View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_117 (Length: 251)

Name: NF0816_low_117
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_117
NF0816_low_117
[»] chr4 (16 HSPs)
chr4 (31-161)||(52012769-52012899)
chr4 (31-153)||(9799413-9799535)
chr4 (31-157)||(47943153-47943280)
chr4 (31-153)||(12473703-12473824)
chr4 (31-153)||(12528112-12528233)
chr4 (30-151)||(33249424-33249544)
chr4 (30-138)||(21260808-21260915)
chr4 (59-128)||(46719954-46720023)
chr4 (34-152)||(35869625-35869742)
chr4 (31-152)||(22343337-22343457)
chr4 (55-151)||(49999662-49999758)
chr4 (35-104)||(51811962-51812030)
chr4 (58-151)||(52910126-52910219)
chr4 (75-152)||(55590482-55590559)
chr4 (34-86)||(33174581-33174630)
chr4 (31-67)||(46720200-46720237)
[»] chr3 (13 HSPs)
chr3 (30-159)||(47186168-47186297)
chr3 (31-157)||(31187120-31187246)
chr3 (31-157)||(42664668-42664794)
chr3 (32-156)||(34029342-34029466)
chr3 (161-251)||(40861950-40862041)
chr3 (29-158)||(47426344-47426472)
chr3 (34-138)||(37742739-37742842)
chr3 (39-151)||(50934501-50934613)
chr3 (30-148)||(33509684-33509801)
chr3 (34-152)||(44380254-44380371)
chr3 (44-104)||(35094596-35094655)
chr3 (34-98)||(6023000-6023064)
chr3 (34-128)||(17466297-17466390)
[»] chr5 (16 HSPs)
chr5 (31-158)||(29989956-29990083)
chr5 (30-157)||(38010663-38010790)
chr5 (31-157)||(13478095-13478221)
chr5 (31-153)||(13015380-13015502)
chr5 (31-157)||(13086748-13086874)
chr5 (31-157)||(13421060-13421186)
chr5 (29-108)||(37881185-37881264)
chr5 (30-153)||(1826258-1826380)
chr5 (34-152)||(11607588-11607705)
chr5 (50-152)||(19357330-19357432)
chr5 (34-147)||(33858592-33858704)
chr5 (34-97)||(42148201-42148263)
chr5 (46-152)||(9827788-9827894)
chr5 (34-152)||(39570097-39570214)
chr5 (44-88)||(33271678-33271721)
chr5 (34-128)||(10292897-10292989)
[»] chr1 (10 HSPs)
chr1 (31-158)||(8809690-8809817)
chr1 (30-155)||(35998249-35998374)
chr1 (30-153)||(29119374-29119496)
chr1 (30-152)||(32676136-32676257)
chr1 (35-152)||(2569037-2569152)
chr1 (34-152)||(8462129-8462245)
chr1 (31-138)||(35534420-35534523)
chr1 (38-79)||(16679765-16679806)
chr1 (59-128)||(25161333-25161402)
chr1 (59-95)||(8555486-8555522)
[»] chr6 (5 HSPs)
chr6 (31-157)||(34245562-34245688)
chr6 (59-151)||(11113557-11113649)
chr6 (44-159)||(5403940-5404054)
chr6 (34-151)||(1211898-1212014)
chr6 (31-87)||(32644888-32644942)
[»] chr8 (8 HSPs)
chr8 (39-157)||(1514798-1514916)
chr8 (34-138)||(18168399-18168503)
chr8 (34-138)||(18631956-18632060)
chr8 (32-158)||(24337882-24338007)
chr8 (30-152)||(41179613-41179734)
chr8 (34-91)||(4708361-4708417)
chr8 (34-102)||(11254082-11254149)
chr8 (50-151)||(32825904-32826005)
[»] chr2 (12 HSPs)
chr2 (30-152)||(34392131-34392252)
chr2 (30-133)||(10163501-10163604)
chr2 (30-104)||(23863853-23863926)
chr2 (48-152)||(37357988-37358092)
chr2 (30-83)||(3668059-3668112)
chr2 (56-152)||(21603959-21604055)
chr2 (50-149)||(7381695-7381794)
chr2 (35-137)||(14565908-14566009)
chr2 (30-96)||(41095836-41095901)
chr2 (44-88)||(4779649-4779692)
chr2 (50-92)||(34903962-34904004)
chr2 (85-138)||(3668320-3668373)
[»] chr7 (4 HSPs)
chr7 (31-160)||(48250146-48250274)
chr7 (34-152)||(35341536-35341653)
chr7 (34-132)||(32694624-32694721)
chr7 (59-91)||(31306951-31306983)
[»] scaffold0229 (1 HSPs)
scaffold0229 (44-151)||(13070-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (38-152)||(34194-34306)
[»] scaffold0519 (1 HSPs)
scaffold0519 (34-102)||(11244-11311)
[»] scaffold0263 (1 HSPs)
scaffold0263 (50-104)||(23168-23222)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 52012899 - 52012769
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||||| |    
T  52012899 catgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattgg 52012800  T
Q  131 taccttaactgtacacaagtggtgtccctat 161  Q
    ||||||||  |||||||||||||||||||||    
T  52012799 taccttaatggtacacaagtggtgtccctat 52012769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 9799413 - 9799535
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||| ||  |||||||||||||||||| |    
T  9799413 catgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattgg 9799512  T
Q  131 taccttaactgtacacaagtggt 153  Q
    ||||||||  ||| |||||||||    
T  9799513 taccttaatggtatacaagtggt 9799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 47943280 - 47943153
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatc-aatgttatataacatta 129  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||||| ||| |||||||||||||| | | |||||  || ||| ||||||||||||     
T  47943280 catgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatattatataacattg 47943181  T
Q  130 gtaccttaactgtacacaagtggtgtcc 157  Q
    |||  ||||  |||||||||||||||||    
T  47943180 gtattttaatggtacacaagtggtgtcc 47943153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 12473824 - 12473703
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| |||   ||||| |||||| |||| |    
T  12473824 catgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattgg 12473726  T
Q  131 taccttaactgtacacaagtggt 153  Q
    ||||||||  ||| |||||||||    
T  12473725 taccttaatggtatacaagtggt 12473703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 12528233 - 12528112
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| |||   ||||| |||||| |||| |    
T  12528233 catgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattgg 12528135  T
Q  131 taccttaactgtacacaagtggt 153  Q
    ||||||||  ||| |||||||||    
T  12528134 taccttaatggtatacaagtggt 12528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 33249424 - 33249544
