View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_120 (Length: 250)

Name: NF0816_low_120
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_120
NF0816_low_120
[»] chr1 (26 HSPs)
chr1 (42-250)||(18325167-18325373)
chr1 (49-135)||(3887339-3887425)
chr1 (139-229)||(49079311-49079401)
chr1 (186-231)||(15452431-15452476)
chr1 (139-231)||(41516885-41516977)
chr1 (49-104)||(47307506-47307561)
chr1 (76-138)||(22548187-22548249)
chr1 (51-135)||(4347052-4347136)
chr1 (75-138)||(213169-213232)
chr1 (184-215)||(6744694-6744725)
chr1 (139-206)||(15478121-15478188)
chr1 (59-138)||(47899371-47899450)
chr1 (145-231)||(9939823-9939909)
chr1 (53-123)||(12655356-12655426)
chr1 (51-113)||(13344851-13344913)
chr1 (184-226)||(17759880-17759922)
chr1 (81-135)||(43541585-43541639)
chr1 (77-138)||(3515943-3516004)
chr1 (49-114)||(26253026-26253091)
chr1 (77-138)||(45557437-45557498)
chr1 (138-206)||(8381881-8381949)
chr1 (169-233)||(24587837-24587901)
chr1 (139-231)||(28083983-28084075)
chr1 (186-230)||(32088669-32088713)
chr1 (52-116)||(38512430-38512494)
chr1 (184-228)||(47322004-47322048)
[»] chr7 (16 HSPs)
chr7 (147-231)||(45369068-45369152)
chr7 (51-137)||(40491688-40491774)
chr7 (139-231)||(15050191-15050282)
chr7 (44-107)||(35812411-35812474)
chr7 (139-206)||(38123768-38123835)
chr7 (163-233)||(45004907-45004977)
chr7 (49-138)||(42481778-42481867)
chr7 (139-231)||(48290289-48290381)
chr7 (184-231)||(12306677-12306724)
chr7 (186-231)||(12306922-12306967)
chr7 (54-135)||(28070813-28070894)
chr7 (58-115)||(34536755-34536812)
chr7 (186-231)||(45004965-45005010)
chr7 (94-139)||(45823310-45823355)
chr7 (186-230)||(21436096-21436140)
chr7 (79-135)||(36021258-36021314)
[»] chr5 (29 HSPs)
chr5 (145-231)||(29922798-29922884)
chr5 (139-228)||(34250449-34250538)
chr5 (50-238)||(10859909-10860103)
chr5 (139-202)||(15368141-15368204)
chr5 (51-135)||(2868313-2868397)
chr5 (186-225)||(12208944-12208983)
chr5 (52-135)||(40910881-40910964)
chr5 (49-98)||(5465398-5465447)
chr5 (83-136)||(10373024-10373077)
chr5 (151-208)||(28973768-28973825)
chr5 (186-231)||(38045394-38045439)
chr5 (51-107)||(14299436-14299492)
chr5 (145-204)||(3043126-3043185)
chr5 (56-135)||(7328524-7328603)
chr5 (164-231)||(10161749-10161816)
chr5 (148-231)||(10898629-10898712)
chr5 (193-224)||(11134290-11134321)
chr5 (44-107)||(14067032-14067095)
chr5 (169-231)||(1105367-1105429)
chr5 (54-120)||(14671137-14671203)
chr5 (49-98)||(6988228-6988277)
chr5 (182-231)||(10860450-10860499)
chr5 (186-231)||(13224714-13224758)
chr5 (54-107)||(29923013-29923066)
chr5 (57-138)||(35108355-35108436)
chr5 (51-100)||(43438590-43438639)
chr5 (57-93)||(1145039-1145075)
chr5 (75-135)||(6414251-6414311)
chr5 (94-138)||(8591704-8591748)
[»] chr4 (28 HSPs)
chr4 (44-118)||(48575487-48575561)
chr4 (49-135)||(24364083-24364169)
chr4 (147-244)||(1099742-1099839)
chr4 (57-113)||(38740287-38740343)
chr4 (51-133)||(43868246-43868328)
chr4 (58-135)||(5025575-5025652)
chr4 (77-121)||(12926922-12926966)
chr4 (184-231)||(25318990-25319037)
chr4 (81-135)||(17897799-17897853)
chr4 (51-136)||(33560461-33560545)
chr4 (187-231)||(33560666-33560710)
chr4 (139-231)||(41058824-41058916)
chr4 (160-231)||(2171706-2171777)
chr4 (169-230)||(471963-472025)
chr4 (48-102)||(12224465-12224519)
chr4 (150-216)||(43075972-43076038)
chr4 (58-135)||(21592545-21592622)
chr4 (187-224)||(24338547-24338584)
chr4 (77-122)||(24370578-24370623)
chr4 (147-208)||(26617745-26617806)
chr4 (49-98)||(34943436-34943485)
chr4 (74-135)||(47509857-47509918)
chr4 (145-206)||(50358134-50358195)
chr4 (76-136)||(8283275-8283335)
chr4 (139-231)||(9082917-9083009)
chr4 (81-121)||(23335265-23335305)
chr4 (186-238)||(29728947-29728999)
chr4 (75-138)||(53158947-53159011)
[»] chr2 (26 HSPs)
chr2 (48-137)||(6948445-6948534)
chr2 (136-208)||(43717237-43717309)
chr2 (51-138)||(11759747-11759834)
chr2 (145-231)||(37420292-37420378)
chr2 (51-135)||(12110937-12111021)
chr2 (139-206)||(7629760-7629827)
chr2 (63-138)||(37745786-37745861)
chr2 (74-132)||(22447527-22447585)
chr2 (74-119)||(7630538-7630583)
chr2 (49-134)||(17220417-17220502)
chr2 (145-206)||(40582653-40582714)
chr2 (141-205)||(1976986-1977050)
chr2 (178-230)||(39702528-39702580)
chr2 (57-135)||(3602420-3602499)
chr2 (184-231)||(11510896-11510943)
chr2 (145-227)||(16519350-16519433)
chr2 (51-118)||(36307075-36307142)
chr2 (184-231)||(36987207-36987254)
chr2 (57-116)||(45000418-45000477)
chr2 (189-231)||(4908737-4908779)
chr2 (57-135)||(38129404-38129482)
chr2 (54-91)||(3654787-3654824)
chr2 (51-135)||(1763283-1763367)
chr2 (186-238)||(6925652-6925704)
chr2 (184-228)||(15928532-15928576)
chr2 (145-205)||(37649595-37649655)
[»] chr6 (22 HSPs)
chr6 (59-135)||(10054955-10055031)
chr6 (139-230)||(7262969-7263060)
chr6 (51-138)||(1500010-1500097)
chr6 (139-230)||(29240548-29240639)
chr6 (51-135)||(19260774-19260858)
chr6 (169-229)||(19260980-19261040)
chr6 (55-140)||(10564807-10564893)
chr6 (145-206)||(34620790-34620851)
chr6 (145-206)||(34748227-34748288)
chr6 (56-107)||(9043723-9043774)
chr6 (76-134)||(3002827-3002885)
chr6 (186-216)||(6214875-6214905)
chr6 (184-225)||(2002566-2002607)
chr6 (55-116)||(3525039-3525100)
chr6 (139-231)||(10400790-10400883)
chr6 (73-138)||(14391015-14391080)
chr6 (66-135)||(20871626-20871695)
chr6 (49-86)||(25208734-25208771)
chr6 (139-231)||(5724725-5724817)
chr6 (100-136)||(10755399-10755435)
chr6 (139-195)||(19601715-19601771)
chr6 (186-230)||(33136579-33136623)
[»] chr3 (27 HSPs)
chr3 (49-135)||(24916592-24916678)
chr3 (140-206)||(3776438-3776504)
chr3 (51-113)||(30958147-30958209)
chr3 (51-113)||(30973959-30974021)
chr3 (139-228)||(3845210-3845299)
chr3 (48-133)||(39657963-39658048)
chr3 (145-206)||(52925731-52925792)
chr3 (57-113)||(31766160-31766216)
chr3 (164-235)||(21513420-21513491)
chr3 (52-135)||(25129430-25129513)
chr3 (63-114)||(49158642-49158693)
chr3 (51-135)||(42644316-42644401)
chr3 (186-231)||(43987647-43987692)
chr3 (139-231)||(1441476-1441568)
chr3 (186-230)||(2410026-2410070)
chr3 (145-225)||(29120128-29120208)
chr3 (48-135)||(27825270-27825357)
chr3 (139-234)||(39256573-39256668)
chr3 (56-115)||(49633997-49634056)
chr3 (49-135)||(25181262-25181348)
chr3 (75-121)||(44771862-44771908)
chr3 (57-110)||(584709-584762)
chr3 (44-113)||(41115275-41115344)
chr3 (49-106)||(48089610-48089667)
chr3 (184-228)||(35950991-35951035)
chr3 (49-121)||(38626764-38626836)
chr3 (55-115)||(53567990-53568050)
[»] scaffold0172 (1 HSPs)
scaffold0172 (51-135)||(15220-15304)
[»] chr8 (27 HSPs)
chr8 (66-138)||(2031884-2031956)
chr8 (51-138)||(10368075-10368162)
chr8 (186-225)||(13929808-13929847)
chr8 (184-231)||(38875358-38875405)
