View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_11 (Length: 615)
Name: NF0816_low_11
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Original strand, 32672680 - 32673256
Alignment:
| Q |
11 |
acaatatgaaccaaccaataaggaagaattacgattaccttcgagaagggaaaatctgttgttgtctcctcaacatcacacaaaatcaccctccagcaag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32672680 |
acaaaatgaaccaaccaataaggaagaattacgattaccttcgagaagggaaaatctgttgttgtctcctcaatatcacacaaaatcaccctccagcaag |
32672779 |
T |
|
| Q |
111 |
aaggcggtacaaaactccacagttgtaaaatccaatgagactcaatcagcaaccaaacctttgatcaaagaactaagtttgccacacaactatgagcaca |
210 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32672780 |
aaggcggtacaaaactccacagttgtaaaatgcgatgagactcaatcagcaaccaaacctttgatcaaagaactaagtttgtcacacaactatgagcaca |
32672879 |
T |
|
| Q |
211 |
tattgaaggatgcagattcaccggttgataaatcttcaagggaaaagatgtgtgatcagctatatgctggagtgttcttacatcataagactaaggcaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32672880 |
tattgaaggatgcagattcaccggttgataaatcttcaagggaaaagatgtgtgatcagctatatgctggagtgttcttacatcataagactaaggcaag |
32672979 |
T |
|
| Q |
311 |
ttcaatatcattcagtttcttatgaacgagcaattgaatttagttatttgcaagtttaagctaattctaattgaagatttgtttttatatattgaacaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32672980 |
ttcaatatcattcagtttcttatgaacgagcaattgaatttagttatttgcaagtttaagctaattctaattgaagatttttttttatatattgaacaaa |
32673079 |
T |
|
| Q |
411 |
ttttaatgattatcgttgtttgtagaaatattgggtagagaagaactccaaagccaactgtttcatgttgtatgcaagagcactctcaatcacctgggca |
510 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32673080 |
ttttaatgattatcgttgtttttagaaatattgggtagagaagaactccaaagccaactgtttcatgttgtatgcaagagcactctcaatcacctgggca |
32673179 |
T |
|
| Q |
511 |
gaagatccaaattattggaaatggatacagcaaaaagatgttaggtacatatccttatatcattttgttttcctact |
587 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32673180 |
gaagatccaaattattggaaatggatacagcaaaaagatgttaggtacatatccttatatcattttgttttcctact |
32673256 |
T |
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