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||| || ||||| |||   ||||  |||||| ||||     
T  33249424 ccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatataccattt 33249522  T
Q  130 gtaccttaactgtacacaagtg 151  Q
    |||||||||  |||||||||||    
T  33249523 gtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 21260915 - 21260808
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||| || ||||| |||   ||||| |||||| ||||     
T  21260915 ccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatcattg 21260817  T
Q  130 gtaccttaa 138  Q
    |||||||||    
T  21260816 gtaccttaa 21260808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 46720023 - 46719954
Alignment:
Q  59 atcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatt 128  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacatt 46719954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 35869625 - 35869742
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||| |||||| | | | |||  |||||| |||||| |||| ||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  134 cttaactgtacacaagtgg 152  Q
    |||||  ||||||||||||    
T  35869724 cttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 22343457 - 22343337
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||  |||||||| | |||||||||||||||||||||||||||||||||| ||  || || ||||| |||  |||||| |||||| ||||      
T  22343457 catgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatataccattga 22343359  T
Q  131 taccttaactgtacacaagtgg 152  Q
    ||||||||  ||||||||||||    
T  22343358 taccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 49999662 - 49999758
Alignment:
Q  55 atatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaagtg 151  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||| ||| | |||||  | |||||||||||| ||| |  |||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 51812030 - 51811962
Alignment:
Q  35 tggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactct 104  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| ||||||||||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactct 51811962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  58 tatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaagtg 151  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||| | |||   ||||| ||||||||||| ||||| | |  |||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 55590559 - 55590482
Alignment:
Q  75 ataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaagtgg 152  Q
    ||||||||||||||||| ||| || ||| | ||| ||||||| |||||| |||| |||||||||  ||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 33174630 - 33174581
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacat 86  Q
    ||||||||| |||||||||   ||||||||||||| |||||||||||||||||    
T  33174630 gtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 46720237 - 46720200
Alignment:
Q  31 catgtggcacacactttaa-aaaacatatatcaaataa 67  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  46720237 catgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 47186297 - 47186168
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||   |||||||||||||||||     
T  47186297 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattg 47186198  T
Q  130 gtaccttaactgtacacaagtggtgtccct 159  Q
    |||||||||  |||||||||||||||||||    
T  47186197 gtaccttaatggtacacaagtggtgtccct 47186168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 31187120 - 31187246
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| |    
T  31187120 catgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgg 31187219  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    ||||||||  ||||| |||||||||||    
T  31187220 taccttaatggtacataagtggtgtcc 31187246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 42664794 - 42664668
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||  ||||||||||||||| || |    
T  42664794 catgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttgg 42664695  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    ||||||||  |||||||||||||||||    
T  42664694 taccttaatggtacacaagtggtgtcc 42664668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 34029342 - 34029466
Alignment:
Q  32 atgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagt 131  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||    
T  34029342 atgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggt 34029441  T
Q  132 accttaactgtacacaagtggtgtc 156  Q
    |||||||  ||| ||||||||||||    
T  34029442 accttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 40862041 - 40861950
Alignment:
Q  161 taaagaccactattgttggcagagaagcaaaaatgactaatgaagaagataaggaagt-ttagctgaaaaagataatgcaatagaacaaatg 251  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40862041 taaagaccactattgttggcagagaaacaaaaatgactaatgaagaagataaggaagtattagctgaaaaagataatgcaatagaacaaatg 40861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 47426472 - 47426344
Alignment:
Q  29 accatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatt 128  Q
    |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| || ||| || ||||| |||   ||||| ||||||  |||    
T  47426472 accatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactatt 47426374  T
Q  129 agtaccttaactgtacacaagtggtgtccc 158  Q
     |||||||||  ||||||||||||| ||||    
T  47426373 ggtaccttaatggtacacaagtggtatccc 47426344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 37742842 - 37742739
