View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_115 (Length: 251)

Name: NF0816_low_115
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_115
NF0816_low_115
[»] chr8 (6 HSPs)
chr8 (1-238)||(12051340-12051578)
chr8 (6-238)||(12030223-12030455)
chr8 (56-121)||(26006778-26006843)
chr8 (53-138)||(40175146-40175231)
chr8 (56-106)||(19755325-19755375)
chr8 (58-98)||(43234227-43234267)
[»] chr1 (1 HSPs)
chr1 (55-145)||(31592358-31592448)
[»] chr2 (1 HSPs)
chr2 (53-135)||(16349459-16349541)
[»] chr7 (2 HSPs)
chr7 (56-133)||(21223039-21223116)
chr7 (55-145)||(34899118-34899215)
[»] chr4 (2 HSPs)
chr4 (53-97)||(653783-653827)
chr4 (58-138)||(28031560-28031640)
[»] chr3 (1 HSPs)
chr3 (54-138)||(27764282-27764364)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12051578 - 12051340
Alignment:
Q  1 ttgatatggtcatatgctgcatactttttcttatgtttgttttgcttcttagaagagaaaacataatgcatttcatttaaaataagagtagtgatacatg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12051578 ttgatatggtcatatgttgcatactttttcttatgtttgttttgtttcttagaagagaaaacataatgcatttcatttaaaataagagtagtgatacatg 12051479  T
Q  101 atagaactcaaatg-aaaatacgaaaactaacatgacattgagctagatcataagaaataaggcgtcgatagtcattaataattgacgtaaaatctgaga 199  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  12051478 atagaactcaaatgaaaaatacgaaaactaacatgacattgagctagatcataagaaataaggcatcgacaatcattaataattgacgtaaaatctgaga 12051379  T
Q  200 aaccaagtgaacaaccatagatacagtcaaccaccacct 238  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  12051378 aaccaagtgaacaaccatagatacagtcaaccactacct 12051340  T

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Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 12030455 - 12030223
Alignment:
Q  6 atggtcatatgctgcatactttttcttatgtttgttttgcttcttagaagagaaaacataatgcatttcatttaaaataagagtagtgatacatgataga 105  Q
    ||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |    
T  12030455 atggtcatatgttgcatactttttcttttgtttgttttgtttattagaagagaaaacttaatgcatgtcatttaaaataagagtagtgatacatgataca 12030356  T
Q  106 actcaaatgaaaatacgaaaactaacatgacattgagctagatcataagaaataaggcgtcgatagtcattaataattgacgtaaaatctgagaaaccaa 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  12030355 actcaaatgaaaatacgaaaactaacatgccattgagctagatcataagaaataaggcgtcgacaatcattaataattgacgtaaaatttgagaaaccaa 12030256  T
Q  206 gtgaacaaccatagatacagtcaaccaccacct 238  Q
    |||||||||||||||||||||||||||||||||    
T  12030255 gtgaacaaccatagatacagtcaaccaccacct 12030223  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 26006778 - 26006843
Alignment:
Q  56 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatac 121  Q
    ||||||| |||||||||||||||||||||||||||| ||| || ||| ||| ||||||||||||||    
T  26006778 agaaaacttaatgcatttcatttaaaataagagtagagatgcaagatggaattcaaatgaaaatac 26006843  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 40175146 - 40175231
Alignment:
Q  53 aagagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 138  Q
    |||||||| | ||||||| |||||||||| ||||||||| | |||||||| ||| ||||||||||||| | |||| ||||||||||    
T  40175146 aagagaaagcctaatgcaattcatttaaagtaagagtagaggtacatgatggaattcaaatgaaaatatggaaaccaacatgacat 40175231  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 19755375 - 19755325
Alignment:
Q  56 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaa 106  Q
    ||||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  19755375 agaaaacttaatgcatttcattttaattaaaagtagggatacatgatagaa 19755325  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 43234267 - 43234227
Alignment:
Q  58 aaaacataatgcatttcatttaaaataagagtagtgataca 98  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  43234267 aaaacttaatgcatttgatttaaaataagagtagagataca 43234227  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 31592448 - 31592358
Alignment:
Q  55 gagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacattgagcta 145  Q
    |||||||  ||||||||||||||||||| |||||||| |||||| ||| ||| || |||||||||||| |||||| |||||||| ||||||    
T  31592448 gagaaaatttaatgcatttcatttaaaaaaagagtagagatacaagatggaattcgaatgaaaatacggaaactagcatgacatggagcta 31592358  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 16349459 - 16349541
Alignment:
Q  53 aagagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatga 135  Q
    |||||||| | |||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||| ||||||| |||||    
T  16349459 aagagaaatcttaatgcatttcatttaaaataagagtatagatacatgatgaaattcaaatgaacatacaaaaactagcatga 16349541  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 21223039 - 21223116
Alignment:
Q  56 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacat 133  Q
    ||||||| ||||| |||||||||||||||||| ||| |||||| ||| ||| ||||||||||||||| ||| ||||||    
T  21223039 agaaaacttaatgtatttcatttaaaataagaatagagatacaagatggaattcaaatgaaaatacggaaagtaacat 21223116  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 34899215 - 34899118
Alignment:
Q  55 gagaaaacataatgcatttcatttaaaataagag-------tagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacattgagcta 145  Q
    |||||||  |||||||||||||||||||||||||       ||| |||||| ||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  34899215 gagaaaatttaatgcatttcatttaaaataagagcagagattagagatacaagatggaattcaaatgaaaatacaaaaactaacatgacatggagcta 34899118  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 653827 - 653783
Alignment:
Q  53 aagagaaaacataatgcatttcatttaaaataagagtagtgatac 97  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  653827 aagagaaaacttaatgcatttcatttaaaataagagtagagatac 653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 28031640 - 28031560
Alignment:
Q  58 aaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 138  Q
    ||||| |||| ||||| ||||||||||| ||||| |||||| |||  || |  ||||||||||||||||||| ||||||||    
T  28031640 aaaacttaatacattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgacat 28031560  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 27764364 - 27764282
Alignment:
Q  54 agagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 138  Q
    ||||||||  ||||||||||||||||||||  |||| | |||||| ||| ||| |||||| |||||||  |||||| ||||||||    
T  27764364 agagaaaatttaatgcatttcatttaaaat--gagttgagatacaagatggaattcaaataaaaatacataaactagcatgacat 27764282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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