View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_79 (Length: 271)

Name: NF0816_high_79
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_79
NF0816_high_79
[»] chr5 (1 HSPs)
chr5 (78-261)||(13717412-13717598)
[»] chr8 (1 HSPs)
chr8 (73-258)||(12589952-12590138)
[»] chr6 (9 HSPs)
chr6 (84-258)||(29759231-29759406)
chr6 (73-258)||(29727735-29727921)
chr6 (92-258)||(29469442-29469609)
chr6 (76-185)||(29673867-29673977)
chr6 (73-253)||(28479159-28479340)
chr6 (73-253)||(29791614-29791795)
chr6 (73-253)||(29695176-29695357)
chr6 (73-151)||(28490379-28490458)
chr6 (73-151)||(29802789-29802868)
[»] scaffold0012 (2 HSPs)
scaffold0012 (73-256)||(238652-238836)
scaffold0012 (73-241)||(211923-212092)
[»] chr3 (1 HSPs)
chr3 (73-162)||(615007-615097)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 13717412 - 13717598
Alignment:
Q  78 aaaacttgtcgtagcatatgattctggtcttcc--actcgctttggaagtcattggtcttcc-ttttttaataagaccaaagaacaatttaatgatacac 174  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  13717412 aaaacttgtcgtagcatatgattctggtcttccgcactcgctttggaagtcattggttttcccttttttaataagacaaaagaacaatttaatgatacac 13717511  T
Q  175 tagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13717512 tagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagtatg 13717598  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 258
Target Start/End: Original strand, 12589952 - 12590138
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaat-ttaatgat 170  Q
    |||||||||| || ||||||||||| |||||| |||||||| |||||||||||||| || |||  |||||||||||||||   ||| |||| | |||| |    
T  12589952 gttttaaaacgtgccgtagcatatgcttctggccttccactagctttggaagtcataggttctcacttttttaataagacagtagagcaatgtgaatg-t 12590050  T
Q  171 acactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagt 258  Q
     |||||||| |||| |||| | ||| | || | || |||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||    
T  12590051 gcactagatcgttatgaaagagttcctcataaaaagatccaaacaacactacaactgagctttgatgctttgcaggaagaagagaagt 12590138  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 29759406 - 29759231
Alignment:
Q  84 tgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgatacactagattgt 182  Q
    |||||||||||||| |||||||| |||||| ||||| |||||||| || |||  ||||| ||||||||| | |||||||| ||| ||| |||||||| ||    
T  29759406 tgtcgtagcatatgcttctggtcatccacttgctttagaagtcatgggttctcacttttctaataagacaatagaacaatgtaaagatgcactagatcgt 29759307  T
Q  183 tacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagt 258  Q
    || |||||| ||| | || | || |||||||||| ||| ||||| ||||| ||||||||  | || ||||||||||    
T  29759306 tatgaaaaagttcctcataaaaagatccaaacaacactacaaattagctttgatgctttggaagacgaagagaagt 29759231  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 29727921 - 29727735
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattggtcttc-cttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| ||| ||| ||||||  ||||||| ||||||||||||||||||||| |||  || ||||| ||||||||| | |||||||| ||| |||     
T  29727921 gttttagaacgtgttgtaacatatgcctctggtcatccactcgctttggaagtcatgggttctcacttttctaataagacaatagaacaatgtaaagatg 29727822  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagt 258  Q
    |||||||| ||||||||||||||| | || | || |||||||  | ||| ||| ||||||| |||||| |  |||| ||||||||||    
T  29727821 cactagatcgttacgaaaaaattcctcataaaaagatccaaatgacactacaagtgagctttgatgctctggaggacgaagagaagt 29727735  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 29469442 - 29469609
Alignment:
Q  92 catatgattctggtcttccactcgctttggaagtcattggtcttc-cttttttaataagaccaaagaacaatttaatgatacactagattgttacgaaaa 190  Q
    |||||| |||||| |||||||| |||||||||||||| |||  || ||||||||||||||| |  ||||||| |||  || || ||||| |||| ||||     
T  29469442 catatgcttctggccttccactggctttggaagtcataggttctcacttttttaataagacaattgaacaatgtaaatatgcattagatcgttatgaaag 29469541  T
Q  191 aattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaagt 258  Q
     |||| |||| | || |||||||| ||||| ||| | ||||| |||||||| ||||||||||||||||    
T  29469542 gattcctgataaaaagatccaaacgatactacaacttagctttgatgctttgcaggaagaagagaagt 29469609  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 29673977 - 29673867
Alignment:
Q  76 ttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgatacac 174  Q
    ||||||| |||||||||||||| |||||||| |||||| |||||||||||||| || |||  ||||| ||||||||| | |||||| | ||||||| |||    
T  29673977 ttaaaacgtgtcgtagcatatgcttctggtcatccacttgctttggaagtcatcggttctcacttttctaataagacaatagaacagtgtaatgatgcac 29673878  T
Q  175 tagattgttac 185  Q
    ||||| |||||    
T  29673877 tagatcgttac 29673867  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 28479340 - 28479159
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  28479340 gttttaaaacgtgctgtagcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaattatg 28479241  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaaga 253  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| |||||    
T  28479240 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaaga 28479159  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 29791795 - 29791614
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  |||||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  29791795 gttttaaaacgtgctgtagcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaattatg 29791696  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaaga 253  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| |||||    
T  29791695 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaaga 29791614  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 29695357 - 29695176
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||||||| ||  || ||||||| |||||| |||||||| |||||||||||||| || |||  ||||||||| ||||| | |||||||| |||| ||     
T  29695357 gttttaaaacgtgctgtcgcatatgcttctggccttccacttgctttggaagtcataggttctcacttttttaacaagacaatagaacaatgtaatcatg 29695258  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaaga 253  Q
     ||||||| |||  ||||   ||| |||| | || |||||||||| ||| ||| ||||||| |||||||| ||||| |||||    
T  29695257 tactagatcgttgtgaaagggttcctgataaaaagatccaaacaacactacaagtgagctttgatgctttgcaggatgaaga 29695176  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 28490458 - 28490379
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagac 151  Q
    |||||||||| ||  |||||||||| |||||| ||||||||||||||||||||||| || |||  |||||||||||||||    
T  28490458 gttttaaaacgtgcggtagcatatgcttctggccttccactcgctttggaagtcataggttctcacttttttaataagac 28490379  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 29802868 - 29802789
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagac 151  Q
    |||||||||| ||  |||||||||| |||||| ||||||||||||||||||||||| || |||  |||||||||||||||    
T  29802868 gttttaaaacgtgcggtagcatatgcttctggccttccactcgctttggaagtcataggttctcacttttttaataagac 29802789  T