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| |||||||||| |||||||||||||||||||  ||| |||||||||||| |||||||||||| ||| | ||||| |||||| |||| ||||    
T  37742842 gtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtac 37742744  T
Q  134 cttaa 138  Q
    |||||    
T  37742743 cttaa 37742739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 50934613 - 50934501
Alignment:
Q  39 acacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaa 138  Q
    |||| ||||||| || ||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||   ||||| |||||| |||| |||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  139 ctgtacacaagtg 151  Q
      |||||||||||    
T  50934513 tggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 33509801 - 33509684
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||  |||||||||| ||| |||||||||||||| |||||||||| ||||||| |||||| ||||| |||  |||||| ||||||  ||||    
T  33509801 ccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatactatta 33509703  T
Q  130 gtaccttaactgtacacaa 148  Q
    |||||||||  ||||||||    
T  33509702 gtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 44380371 - 44380254
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||| |||| || ||| || ||| | |||  |||||  |||||| |||| ||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  134 cttaactgtacacaagtgg 152  Q
    |||||  ||||||||||||    
T  44380272 cttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 35094655 - 35094596
Alignment:
Q  44 ctttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactct 104  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactct 35094596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 6023064 - 6023000
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggca 98  Q
    ||||||||| |||||||||| ||||||||||||||| | ||| ||| ||||||| ||||||||||    
T  6023064 gtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggca 6023000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 17466390 - 17466297
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatt 128  Q
    |||||| || |||||||||| ||||||||| |||| ||||||||||||||||||| || ||| || ||||| ||| | ||||| |||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattgaccaatgatatataccatt 17466297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 29990083 - 29989956
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||      
T  29990083 catgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattga 29989984  T
Q  131 taccttaactgtacacaagtggtgtccc 158  Q
    ||||||||  ||||||||||||||||||    
T  29989983 taccttaatggtacacaagtggtgtccc 29989956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 38010663 - 38010790
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||   |||||||||||||||||     
T  38010663 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattg 38010762  T
Q  130 gtaccttaactgtacacaagtggtgtcc 157  Q
    |||||||||  |||||||||||||||||    
T  38010763 gtaccttaatggtacacaagtggtgtcc 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 13478095 - 13478221
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||  |||||||||||||||||| |    
T  13478095 catgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattgg 13478194  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    | ||||||  |||||||||||||||||    
T  13478195 ttccttaatggtacacaagtggtgtcc 13478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 13015502 - 13015380
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| |    
T  13015502 catgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgg 13015403  T
Q  131 taccttaactgtacacaagtggt 153  Q
    ||||||||  |||||||||||||    
T  13015402 taccttaatggtacacaagtggt 13015380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 13086874 - 13086748
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||| |||||||||||||||||| |||||||||  |||||||||||||||||| |    
T  13086874 catgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattgg 13086775  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    ||||||||  |||||||||||||||||    
T  13086774 taccttaatggtacacaagtggtgtcc 13086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 13421060 - 13421186
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||  | ||||||||| |||||||||||||||||||      
T  13421060 catgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattga 13421159  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    ||||||||  ||||||||||| |||||    
T  13421160 taccttaatggtacacaagtgatgtcc 13421186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 37881264 - 37881185
Alignment:
Q  29 accatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttatt 108  Q
    ||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  37881264 accatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 1826380 - 1826258
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||| ||||||| ||| || ||||| ||| | ||||| |||||| ||||     
T  1826380 ccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatataccattg 1826282  T
Q  130 gtaccttaactgtacacaagtggt 153  Q
    |||| ||||  |||||||||||||    
T  1826281 gtactttaatggtacacaagtggt 1826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 11607588 - 11607705
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||| ||| | |||  |||||| |||||| |||| ||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  134 cttaactgtacacaagtgg 152  Q
    |||||  ||| ||||||||    
T  11607687 cttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 19357330 - 19357432
Alignment:
