View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0816_high_76 (Length: 275)
Name: NF0816_high_76
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_76 |
 | |
|
| [»] scaffold0707 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0707 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 5705 - 5583
Alignment:
| Q |
142 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5705 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
5606 |
T |
|
| Q |
242 |
tgttgtcaaatattgttatctct |
264 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5605 |
tgttgtcaaatattgttatctct |
5583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 5980 - 5883
Alignment:
| Q |
39 |
ttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactcttttgtgagaatcattttctggagtataattaatataacataaaaacaa |
136 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5980 |
ttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactcctttgtgagaatcattttctagagtataattaatataacataaaaacaa |
5883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 33576497 - 33576375
Alignment:
| Q |
142 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33576497 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
33576398 |
T |
|
| Q |
242 |
tgttgtcaaatattgttatctct |
264 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33576397 |
tgttgtcaaatattgttatctct |
33576375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 33576772 - 33576675
Alignment:
| Q |
39 |
ttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactcttttgtgagaatcattttctggagtataattaatataacataaaaacaa |
136 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33576772 |
ttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactcctttgtgagaatcattttctagagtataattaatataacataaaaacaa |
33576675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 34861615 - 34861675
Alignment:
| Q |
164 |
aacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
224 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
34861615 |
aacagtagaagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggc |
34861675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 5979390 - 5979311
Alignment:
| Q |
145 |
atagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
224 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||||| |||| | ||| |||||||||| ||| |||||||| |
|
|
| T |
5979390 |
atagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggc |
5979311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 36340632 - 36340541
Alignment:
| Q |
41 |
atttgtgcttaggcttttctgtaatatgcaagtgggaataaatactcttttgtgagaatcattttctggagtataattaatataacataaaa |
132 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||| |||| |||||| ||||||||||| |||||| ||| |||||||||| |||||| |
|
|
| T |
36340632 |
atttgtgcttaactttttctgtaatatccaagatggaacaaatcctctttggtgagaatcatcttctgggatattattaatataaaataaaa |
36340541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5537 times since January 2019
Visitors: 5757