View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_73 (Length: 282)

Name: NF0816_high_73
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_73
NF0816_high_73
[»] chr8 (1 HSPs)
chr8 (24-70)||(10714655-10714701)
[»] chr1 (1 HSPs)
chr1 (213-253)||(26452074-26452114)
[»] chr6 (1 HSPs)
chr6 (30-73)||(23342408-23342450)
[»] chr2 (1 HSPs)
chr2 (215-253)||(28928826-28928864)
[»] chr5 (1 HSPs)
chr5 (213-253)||(15814487-15814527)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 10714701 - 10714655
Alignment:
Q  24 acttttaaccaaaagcctcttgcaaagcaagcaggcagccttccctt 70  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  10714701 acttctaacccaaatcctcttgcaaagcaagcaggcagccttccctt 10714655  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 26452074 - 26452114
Alignment:
Q  213 accaataagttatattatatatttttattgatattaaataa 253  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  26452074 accaataagttatattatatattttcattgatattgaataa 26452114  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 23342408 - 23342450
Alignment:
Q  30 aaccaaaagcctcttgcaaagcaagcaggcagccttcccttacg 73  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  23342408 aaccaaaagc-tcttgcaaagcaagcaggcagtcttcccttacg 23342450  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 28928864 - 28928826
Alignment:
Q  215 caataagttatattatatatttttattgatattaaataa 253  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28928864 caataagttatattatatatttctattgatgttaaataa 28928826  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 15814487 - 15814527
Alignment:
Q  213 accaataagttatattatatatttttattgatattaaataa 253  Q
    |||||||||||| ||||| ||||||||||||| ||||||||    
T  15814487 accaataagttagattatctatttttattgatgttaaataa 15814527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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