chr8 (140-230)||(11038081-11038171)
chr8 (51-121)||(37159381-37159451)
chr8 (90-135)||(34957018-34957063)
chr8 (58-135)||(41891782-41891859)
chr8 (51-135)||(36779453-36779537)
chr8 (51-107)||(38516360-38516416)
chr8 (180-235)||(34469241-34469296)
chr8 (57-99)||(1373107-1373149)
chr8 (148-230)||(8916821-8916903)
chr8 (193-231)||(36447965-36448003)
chr8 (139-229)||(39648242-39648332)
chr8 (57-135)||(41408258-41408336)
chr8 (184-229)||(4336344-4336389)
chr8 (77-122)||(18355753-18355798)
chr8 (49-138)||(32994128-32994217)
chr8 (139-204)||(35495158-35495223)
chr8 (51-115)||(35550283-35550347)
chr8 (49-85)||(2778354-2778390)
chr8 (57-121)||(5400118-5400182)
chr8 (187-231)||(5997378-5997422)
chr8 (51-115)||(10552892-10552956)
chr8 (57-137)||(38335751-38335830)
chr8 (139-231)||(41614742-41614834)
[»] scaffold1191 (1 HSPs)
scaffold1191 (74-135)||(55-116)
[»] scaffold0571 (1 HSPs)
scaffold0571 (74-135)||(7825-7886)
[»] scaffold0393 (1 HSPs)
scaffold0393 (139-231)||(12402-12495)
[»] scaffold0248 (1 HSPs)
scaffold0248 (49-98)||(13275-13324)
[»] scaffold0361 (1 HSPs)
scaffold0361 (139-197)||(14242-14300)
[»] scaffold0168 (1 HSPs)
scaffold0168 (163-228)||(31748-31813)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 18325373 - 18325167
Alignment:
Q  42 agaaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatacgtt 141  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  18325373 agaaaccattttacattcaactcacttttatgtaaaatcaattttacaaaaccaattcat--aaaaccaatttttgtcaccgtagaaccaaacatatgtt 18325276  T
Q  142 tgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgacttgaaaac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  18325275 tgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttaacttgaaatc 18325176  T
Q  242 agaattagg 250  Q
    |||||||||    
T  18325175 agaattagg 18325167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 3887425 - 3887339
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa-ccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||  ||||||| |||||||||||    
T  3887425 attttacattgaactcacctttatctaaaatca-ttttacaaaaccaattcattcaaaatcaaatttaagtcaccgcagaaccaaaca 3887339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 49079401 - 49079311
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattt 229  Q
    ||||| ||||||||||||||    |||||  ||||||||| ||| ||| ||||||||||||||||||| | |||| |||||||||||||||    
T  49079401 gtttgattccacttttggagtgctcaaaatcgattccagaggtgtagagttgattttgacatgtttggttcttctagagtagaattgattt 49079311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 15452431 - 15452476
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  15452431 aattgattttgacatctttggatgttctcgagtagaattgattttg 15452476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 41516885 - 41516977
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| ||||||||||||||||| |||||   |||| ||| ||| |||||||||| |||||| || | || || |||||||||||||||||||    
T  41516885 gtttggttccacttttggaggagtcaaaatccattctagaggtgtagaattgattatgacatcttggaatgttttcgagtagaattgattttg 41516977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 47307506 - 47307561
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattca 104  Q
    |||||||||||||||||||||||  |||| ||||||||| |||| |||||||||||    
T  47307506 attttacattcaactcacttttaactaaagtcaattttataaaatcaattcattca 47307561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 22548249 - 22548187
Alignment:
Q  76 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||||||||||||| ||||||| | |||| |||||||| |||||| | ||||||||||||    
T  22548249 aaatcaattttacaaaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaacatac 22548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 4347052 - 4347136
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||   |||||||||| ||||||| ||||||   ||||| ||||||||  ||||| | |||||||||    
T  4347052 tttacattcaactcacttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaattttttccaccgcacaaccaaaca 4347136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 213232 - 213169
Alignment:
Q  75 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||| ||||||| | || ||||| | |||||| ||||||||||||||| ||||||||||||||    
T  213232 aaaattaattttatagaatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaacatac 213169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 6744694 - 6744725
Alignment:
Q  184 agaattgattttgacatgtttggattttctcg 215  Q
    ||||||||||||||||||||||||||||||||    
T  6744694 agaattgattttgacatgtttggattttctcg 6744725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 15478188 - 15478121
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||| ||||||||||||||||| ||||  |||||  ||  ||| |||||||||||||||||||||||    
T  15478188 gtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttgg 15478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 47899371 - 47899450
Alignment:
Q  59 caactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    |||||||||||||   | |||||||||||||||| ||||||| |||||| ||||| ||||||  ||| ||| ||||||||    
T  47899371 caactcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaattcttgtcaaagtataacaaaacatac 47899450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 9939909 - 9939823
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||  ||||| ||||| |||||| ||| ||| | |||| |||||||||||||||| |  ||| ||||| |||||||||||    
T  9939909 ttccacttttctaggaggcaaaactgattctagaggtgtaaaattaattttgacatgtttggttcctctagagtataattgattttg 9939823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 12655356 - 12655426
Alignment:
Q  53 tacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccg 123  Q
    |||||||||||| ||||||  |||||||||||| ||| || ||||||||  |||| | |||||||||||||    
T  12655356 tacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatctatttttgtcaccg 12655426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 13344851 - 13344913
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    ||||| |||||||||||||||   |||||||||| ||||||| ||||||| |||||| |||||    
T  13344851 tttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 17759880 - 17759922
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattga 226  Q
    ||||||||||||||||||||| | | |||||||||||||||||    
T  17759880 agaattgattttgacatgtttcgttattctcgagtagaattga 17759922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 43541639 - 43541585
Alignment:
Q  81 aattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||| || ||||||||||| || ||||||||||||||| | |||||||||    
T  43541639 aattttacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaaca 43541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 3515943 - 3516004
Alignment:
Q  77 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||||||||| || ||||||| |||||||||||| |  |||||| | ||||||||||||    