Q  50 aaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaag 149  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||   ||||| |||||| |||| ||||| |||  |||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  150 tgg 152  Q
    |||    
T  19357430 tgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 33858592 - 33858704
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||| |||||| ||| | |||  |||||| ||||||  ||| ||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  134 cttaactgtacaca 147  Q
    |||||  |||||||    
T  33858691 cttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggc 97  Q
    |||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 9827894 - 9827788
Alignment:
Q  46 ttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtaca 145  Q
    |||||||| ||||||||||||||  ||||||||||||| ||||||| |||| | ||||| ||| |  || | |||||| |||| |||||||||  |||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  146 caagtgg 152  Q
    |||||||    
T  9827794 caagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 39570097 - 39570214
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||| ||| || ||||| |||   ||||| |||||| ||||  |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  134 cttaactgtacacaagtgg 152  Q
     ||||   |||||||||||    
T  39570196 tttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 33271721 - 33271678
Alignment:
Q  44 ctttaaaaaacatatatcaaataaagcatttataaagtaacattg 88  Q
    |||||||||| |||||||||||||||||||||| |||||||||||    
T  33271721 ctttaaaaaa-atatatcaaataaagcatttatcaagtaacattg 33271678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 10292989 - 10292897
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatt 128  Q
    ||||||||| |||||||||| ||||  |||||||| || ||| ||| ||||||| ||| |||||| | |||||||   |||||||||||||||||    
T  10292989 gtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgttatataacatt 10292897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 8809690 - 8809817
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||  |||||||||||||||||| |    
T  8809690 catgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattgg 8809789  T
Q  131 taccttaactgtacacaagtggtgtccc 158  Q
    ||||||||  ||||||||||||||||||    
T  8809790 taccttaatggtacacaagtggtgtccc 8809817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 35998374 - 35998249
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||     
T  35998374 ccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgttatataacattg 35998275  T
Q  130 gtaccttaactgtacacaagtggtgt 155  Q
    |||||||||  ||| |||||||||||    
T  35998274 gtaccttaatggtatacaagtggtgt 35998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 29119374 - 29119496
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| || || |||||| ||||| |||   ||||| |||||| ||||     
T  29119374 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatataccattg 29119472  T
Q  130 gtaccttaactgtacacaagtggt 153  Q
    |||||||||  |||||||||||||    
T  29119473 gtaccttaatggtacacaagtggt 29119496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 32676257 - 32676136
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| ||||   | ||| |||   ||||| |||||| ||||     
T  32676257 ccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatataccattg 32676159  T
Q  130 gtaccttaactgtacacaagtgg 152  Q
    |||||||||  ||||||||||||    
T  32676158 gtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 2569152 - 2569037
Alignment:
Q  35 tggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtacc 134  Q
    |||||||| ||||||||||  ||||||||||||||||||  ||| |||||||||||| |||||| ||||| |||    |||| |||||| |||| |||||    
T  2569152 tggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtacc 2569055  T
Q  135 ttaactgtacacaagtgg 152  Q
    ||||  ||||||||||||    
T  2569054 ttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 8462245 - 8462129
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||| | ||||||||||  ||||| ||||||| |||||||||| ||||||||||| |||||| ||| | ||| ||||||| |||||| |||| ||||    
T  8462245 gtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtac 8462147  T
Q  134 cttaactgtacacaagtgg 152  Q
     |||| | |||||||||||    
T  8462146 tttaa-tatacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 35534523 - 35534420
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    |||||||||||| ||||||||||    ||| ||||||| || ||||||| | ||||| |||||||||| ||||| | |   ||||||||||||||||| |    
T  35534523 catgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaatgttatataacattgg 35534428  T
Q  131 taccttaa 138  Q
    || |||||    
T  35534427 tatcttaa 35534420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 16679806 - 16679765
Alignment:
Q  38 cacacactttaaaaaacatatatcaaataaagcatttataaa 79  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  16679806 cacaccctttaaaaaatatatatcaaataaagcacttataaa 16679765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 25161402 - 25161333
Alignment:
Q  59 atcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatt 128  Q
    |||||||||| ||||||||||||||||||| || |||||| ||| | |||  |||||| |||||| ||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccatt 25161333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 8555522 - 8555486
Alignment:
Q  59 atcaaataaagcatttataaagtaacattggtatgtg 95  Q
    |||||||||| |||||||||| |||||||||||||||    
T  8555522 atcaaataaaacatttataaaataacattggtatgtg 8555486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 34245688 - 34245562
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||  |||||||||||||||||||     
T  34245688 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaa 34245589  T
