View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_high_93 (Length: 257)
Name: NF0816_high_93
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_high_93 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 34962510 - 34962283
Alignment:
| Q |
30 |
gttcccgccatcagagactgatccgatcgatttcacggagaggatggaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggag |
129 |
Q |
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| T |
34962510 |
gttcccgccatcagagactgatccgatcgatttcacggagaggatggaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggag |
34962411 |
T |
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| Q |
130 |
gagagtgtggtggcgcgtgacaacactcgtgactccattgggatcaaaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962410 |
gagagtgtggtggcgcgtgacaacactcgtgactccattgggatcaaaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgt |
34962311 |
T |
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| Q |
230 |
tggtacctgtggttctcgttaaccgtct |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
34962310 |
tggtacctgtggttctcgttaaccgtct |
34962283 |
T |
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