T  3515943 aatcaattttacataatcaattcactcaaaaccaattctaatcaccgcataaccaaacatac 3516004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 26253091 - 26253026
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattt 114  Q
    ||||||| ||||||||| ||||| |   |||| |||||||| || |||||||||||||||||||||    
T  26253091 attttactttcaactcatttttaaaccgaatcgattttacagaatcaattcattcaaaaccaattt 26253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 45557437 - 45557498
Alignment:
Q  77 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||||||||| || ||||| |||||||| ||||||||| ||| | | ||||||||||||    
T  45557437 aatcaattttacacaatcaatttattcaaaatcaatttttgccacagcataaccaaacatac 45557498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 8381881 - 8381949
Alignment:
Q  138 cgtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    |||||| ||| |||| |||||||| ||||| |||||| ||| ||  | |||||||||||||||||||||    
T  8381881 cgtttggttcgacttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttgg 8381949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 24587837 - 24587901
Alignment:
Q  169 tgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgac 233  Q
    |||||| ||| ||| |||||||||| |||||||||||| |  ||| |||||||||||| ||||||    
T  24587837 tgattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttgac 24587901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 28084075 - 28083983
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| |||||||| | |||||| ||||| ||| ||  |  ||| |||||||||| |||||| ||||| | || |||||||||||||||||||    
T  28084075 gtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctgacatatttggttgttttcgagtagaattgattttg 28083983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 32088713 - 32088669
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||    
T  32088713 aattgattttgacatgtttggttgctctcaagtagaattgatttt 32088669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 38512430 - 38512494
Alignment:
Q  52 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 116  Q
    ||||||||||||||||| |||  | ||| |||||||||||| ||||||| | |||| ||||||||    
T  38512430 ttacattcaactcacttatatcaagaattaattttacaaaatcaattcacttaaaatcaattttt 38512494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 47322048 - 47322004
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    ||||||||||||||||||||| | | || ||||||||||||||||    
T  47322048 agaattgattttgacatgttttgttgttgtcgagtagaattgatt 47322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 45369068 - 45369152
Alignment:
Q  147 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||| ||||||||||| ||||| |||| ||| ||| |||||||||| |||||||||| ||||| ||||||||||||||||    
T  45369068 ccacttttgaaggagacaaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgattttg 45369152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 40491688 - 40491774
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 137  Q
    ||||| |||||||||||||||   ||||||||||||||| || ||||||| |||||| ||||| ||||||||| |||||||||||||    
T  40491688 tttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaaccaaacata 40491774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 15050191 - 15050282
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| ||||||||| ||||||| ||||| |||||| ||| ||||||||||||||||||| ||||||| |  ||||  |||||||||||||||    
T  15050191 gtttggttccacttt-ggaggagccaaaattgattctagaagtgaagaattgattttgacctgtttggttactctcatgtagaattgattttg 15050282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 35812411 - 35812474
Alignment:
Q  44 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    |||||||||||||||||||| | |||| |  |||||||||||||||||| ||||||||||||||    
T  35812411 aaactattttacattcaactaattttttttcaaaatcaattttacaaaatcaattcattcaaaa 35812474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 38123835 - 38123768
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||| ||||||||||||||||| ||||| |||||| |||  || |||||||||||| ||||||||||    
T  38123835 gtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgtttgg 38123768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 45004907 - 45004977
Alignment:
Q  163 caaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgac 233  Q
    ||||| |||||| ||| ||| ||||||||||||||||||||||| |  |||| |||| |||||||||||||    
T  45004907 caaaattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgattttgac 45004977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 42481867 - 42481778
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    |||||||||||||||||||||| |  | ||||||||||||| || ||||||| | |||| ||||| || |||||| || | |||||||||    
T  42481867 attttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaattcttttcaccgcaggagcaaacatac 42481778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 48290289 - 48290381
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| || ||||||||||||| |||||| ||||| || | ||    ||||||||||||||||||||||| || || || |||||||||||||    
T  48290289 gtttgatttcacttttggaggatacaaaattgatttcataggttggaaattgattttgacatgtttggatgttttcaagcagaattgattttg 48290381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 12306677 - 12306724
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||||    
T  12306677 agaattgattttgacatgtttggttgctctcaagtagaattgattttg 12306724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 12306922 - 12306967
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||| |  ||| |||||||||||||||||    
T  12306922 aattgattttgacatgtttggttgctcttgagtagaattgattttg 12306967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 28070813 - 28070894
Alignment:
Q  54 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||| ||| |  | |||||||||||||||||  |||| |||||||| |||| || ||||||| | |||||||||    
T  28070813 acattcaactcaatttcagttgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 28070894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 34536755 - 34536812
Alignment:
Q  58 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 115  Q
    |||||||||||||||  ||||| ||||||| | || |||||||||||||| |||||||    
T  34536755 tcaactcacttttattcaaaattaattttatataatcaattcattcaaaatcaatttt 34536812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 45004965 - 45005010
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||| |  |||||| ||||||||||||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttg 45005010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 45823310 - 45823355
Alignment:
Q  94 caattcattcaaaaccaatttttgtcaccgtagaaccaaacatacg 139  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||    
T  45823310 caattcaatcaaaatcaatttttgtcaccgtgtaaccaaacatacg 45823355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 21436140 - 21436096