Q  131 taccttaactgtacacaagtggtgtcc 157  Q
    ||||||||  |||||||||||||||||    
T  34245588 taccttaatggtacacaagtggtgtcc 34245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  59 atcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaagtg 151  Q
    ||||||||||||| ||| ||||||||||| ||||||| || |||||||||| ||||||||||||| |||| |||||||||  |||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 5403940 - 5404054
Alignment:
Q  44 ctttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgta 143  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||| |||||| ||||| | | | ||||  |||||| ||||||||||||||  |||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  144 cacaagtggtgtccct 159  Q
    |||||||||| |||||    
T  5404039 cacaagtggtatccct 5404054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 1211898 - 1212014
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||  | |||||| || || ||||  ||||| |||||| |||| ||||    
T  1211898 gtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtac 1211996  T
Q  134 cttaactgtacacaagtg 151  Q
    |||||  |||||||||||    
T  1211997 cttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 32644888 - 32644942
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacatt 87  Q
    |||||||||||| |||||||||| ||||| ||||||||| |||| ||||||||||||    
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatt 32644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 1514916 - 1514798
Alignment:
Q  39 acacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaa 138  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||    
T  1514916 acacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaa 1514817  T
Q  139 ctgtacacaagtggtgtcc 157  Q
      |||||||||||||||||    
T  1514816 tggtacacaagtggtgtcc 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 18168503 - 18168399
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||  |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||| | ||||| ||| ||||||| |||||| |||| ||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  134 cttaa 138  Q
    |||||    
T  18168403 cttaa 18168399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 18632060 - 18631956
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||  |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||| | ||||| ||| ||||||| |||||| |||| ||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  134 cttaa 138  Q
    |||||    
T  18631960 cttaa 18631956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 24337882 - 24338007
Alignment:
Q  32 atgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagt 131  Q
    ||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||  ||||| ||||| ||| | | ||| |||||| ||||  |    
T  24337882 atgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatataccattgct 24337980  T
Q  132 accttaactgtacacaagtggtgtccc 158  Q
    |||||||  ||||||||||||| ||||    
T  24337981 accttaatagtacacaagtggtatccc 24338007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 41179613 - 41179734
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||  | |||||||| |||||| ||||||| ||||||||||||||||| |||| ||| || ||| | |||   ||||| |||||| ||||     
T  41179613 ccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatcattg 41179711  T
Q  130 gtaccttaactgtacacaagtgg 152  Q
    |||||||||  ||||||||||||    
T  41179712 gtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 4708361 - 4708417
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggta 91  Q
    ||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  4708361 gtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggta 4708417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 11254082 - 11254149
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatact 102  Q
    ||||||||| |||||||||   ||||||||||||| |||||||||||||||||||||| |||| |||||    
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact 11254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 32825904 - 32826005
Alignment:
Q  50 aaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaag 149  Q
    |||| |||||||||||||| ||  |||||| |||||||| |||||| |||||||| |||   ||||| |||| ||||||  ||| ||||  |||||||||    
T  32825904 aaaaaatatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtatacaacattgatactttaatggtacacaag 32826003  T
Q  150 tg 151  Q
    ||    
T  32826004 tg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 34392131 - 34392252
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||   ||||| |||||| ||||     
T  34392131 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatataccattg 34392229  T
Q  130 gtaccttaactgtacacaagtgg 152  Q
    |||||| ||  ||||||||||||    
T  34392230 gtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 10163604 - 10163501
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacatta 129  Q
    |||||| ||||| ||||||||||||||||||||||||||  ||||||||||||| ||  |||||||||| | | |||||  ||||||||||||||||||     
T  10163604 ccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacatttttattggtcaatgttatataacattg 10163505  T
Q  130 gtac 133  Q
    ||||    
T  10163504 gtac 10163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 23863853 - 23863926
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactct 104  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  23863853 ccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactct 23863926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 37357988 - 37358092
Alignment:
Q  48 aaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacaca 147  Q