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Target: scaffold0012 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 238836 - 238652
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcat-tggtcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| |||||||||||||| |||||||| |||||||||||||||||| ||  | |||  ||||| ||| ||||| | |||||||| ||| |||     
T  238836 gttttagaacgtgtcgtagcatatgcttctggtcatccactcgctttggaagttatgagctctcacttttataaaaagacaatagaacaatgtaaagatg 238737  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgctttacaggaagaagagaa 256  Q
    |||||||| |||  |||||| ||| | || | || |||||||  | ||| ||| | ||||  |||||||||||||||||||||||    
T  238736 cactagatcgttttgaaaaagttcctcataaaaagatccaaatgacactacaactaagctatgatgctttacaggaagaagagaa 238652  T

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Target: scaffold0012; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 212092 - 211923
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattgg-tcttccttttttaataagaccaaagaacaatttaatgata 171  Q
    |||||| ||| |||||||||||||| |||||||| |||||| |||||||| ||||| || |||  ||||| ||||||||| | |||||||| ||| | |     
T  212092 gttttagaacgtgtcgtagcatatgcttctggtcatccacttgctttggaggtcatgggttctcacttttataataagacaatagaacaatgtaaagttg 211993  T
Q  172 cactagattgttacgaaaaaattcatgattagaaaatccaaacaatacttcaaatgagcttcgatgcttt 241  Q
    ||||||||  ||| |||||| ||| | || | || |||||||| | ||| ||| ||||||| ||||||||    
T  211992 cactagatcattatgaaaaagttcctcataaaaagatccaaacgacactacaactgagctttgatgcttt 211923  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 615007 - 615097
Alignment:
Q  73 gttttaaaacttgtcgtagcatatgattctggtcttccactcgctttggaagtcattggtcttccttttt-taataagaccaaagaacaat 162  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||||||||| |||  || ||||| ||||||||| | ||||||||    
T  615007 gttttaaaacgtgtcgtagcatatgcttctggtcatccacttgctttggaagtcatgggttctcatttttctaataagacaatagaacaat 615097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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