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    |||||||||||||||||||  || ||||||||||||||| |||||    
T  21436140 aattgattttgacatgttttaatgttctcgagtagaatttatttt 21436096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 36021314 - 36021258
Alignment:
Q  79 tcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||  |||| ||||| | |||||| |||||||||||||| ||||||||||||    
T  36021314 tcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaaca 36021258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 29922798 - 29922884
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||| |||||| ||||| |||||| ||  ||| ||||||||||||||||||||||| | |||||||| |||||||||||||    
T  29922798 ttccactttttgaggagtcaaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgattttg 29922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 34250538 - 34250449
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    ||||| ||||||||||| |||||  | || |||||| ||||||| ||||||| ||||||||||||||| || ||| ||||||||||||||    
T  34250538 gtttggttccacttttgaaggagttataattgattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgatt 34250449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 10860103 - 10859909
Alignment:
Q  50 ttttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac------gtttg 143  Q
    ||||||||||||||||| ||||   ||||||| ||||| | || ||||  |||||||| |||||||| || ||| | ||||||| | ||      |||||    
T  10860103 ttttacattcaactcacatttagccaaaatcagttttatagaatcaatatattcaaaatcaatttttatcgccgcacaaccaaaaagacatgtatgtttg 10860004  T
Q  144 tttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgacttgaa 238  Q
     ||||||||||||| ||| ||||| | |||  ||| ||| |||| |||||||||| |||||| || |||||| |||||||||||| | |||||||    
T  10860003 gttccacttttggaagaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaa 10859909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 15368141 - 15368204
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgt 202  Q
    ||||| ||||||||||||||||| ||||| |||||| |||| || |||||||||||||||||||    
T  15368141 gtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 2868397 - 2868313
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||  ||||||||||| |||||||  |||||    |||| ||||||||||||| || ||||||||||    
T  2868397 tttacattcaactcacttttaactaaaatcaattctacaaaattaattctactaaaatcaatttttgtcactgtggaaccaaaca 2868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 12208983 - 12208944
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattg 225  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12208983 aattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 40910964 - 40910881
Alignment:
Q  52 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||  ||||| |||||||||||| || |||||| |||| |||||| ||| | |  |||||||||||    
T  40910964 ttacattcaactcacttttattcaaaataaattttacaaaatcacttcatttaaaatcaatttatgttagcaaagaaccaaaca 40910881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 5465447 - 5465398
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 98  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||| |||||    
T  5465447 atttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 10373024 - 10373077
Alignment:
Q  83 ttttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 136  Q
    ||||||||||  |||||||| |||| ||||||||||||| ||||||||||||||    
T  10373024 ttttacaaaattaattcatttaaaatcaatttttgtcacagtagaaccaaacat 10373077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 28973768 - 28973825
Alignment:
Q  151 ttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 208  Q
    ||||||||||| | ||| |||||| ||||||| |||||||||||||| ||||||||||    
T  28973768 ttttggaggagcctaaattgattctagatgtgtagaattgattttgatatgtttggat 28973825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 38045394 - 38045439
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||    
T  38045394 aattgattttgacatgtttgaatgttctcaagtagaattgattttg 38045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 14299436 - 14299492
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    ||||| |||||||||||||||| || ||||||||||||| || ||||||| ||||||    
T  14299436 tttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaa 14299492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 3043185 - 3043126
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgttt 204  Q
    |||||||| |||||||  ||||| |||||| ||| ||| |||||||||||||||||||||    
T  3043185 ttccacttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgttt 3043126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 7328603 - 7328524
Alignment:
Q  56 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||| ||||||  | |||||| |||||| || ||||||||| |||| || |||||||||| | |||||||||||    
T  7328603 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 7328524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 10161749 - 10161816
Alignment:
Q  164 aaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||  | ||||||| ||||||||| ||||    
T  10161749 aaaattgattctagatgtgtagaattgatcttgacatgtttgattgttctcgaatagaattgactttg 10161816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 10898629 - 10898712
Alignment:
Q  148 cacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||  ||||| |||||| |||  ||  ||||| |||||||||||||||| |  ||||||||| |||||||||||    
T  10898629 cacttttggaggaatcaaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttg 10898712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 11134290 - 11134321
Alignment:
Q  193 tttgacatgtttggattttctcgagtagaatt 224  Q
    ||||||||||||||||||||||||||||||||    
T  11134290 tttgacatgtttggattttctcgagtagaatt 11134321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 14067095 - 14067032
Alignment:
Q  44 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||  ||||| |||||| ||||    
T  14067095 aaactattttacatttaactcacttttaatcaaaatcaattttacctaaccatttcattaaaaa 14067032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 1105367 - 1105429
Alignment:
Q  169 tgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||| ||| ||| | ||||||||||||||| ||||| | ||||| ||||||||||||||||    
T  1105367 tgattctagaggtgtataattgattttgacatttttggctgttctcaagtagaattgattttg 1105429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 14671137 - 14671203
Alignment:
Q  54 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtca 120  Q
    |||||||| |||||||||   | ||||||||| |||||| |||||||||||||| || |||||||||    
T  14671137 acattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcattttttgtca 14671203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 6988228 - 6988277
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 98  Q
    |||||| |||||||| |||||||  ||||||||||||||||||| |||||    
