View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_78 (Length: 273)
Name: NF0816_high_78
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 31952230 - 31952122
Alignment:
| Q |
73 |
cagaatgccagcactttcaatgacttttgtcatcctccttctgcagaagaaatcagaatagggac----attactcactacatcttggctgtatttgtaa |
168 |
Q |
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| T |
31952230 |
cagaatgccagcactttcaatgacttttgtcatcctccttctgcagaagaaatcagaatagggacattaattactcactacatcttggctgtatttgtaa |
31952131 |
T |
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| Q |
169 |
gttggtttg |
177 |
Q |
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||||||||| |
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| T |
31952130 |
gttggtttg |
31952122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 31952263 - 31952229
Alignment:
| Q |
16 |
ttcaagggagtcaatggatagaacactacaagtca |
50 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31952263 |
ttcaagggagtcaatggatagaacactacaagtca |
31952229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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