatttctctaattttcaattaatccaattttcgtcttatcgatcgcattggtt---------attaatata |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40771762 |
ctagttagttgatatctaaaaaatatctatatttctctaattttcaattaatccaattttcgtcttatcgatcgcattggttgttaaatatattaatata |
40771663 |
T |
|
| Q |
92 |
agaacatttatctttactatttaatttaagataaagcaaagcaaaatttcaacccaatatatacatgtcctctaagaaaaaccccaaaatatacattttt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40771662 |
agaacatttatctttactatttaatttaagataaagcaaagcaaaatttcaacccaatatatacatgtcctctaagaaaaaccccaaaatatacattttt |
40771563 |
T |
|
| Q |
192 |
atggagtgaaaccttattttgattcatgaagttgtatgatgatgtc |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40771562 |
atggagtgaaaccttattttgattcatgaagttgtatgatgatgtc |
40771517 |
T |
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