T  6988228 attttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 10860499 - 10860450
Alignment:
Q  182 gaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||||||| |||| | || || |||||||||||    
T  10860499 gaagaattgattttgacatgtttggtttttattgaatataattgattttg 10860450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 13224758 - 13224714
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||    
T  13224758 aattgattttgacatgtttggatgttc-cgagtataattgattttg 13224714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 29923013 - 29923066
Alignment:
Q  54 acattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    ||||||||||||||| ||   ||||||||||||||| || ||||||||||||||    
T  29923013 acattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaa 29923066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 35108355 - 35108436
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||| | |||||| |||||||||||||||| ||  |||||| ||||||  ||||||| ||| || | ||||||||||||    
T  35108355 ttcaactaatttttatttaaaatcaattttacagaattaattcactcaaaataaatttttttcatcgcaaaaccaaacatac 35108436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 43438639 - 43438590
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattca 100  Q
    |||||||| ||||||||||||| ||||| |||||||||| || |||||||    
T  43438639 tttacatttaactcacttttatctaaaaacaattttacataatcaattca 43438590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 1145039 - 1145075
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaac 93  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  1145039 ttcaactcacttttaaataaaatcaattctacaaaac 1145075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 6414251 - 6414311
Alignment:
Q  75 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||| |||||||||||| ||||||||||||||  | ||||| ||| |||| |||||||||    
T  6414251 aaaattaattttacaaaatcaattcattcaaaaatattttttatcaacgtaaaaccaaaca 6414311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 8591704 - 8591748
Alignment:
Q  94 caattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||| |||||| |||| |||||||||| ||||||||||||||    
T  8591704 caattcactcaaaatcaatatttgtcaccgcagaaccaaacatac 8591748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 48575487 - 48575561
Alignment:
Q  44 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgt 118  Q
    |||| ||||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||||  |||||||||    
T  48575487 aaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaatttttgt 48575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 24364169 - 24364083
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||||||| |||||||||   | ||||||||||||| || |||||||||||||| |||||||||||| | || |||||||||    
T  24364169 attttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtcatcataaaaccaaaca 24364083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 1099742 - 1099839
Alignment:
Q  147 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgacttgaaaacaga 244  Q
    ||||||||||||||||||||| |||||| |||  || |||||||||||||| || ||||| |  ||||||| ||||||||||||| || || ||||||    
T  1099742 ccacttttggaggagacaaaattgattctagagatgcagaattgattttgaaatatttggttgctctcgagcagaattgattttgcctcgagaacaga 1099839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 38740343 - 38740287
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||    
T  38740343 ttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 43868246 - 43868328
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaa 133  Q
    ||||| ||||||| |||||||  || ||| |||||||||||| |||||||||||||| |||||||| | ||| ||||||||||    
T  43868246 tttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaatttttataaccatagaaccaaa 43868328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 5025575 - 5025652
Alignment:
Q  58 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||||| ||  ||||||||||| ||||||| ||||||| |||||| ||||||| ||||||| | |||||||||    
T  5025575 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaaca 5025652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 12926966 - 12926922
Alignment:
Q  77 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  12926966 aatcaattttataaaaccaattcattcaaaatcaatttttgtcac 12926922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 25318990 - 25319037
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||    
T  25318990 agaattgattttgacatgtttggttgctctcgagtagaattgattttg 25319037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 17897853 - 17897799
Alignment:
Q  81 aattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||| |||||| ||||||| |||||| ||||||||||||||| |||||||||||    
T  17897853 aatttgacaaaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 33560545 - 33560461
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 136  Q
    ||||||||||||||||||| | |  ||||| ||||||| |||  ||||||||||||| || ||||||||||| |||||| ||||||    
T  33560545 tttacattcaactcactttca-agcaaatccattttacgaaattaattcattcaaaatcattttttgtcaccttagaactaaacat 33560461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 33560710 - 33560666
Alignment:
Q  187 attgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||||||| |  |||||||||||||||||||||    
T  33560710 attgattttgacatgtttggttgctctcgagtagaattgattttg 33560666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 41058824 - 41058916
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| |||||||||| || ||| | ||| |||||| | | | | |||||||||| |||||||||||||| || ||||||| |||||||||||    
T  41058824 gtttggttccacttttagatgagcctaaattgattctaaaggagtagaattgattgtgacatgtttggatgttttcgagtaaaattgattttg 41058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2171706 - 2171777
Alignment:
Q  160 agacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||| |||||| |||  || ||||||  ||||||||||||||||| |||||||||| |||||| ||||    
T  2171706 agacaaaattgattctagagttgtagaatttcttttgacatgtttggatgttctcgagtaaaattgactttg 2171777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 472025 - 471963
Alignment:
Q  169 tgattccagatgtgaagaattgatttt-gacatgtttggattttctcgagtagaattgatttt 230  Q
    |||||| ||| ||| |||||||||||| |||||||||| || || ||||||||||||||||||    
T  472025 tgattctagaagtgtagaattgatttttgacatgtttgaatgttgtcgagtagaattgatttt 471963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 12224465 - 12224519
Alignment:
Q  48 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcatt 102  Q
    |||||| ||||||||| |||||||  |||||| |||||||||||| |||||||||    
T  12224465 tattttgcattcaacttacttttaactaaaataaattttacaaaatcaattcatt 12224519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 43075972 - 43076038
Alignment:
Q  150 cttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcga 216  Q
