View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_89 (Length: 261)
Name: NF0816_high_89
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_89 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 12275512 - 12275716
Alignment:
| Q |
40 |
ttgcacggatcaatcaggaagcttagtagtctacacgacagtcgatgttgattcggtccaactagctatgagtggacaagacccttcatgcattgcactt |
139 |
Q |
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| T |
12275512 |
ttgcacagatcaatcaggaagcttagtagtctacacaacagtcgatgttgattcggtccaactagctatgagtggacaagacccttcatgcattgcactt |
12275611 |
T |
|
| Q |
140 |
cttccacaagggttcatgatagtgccaatggtttcatcaaatgctgatacatcatctgaacaaggtgtcacaggaacaccatcatctactactagtgcct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12275612 |
cttccacaagggttcatgatagtgccaatggtttcatcaaatgctgatacatcatctgaacaaggtgtcacaggaacaccatcatctactgctagtgcca |
12275711 |
T |
|
| Q |
240 |
atgct |
244 |
Q |
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||||| |
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| T |
12275712 |
atgct |
12275716 |
T |
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