    |||||| | |||| ||||||||||||||||||||||||||| || ||| || ||||| |||| |||||| |||||| |||| |||||||||   ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  148 agtgg 152  Q
    |||||    
T  37358088 agtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 3668059 - 3668112
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaa 83  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||    
T  3668059 ccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 21604055 - 21603959
Alignment:
Q  56 tatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaagtgg 152  Q
    ||||||||||||| |||||||||||||||||||||| |||  | ||| | |||  |||||| |||||| |||| |||||||||  ||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  50 aaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgtacacaag 149  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||| ||||| |||   ||||  |||||| |||| |||||||||  |||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 14565908 - 14566009
Alignment:
Q  35 tggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtacc 134  Q
    |||||||  ||||||||||| |||||||||| ||| | ||||||| ||| |||||||||| ||| |||||  || ||||||| ||||||||||| |||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  135 tta 137  Q
    |||    
T  14566007 tta 14566009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 41095836 - 41095901
Alignment:
Q  30 ccatgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtgg 96  Q
    |||||||||| ||  ||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  41095836 ccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtgg 41095901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 4779692 - 4779649
Alignment:
Q  44 ctttaaaaaacatatatcaaataaagcatttataaagtaacattg 88  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattg 4779649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 34904004 - 34903962
Alignment:
Q  50 aaaacatatatcaaataaagcatttataaagtaacattggtat 92  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||    
T  34904004 aaaaaatatatcaaataaagcatttataaaataacattagtat 34903962  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 3668320 - 3668373
Alignment:
Q  85 attggtatgtggcatactcttattaatcaatgttatataacattagtaccttaa 138  Q
    |||| |||||| || |||||||  |||||||||||||||||||| |||||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaa 3668373  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 48250274 - 48250146
Alignment:
Q  31 catgtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattag 130  Q
    ||||| ||| || |||||||||| | |||||||||||||||| |||||||||||||||||| |||||| ||||| ||| | ||||| |||||| |||| |    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  131 taccttaactgtacacaagtggtgtcccta 160  Q
    ||||||||  ||||||||||||| ||||||    
T  48250175 taccttaatggtacacaagtggtatcccta 48250146  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 35341653 - 35341536
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtac 133  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||| |||||| ||| | |||  |||||| |||||| |||| ||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  134 cttaactgtacacaagtgg 152  Q
    |||||  ||||||||||||    
T  35341554 cttaatggtacacaagtgg 35341536  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 32694624 - 32694721
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagta 132  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||  ||| | ||||| ||| | ||||| |||||| ||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattgatagatgggacactctaatttaccaatggtatatatcattagta 32694721  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 31306951 - 31306983
Alignment:
Q  59 atcaaataaagcatttataaagtaacattggta 91  Q
    |||||||||||||||||||||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggta 31306983  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 13070 - 13176
Alignment:
Q  44 ctttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtaccttaactgta 143  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||  | |||||| || || ||||  ||||| |||||| |||| |||||||||  |||    
T  13070 ctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggta 13168  T
Q  144 cacaagtg 151  Q
    ||||||||    
T  13169 cacaagtg 13176  T

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Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 34306 - 34194
Alignment:
Q  38 cacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactcttattaatcaatgttatataacattagtacctta 137  Q
    ||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||| ||||| |||   ||||  |||||| |||| ||||||||    
T  34306 cacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtacctta 34209  T
Q  138 actgtacacaagtgg 152  Q
    |  ||||||||||||    
T  34208 atggtacacaagtgg 34194  T

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Target: scaffold0519 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 11311 - 11244
Alignment:
Q  34 gtggcacacactttaaaaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatact 102  Q
    ||||||||| |||||||||   ||||||||||||| |||||||||||||||||||||| |||| |||||    
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact 11244  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 23168 - 23222
Alignment:
Q  50 aaaacatatatcaaataaagcatttataaagtaacattggtatgtggcatactct 104  Q
    |||| ||||||||||||||  ||||||||||||| ||||||| |||||| |||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactct 23222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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