    |||||||||||| ||||| |||||| ||| ||| |||||||||||| |||| |||| || |||||||    
T  43075972 cttttggaggaggcaaaattgattctagaggtgcagaattgattttaacatatttgaatgttctcga 43076038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 21592545 - 21592622
Alignment:
Q  58 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||||||||  |  ||||||| ||| |||| |||||||||||||| ||| |||||| |||| | |||||||||    
T  21592545 tcaactcacttttagttggaatcaatcttataaaatcaattcattcaaaatcaaattttgttaccgcaaaaccaaaca 21592622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 24338547 - 24338584
Alignment:
Q  187 attgattttgacatgtttggattttctcgagtagaatt 224  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  24338547 attgattttgacatgtttggatgttctcgagtaaaatt 24338584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 24370578 - 24370623
Alignment:
Q  77 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcacc 122  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  24370578 aatcaattttacaaaatcaattaattcaaaatcaacttttgtcacc 24370623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 26617806 - 26617745
Alignment:
Q  147 ccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 208  Q
    ||||||||||| | |  |||| |||||| ||||||| | |||||||||||||||||||||||    
T  26617806 ccacttttggatgtgctaaaattgattctagatgtgtaaaattgattttgacatgtttggat 26617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 34943436 - 34943485
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 98  Q
    ||||||||||||||||| |||||| |||||| ||||||| |||| |||||    
T  34943436 attttacattcaactcaattttatctaaaattaattttataaaatcaatt 34943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 47509918 - 47509857
Alignment:
Q  74 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||  ||||| || ||||||||||||| |||||  | |||||||||    
T  47509918 taaaatcaattttacaaaattaattcttttaaaaccaatttttatcacctcaaaaccaaaca 47509857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 50358195 - 50358134
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    |||||||| ||| ||||| |||| |||||| ||| ||| |||||||||||||||||| ||||    
T  50358195 ttccacttctggtggagaaaaaattgattctagaggtgtagaattgattttgacatgcttgg 50358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 8283335 - 8283275
Alignment:
Q  76 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacat 136  Q
    |||||||||||| |||  |||||||||||||| ||||||| ||||||| | || |||||||    
T  8283335 aaatcaattttaaaaactcaattcattcaaaatcaattttggtcaccgcacaatcaaacat 8283275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 9083009 - 9082917
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| |||||||| |||||||   |||| ||||| ||||||   |||||| ||| |||||||||||||| ||||  | ||||||||||||||    
T  9083009 gtttggttccacttctggaggaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttg 9082917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 23335305 - 23335265
Alignment:
Q  81 aattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  23335305 aattttacaaaatcatttcattcaaaatcaatttttgtcac 23335265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 29728947 - 29728999
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttgacttgaa 238  Q
    |||||||||||||| |||||| |  |||||||||||||||||| | |||||||    
T  29728947 aattgattttgacaagtttggttgctctcgagtagaattgattataacttgaa 29728999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 53159011 - 53158947
Alignment:
Q  75 aaaatcaattttacaaaaccaattcattcaaaaccaa-tttttgtcaccgtagaaccaaacatac 138  Q
    |||||||||||||||  | ||||||| |||||| ||| |||||||||||| | ||||||||||||    
T  53159011 aaaatcaattttacatgatcaattcactcaaaatcaactttttgtcaccgcaaaaccaaacatac 53158947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 6948534 - 6948445
Alignment:
Q  48 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 137  Q
    |||||||| ||||||||| ||| |   ||||||||||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||    
T  6948534 tattttaccttcaactcaatttcaatcaaaatcaattttacataaccaattcattcaaaatcaactattgtctccgtagaaccaaacata 6948445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 43717237 - 43717309
Alignment:
Q  136 tacgtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggat 208  Q
    |||||||| || |||||||||||| |  |||| |||||| ||||||| |||||||||||||||||||||||||    
T  43717237 tacgtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttggat 43717309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 11759834 - 11759747
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||| |||||||||||||||   |||||||||||||||||| ||||||| |||||  |||||||| |||||  | ||||||||||||    
T  11759834 tttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttttttcacctcataaccaaacatac 11759747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 37420378 - 37420292
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||| |||   ||| |||||| ||| ||| ||||||||||||||||||||||| ||  || |||||||||||||||||    
T  37420378 ttccacttttggaagagtgcaaattgattctagaggtgtagaattgattttgacatgtttggcttccctagagtagaattgattttg 37420292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 12110937 - 12111021
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||| ||||||||||||||||   ||||||||||| |||||| ||||||  |||||| ||||||| ||||||| | |||||||||    
T  12110937 tttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaaca 12111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 7629760 - 7629827
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||| ||||||||||||||||| ||| | |||||| ||| ||| ||||||||||||| |||||||||    
T  7629760 gtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttgg 7629827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 37745861 - 37745786
Alignment:
Q  63 tcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||||| | ||||||||||||||| || ||||||| |||||| ||||| || |||||| | ||||||||||||    
T  37745861 tcacttttagacaaaatcaattttacataatcaattcactcaaaatcaattattatcaccgcaaaaccaaacatac 37745786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 22447527 - 22447585
Alignment:
Q  74 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaa 132  Q
    ||||||||||||||| ||| |||||||||||| | ||| |||||||||||||| |||||    
T  22447527 taaaatcaattttacgaaagcaattcattcaatatcaaattttgtcaccgtagtaccaa 22447585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 7630538 - 7630583
Alignment:
Q  74 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtc 119  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||    
T  7630538 taaaatcaattttacaaaatcaattcattcaaaatcaatgtttgtc 7630583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 17220417 - 17220502
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaac 134  Q
    |||||||||| || |||| ||||  |||| ||||||||||||||| |||||| |||||| ||||||| | |||  |||||||||||    
