View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_high_90 (Length: 258)

Name: NF0816_high_90
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_high_90
NF0816_high_90
[»] chr1 (9 HSPs)
chr1 (1-248)||(44046173-44046420)
chr1 (1-34)||(8177207-8177240)
chr1 (1-34)||(52336799-52336832)
chr1 (1-34)||(9165220-9165253)
chr1 (1-34)||(15786345-15786378)
chr1 (1-34)||(26232411-26232444)
chr1 (1-34)||(33700798-33700831)
chr1 (1-34)||(51703797-51703830)
chr1 (4-32)||(9643837-9643865)
[»] chr3 (9 HSPs)
chr3 (1-35)||(46518645-46518679)
chr3 (1-34)||(4222159-4222192)
chr3 (1-32)||(2667882-2667913)
chr3 (1-31)||(51903903-51903933)
chr3 (1-34)||(7975436-7975469)
chr3 (1-34)||(28928904-28928937)
chr3 (1-34)||(30311324-30311357)
chr3 (1-34)||(31788995-31789028)
chr3 (1-34)||(32651463-32651496)
[»] chr5 (5 HSPs)
chr5 (1-34)||(29075799-29075832)
chr5 (1-35)||(22020887-22020921)
chr5 (1-34)||(21549162-21549195)
chr5 (1-34)||(26598542-26598575)
chr5 (1-34)||(30883223-30883256)
[»] chr4 (5 HSPs)
chr4 (1-34)||(38869786-38869819)
chr4 (3-34)||(27965537-27965568)
chr4 (1-32)||(51250547-51250578)
chr4 (1-34)||(37109376-37109409)
chr4 (5-34)||(37443720-37443749)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-32)||(11548-11579)
[»] chr7 (4 HSPs)
chr7 (1-32)||(48771958-48771989)
chr7 (1-34)||(25021360-25021393)
chr7 (1-34)||(26459435-26459468)
chr7 (1-34)||(42836026-42836059)
[»] chr8 (6 HSPs)
chr8 (1-34)||(2203510-2203543)
chr8 (1-34)||(3624598-3624631)
chr8 (1-34)||(6569796-6569829)
chr8 (1-34)||(7286225-7286258)
chr8 (1-34)||(16852358-16852391)
chr8 (1-33)||(30483909-30483941)
[»] chr6 (2 HSPs)
chr6 (1-34)||(12188328-12188361)
chr6 (1-29)||(34786479-34786507)
[»] chr2 (3 HSPs)
chr2 (1-34)||(16918603-16918636)
chr2 (1-34)||(42327420-42327453)
chr2 (1-34)||(42602572-42602605)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 44046173 - 44046420
Alignment:
Q  1 gagcacactcccagatcccaagccaataccactatcattagcagaagacttttcttagaatatatataaatagcagatagatagatttgagtaattaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44046173 gagcacactcccagatcccaagccaataccactatcattagcagaagacttttcttaggatatatataaatagcagatagatagatttgagtaattaagt 44046272  T
Q  101 gtgttattcatttgaagatttggaaattgagaattatggattgtgtctaatgatctgaaaattcagaattgtgattgatttgagatcttggaaaccatgt 200  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44046273 gtgttattcatttggagatttggaaaatgagaattatggattgtgtctaatgatctgaaaattcagaattgtgattgatttgagatcttggaaaccattt 44046372  T
Q  201 cttgtgtatgatgaatgatgactctggttcagtttggctttttctgtg 248  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44046373 cttgtgtataatgaatgatgactctggttcagtttggctttttctgtg 44046420  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8177207 - 8177240
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8177207 gagcacactcccagatcccaagccaataccacta 8177240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 52336799 - 52336832
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52336799 gagcacactcccagatcccaagccaataccacta 52336832  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9165220 - 9165253
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  9165220 gagcacactcccaggtcccaagccaataccacta 9165253  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15786345 - 15786378
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  15786345 gagcacactcccagatcccaagccaatactacta 15786378  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26232411 - 26232444
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  26232411 gagcacactcccagatctcaagccaataccacta 26232444  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33700798 - 33700831
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||| |||||||||||||||||    
T  33700798 gagcacactcccagattccaagccaataccacta 33700831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 51703830 - 51703797
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||| |||||||||||||||||    
T  51703830 gagcacactcccagattccaagccaataccacta 51703797  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 9643837 - 9643865
Alignment:
Q  4 cacactcccagatcccaagccaataccac 32  Q
    |||||||||||||||||||||||||||||    
T  9643837 cacactcccagatcccaagccaataccac 9643865  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46518679 - 46518645
Alignment:
Q  1 gagcacactcccagatcccaagccaataccactat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  46518679 gagcacactcccagatcccaagccaataccactat 46518645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4222192 - 4222159
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4222192 gagcacactcccagatcccaagccaataccacta 4222159  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 2667913 - 2667882
Alignment:
Q  1 gagcacactcccagatcccaagccaataccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  2667913 gagcacactcccagatcccaagccaataccac 2667882  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 51903903 - 51903933
Alignment:
Q  1 gagcacactcccagatcccaagccaatacca 31  Q
    |||||||||||||||||||||||||||||||    
T  51903903 gagcacactcccagatcccaagccaatacca 51903933  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7975469 - 7975436
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||||||||||| |||||||||    
T  7975469 gagcacactcccagatcccaagcctataccacta 7975436  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28928904 - 28928937
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||| |||||||||||||||||||||||    
T  28928904 gagcacactctcagatcccaagccaataccacta 28928937  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30311357 - 30311324
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30311357 gagcacactcccagatcccaagcctataccacta 30311324  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31788995 - 31789028
