View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_77 (Length: 273)
Name: NF0816_high_77
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 17109247 - 17109491
Alignment:
| Q |
1 |
aggatcctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccacta |
100 |
Q |
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| T |
17109247 |
aggatcctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccacta |
17109346 |
T |
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| Q |
101 |
gctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctag |
200 |
Q |
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| T |
17109347 |
gctggtcactacaatttccttgtaaaattggtcatcagtggtggctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttg |
17109446 |
T |
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| Q |
201 |
atgtttataagtgtattaatttcgaaatgatttcacaggaaaatg |
245 |
Q |
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| T |
17109447 |
atgtttataagtgtattaatttcgaaatgatttcacaggaaaatg |
17109491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 16977915 - 16978159
Alignment:
| Q |
1 |
aggatcctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccacta |
100 |
Q |
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| T |
16977915 |
aggatcctccgtggattggaccgggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcccaactatgcatattccccta |
16978014 |
T |
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| Q |
101 |
gctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctag |
200 |
Q |
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| T |
16978015 |
tgcggatgctacagtttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcg |
16978114 |
T |
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| Q |
201 |
atgtttataagtgtattaatttcgaaatgatttcacaggaaaatg |
245 |
Q |
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| T |
16978115 |
acctttataagtgtagtagttttgaaatgatttcacaggaaaatg |
16978159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 17029787 - 17030031
Alignment:
| Q |
1 |
aggatcctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccacta |
100 |
Q |
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||||||||||||| ||| |||| || | | ||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||| ||||| ||| |
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| T |
17029787 |
aggatcctccgtggattggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattccccta |
17029886 |
T |
|
| Q |
101 |
gctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctag |
200 |
Q |
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| T |
17029887 |
tgcggatgctacaatttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcg |
17029986 |
T |
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| Q |
201 |
atgtttataagtgtattaatttcgaaatgatttcacaggaaaatg |
245 |
Q |
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| T |
17029987 |
acctttataagtgtagtagttttgaaatgatttcacaggaaaatg |
17030031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 17048125 - 17048369
Alignment:
| Q |
1 |
aggatcctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccacta |
100 |
Q |
| |
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||||||||||||| ||| |||| || | | ||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||| ||||| ||| |
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| T |
17048125 |
aggatcctccgtggattggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattccccta |
17048224 |
T |
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| Q |
101 |
gctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctag |
200 |
Q |
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| T |
17048225 |
tgcggatgctacaatttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcg |
17048324 |
T |
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| Q |
201 |
atgtttataagtgtattaatttcgaaatgatttcacaggaaaatg |
245 |
Q |
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| T |
17048325 |
acctttataagtgtagtagttttgaaatgatttcacaggaaaatg |
17048369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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