T  17220417 attttacattaaaatcacatttaactaaagtcaattttacaaaactaattcaatcaaaatcaattttagccactatagaaccaaac 17220502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 40582653 - 40582714
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||||||||||| ||| ||||| |||||| ||| ||| |||||||||||| ||||||||||    
T  40582653 ttccacttttggaagagccaaaattgattctagaggtgtagaattgattttaacatgtttgg 40582714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 1977050 - 1976986
Alignment:
Q  141 ttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttg 205  Q
    ||||||||||||||||||||| ||||| |||||| ||| ||    ||||||||||||||||||||    
T  1977050 ttgtttccacttttggaggagccaaaattgattctagaggtttgaaattgattttgacatgtttg 1976986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 39702580 - 39702528
Alignment:
Q  178 atgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    ||||| |||||  ||||||||||||||| || |||||||||||||||||||||    
T  39702580 atgtgtagaataaattttgacatgtttgtatgttctcgagtagaattgatttt 39702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 3602499 - 3602420
Alignment:
Q  57 ttcaactcacttttatataaaatcaatttta-caaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||||||||| | |||||||||| || ||||| ||||||| | |||| |||||||  |||||| |||||||||||    
T  3602499 ttcaactcacttttagacaaaatcaattctatcaaaatcaattcagtaaaaatcaattttcatcaccgcagaaccaaaca 3602420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 11510896 - 11510943
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||| |||||| |||||||||| || |||||||||||||||||||    
T  11510896 agaattggttttgatatgtttggatgttttcgagtagaattgattttg 11510943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 16519350 - 16519433
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctc-gagtagaattgat 227  Q
    ||||||||||||||||  ||||| |||||| ||| ||| ||||||||||||   ||||||||| ||| || |||||||||||||    
T  16519350 ttccacttttggaggaagcaaaattgattctagaggtgtagaattgattttattatgtttggaatttatctgagtagaattgat 16519433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 36307075 - 36307142
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgt 118  Q
    ||||| ||||||||||||||||  | ||||||||||||| || ||||||| |||| | ||||||||||    
T  36307075 tttacgttcaactcacttttatccataatcaattttacataatcaattcactcaagatcaatttttgt 36307142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 36987254 - 36987207
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||||||||||||| | | ||||| |||||||||||    
T  36987254 agaattgattttgacatgtttggattcttttgagtataattgattttg 36987207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 45000477 - 45000418
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 116  Q
    |||||||||||||||  |||||||||||||||| || ||||| |||||||| ||| ||||    
T  45000477 ttcaactcacttttaggtaaaatcaattttacataatcaatttattcaaaatcaaatttt 45000418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 4908737 - 4908779
Alignment:
Q  189 tgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||| || || |||||||||||||||||||    
T  4908737 tgattttgacatgtttgtatgttttcgagtagaattgattttg 4908779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 38129482 - 38129404
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||| ||||||||||  || |||| |||||||| || |||||||||||||| ||||||||||| |   |||||||||||    
T  38129482 ttcatctcacttttagttagaatccattttacagaatcaattcattcaaaatcaatttttgtcgcaacagaaccaaaca 38129404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 3654824 - 3654787
Alignment:
Q  54 acattcaactcacttttatataaaatcaattttacaaa 91  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3654824 acattcaactcacttttaactaaaatcaattttacaaa 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 1763283 - 1763367
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||| |||||||||| |||||   |||||||||||||||||| |||||   |||||| ||||| | ||||||| | |||||||||    
T  1763283 tttaaattcaactcaattttaaccaaaatcaattttacaaaatcaattttatcaaaatcaattctcgtcaccgcacaaccaaaca 1763367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 6925652 - 6925704
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttgacttgaa 238  Q
    |||| ||||||||||||||| || |||| |||||||||||||| | |||||||    
T  6925652 aattaattttgacatgtttgtatattcttgagtagaattgattcttacttgaa 6925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 15928576 - 15928532
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    ||||||||||||||||||||||| | || | ||||||||||||||    
T  15928576 agaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 37649655 - 37649595
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttg 205  Q
    ||||||||||||||||| ||||| ||||||  || ||   |||||||||||||||||||||    
T  37649655 ttccacttttggaggagtcaaaattgattcttgaggtatggaattgattttgacatgtttg 37649595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 10055031 - 10054955
Alignment:
Q  59 caactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||| |||||  ||| |||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||    
T  10055031 caactcaattttaactaatatcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaaca 10054955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 7262969 - 7263060
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    ||||| |||||||||| || ||| ||||| |||||| ||| ||| ||||||||||||||||| || |||| |||||||||| ||||||||||    
T  7262969 gtttggttccacttttagatgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt 7263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 1500010 - 1500097
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    |||||| ||||||| ||||||   |||||||||||||||||| ||||||| |||||| |||||||||||| |  ||||||||| ||||    
T  1500010 tttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttttgtcaactcagaaccaaaaatac 1500097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 29240639 - 29240548
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    ||||| |||||||||||| |||  ||||| |||||| ||| ||| | |||||||||||||||||| |||| || || |||||||||||||||    
T  29240639 gtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 19260858 - 19260774
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||| |||||||||| |||||   | ||||||||||||| |||||| |||||||||| || |||||||||||| | |||||||||    
T  19260858 tttatattcaactcaattttagccagaatcaattttacagaaccaaatcattcaaaatcattttttgtcaccgcacaaccaaaca 19260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 19261040 - 19260980
Alignment:
Q  169 tgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattt 229  Q
    |||||||||| |||  |||||||||||||||||||||||| ||||||||  ||||||||||    
T  19261040 tgattccagaagtgttgaattgattttgacatgtttggatgttctcgagatgaattgattt 19260980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 10564893 - 10564807
Alignment:
Q  55 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaa-tttttgtcaccgtagaaccaaacatacgt 140  Q