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||||||||||||||| |||||    
T  31788995 gagcacactcccagatcccaagccaataacacta 31789028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32651463 - 32651496
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  32651463 gagcacactcccaggtcccaagccaataccacta 32651496  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29075832 - 29075799
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29075832 gagcacactcccagatcccaagccaataccacta 29075799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22020887 - 22020921
Alignment:
Q  1 gagcacactcccagatcccaagccaataccactat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  22020887 gagcacactcccagatcccaagctaataccactat 22020921  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21549162 - 21549195
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  21549162 gagcacactcccaggtcccaagccaataccacta 21549195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26598575 - 26598542
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||| |||||||||||||||||||||||    
T  26598575 gagcacactctcagatcccaagccaataccacta 26598542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30883223 - 30883256
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  30883223 gagcacactcccaggtcccaagccaataccacta 30883256  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38869819 - 38869786
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38869819 gagcacactcccagatcccaagccaataccacta 38869786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 27965537 - 27965568
Alignment:
Q  3 gcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||||    
T  27965537 gcacactcccagatcccaagccaataccacta 27965568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 51250547 - 51250578
Alignment:
Q  1 gagcacactcccagatcccaagccaataccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  51250547 gagcacactcccagatcccaagccaataccac 51250578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37109376 - 37109409
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  37109376 gagcacactcccaggtcccaagccaataccacta 37109409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 37443749 - 37443720
Alignment:
Q  5 acactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||||||||||||    
T  37443749 acactcccagatcccaagccaataccacta 37443720  T

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Target: scaffold0299 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 11579 - 11548
Alignment:
Q  1 gagcacactcccagatcccaagccaataccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  11579 gagcacactcccagatcccaagccaataccac 11548  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48771989 - 48771958
Alignment:
Q  1 gagcacactcccagatcccaagccaataccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  48771989 gagcacactcccagatcccaagccaataccac 48771958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25021360 - 25021393
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  25021360 gagcacactcccaggtcccaagccaataccacta 25021393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26459435 - 26459468
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  26459435 gagcacactcccaggtcccaagccaataccacta 26459468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42836026 - 42836059
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  42836026 gagcacactcccaggtcccaagccaataccacta 42836059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2203543 - 2203510
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  2203543 gagcacactcccaggtcccaagccaataccacta 2203510  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3624631 - 3624598
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  3624631 gagcacactcccaggtcccaagccaataccacta 3624598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6569796 - 6569829
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||||||||||||||||| |||||    
T  6569796 gagcacactcccagatcccaagccaatatcacta 6569829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7286258 - 7286225
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  7286258 gagcacactcccagatcccaaaccaataccacta 7286225  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16852391 - 16852358
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  16852391 gagcacactcccaggtcccaagccaataccacta 16852358  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30483909 - 30483941
Alignment:
Q  1 gagcacactcccagatcccaagccaataccact 33  Q
    ||||||||||||| |||||||||||||||||||    
T  30483909 gagcacactcccatatcccaagccaataccact 30483941  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12188328 - 12188361
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  12188328 gagcacactcccaggtcccaagccaataccacta 12188361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34786479 - 34786507
Alignment:
Q  1 gagcacactcccagatcccaagccaatac 29  Q
    |||||||||||||||||||||||||||||    
T  34786479 gagcacactcccagatcccaagccaatac 34786507  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16918603 - 16918636
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  16918603 gagcacactcccagatcccaaaccaataccacta 16918636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42327420 - 42327453
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  42327420 gagcacactcccaggtcccaagccaataccacta 42327453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42602605 - 42602572
Alignment:
Q  1 gagcacactcccagatcccaagccaataccacta 34  Q
    |||||||||||||| |||||||||||||||||||    
T  42602605 gagcacactcccaggtcccaagccaataccacta 42602572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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