    |||||||||||||| ||  |||||  |||||||||||| || || |||||||| ||| |||||||||||| ||||||||||| ||||    
T  10564893 cattcaactcacttctaactaaaagaaattttacaaaatcagttaattcaaaatcaattttttgtcaccgcagaaccaaacacacgt 10564807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 34620790 - 34620851
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||||||||||||||  ||||| |||||| | | ||| |||||||||||||||||||||||    
T  34620790 ttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttgg 34620851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 34748227 - 34748288
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||||||||||||||  ||||| |||||| | | ||| |||||||||||||||||||||||    
T  34748227 ttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttgg 34748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 9043774 - 9043723
Alignment:
Q  56 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    ||||||||||||||||  ||||||||||| ||||||| ||||||||| ||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaa 9043723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 3002827 - 3002885
Alignment:
Q  76 aaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaac 134  Q
    ||||||||| || |||| |||||||||||||| ||||| || ||||||| |||||||||    
T  3002827 aaatcaattctagaaaatcaattcattcaaaaacaattgttatcaccgtggaaccaaac 3002885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 6214905 - 6214875
Alignment:
Q  186 aattgattttgacatgtttggattttctcga 216  Q
    |||||||||||||||||||||||||||||||    
T  6214905 aattgattttgacatgtttggattttctcga 6214875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 2002607 - 2002566
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattg 225  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  2002607 agaattgattttgacatgtttggttgttttcgagtagaattg 2002566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 3525039 - 3525100
Alignment:
Q  55 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattttt 116  Q
    |||||||||||||||||   | ||||||||||||| || ||||||||||||||  |||||||    
T  3525039 cattcaactcacttttagccacaatcaattttacataatcaattcattcaaaattaattttt 3525100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 10400883 - 10400790
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggatt-ttctcgagtagaattgattttg 231  Q
    ||||| ||||||| ||||||||  ||||| |||||| ||| ||| | |||||||||||| |||||||| ||  | ||||||||||||| |||||    
T  10400883 gtttggttccactcttggaggatgcaaaattgattctagaggtgtataattgattttgatatgtttggtttgctttcgagtagaattgtttttg 10400790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 14391015 - 14391080
Alignment:
Q  73 ataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||||||||| |||| | |||| |||| |||| ||||| |||| |||| ||||||||||||||    
T  14391015 ataaaatcaatttcacaacatcaatgcatttaaaatcaattgttgtaaccgcagaaccaaacatac 14391080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 20871626 - 20871695
Alignment:
Q  66 cttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||| |||||||||||||||| || ||||||| | |||| ||||| || ||||  ||||||||||||    
T  20871626 cttttatctaaaatcaattttacacaatcaattcaataaaaatcaattattatcactatagaaccaaaca 20871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 25208734 - 25208771
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaatttt 86  Q
    |||||||||||||||||||||||  |||||||||||||    
T  25208734 attttacattcaactcacttttaattaaaatcaatttt 25208771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 5724817 - 5724725
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| |||||||| | |||| | ||||| | |||| ||| ||| |||||||||| ||||||||||||||  | ||  |||||||||||||||    
T  5724817 gtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttg 5724725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 10755435 - 10755399
Alignment:
Q  100 attcaaaaccaatttttgtcaccgtagaaccaaacat 136  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  10755435 attcaaaatcaatttttgtcaccgcagaaccaaacat 10755399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 19601715 - 19601771
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgatttt 195  Q
    ||||| ||||||||||||||||| ||||| ||||||||||  || ||||||| ||||    
T  19601715 gtttggttccacttttggaggagtcaaaattgattccagagatgtagaattgttttt 19601771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 33136623 - 33136579
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||    
T  33136623 aattgattttgacatgtttggttgctctcgagtataattgatttt 33136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 24916592 - 24916678
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||||     |||||||||||||||| ||| || |||||||  |||||||||||||| |||||||||||    
T  24916592 attttacattcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaaca 24916678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 3776438 - 3776504
Alignment:
Q  140 tttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    |||| ||||||||||||||||||||||| || ||  ||| ||| |||||||||||||||||||||||    
T  3776438 tttggttccacttttggaggagacaaaattggttatagaggtgtagaattgattttgacatgtttgg 3776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 30958147 - 30958209
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    |||||||||||||||| ||||   |||||||||||||||||| |||||||||||||| |||||    
T  30958147 tttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 30973959 - 30974021
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    |||||||||||||||| ||||   |||||||||||||||||| |||||||||||||| |||||    
T  30973959 tttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 3845299 - 3845210
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    ||||| |||||||||||||| |  ||||| |||||| ||| ||| ||||||||||||||||||||||  |  |||| |||||||||||||    
T  3845299 gtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 39658048 - 39657963
Alignment:
Q  48 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaa 133  Q
    |||||||||||||||  |||||||  |||||||||||||||| || ||||| |||||||| |||||||| | | |||| |||||||    
T  39658048 tattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaatttttattatcgtataaccaaa 39657963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 52925792 - 52925731
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttgg 206  Q
    ||||||||||||||||| ||||| |||||| ||| ||| | |||||||||||||||||||||    
T  52925792 ttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttgg 52925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 31766216 - 31766160
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||| |||||    
T  31766216 ttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 21513491 - 21513420
Alignment:
Q  164 aaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgactt 235  Q
    |||| |||||| ||| ||| |||||||||||| ||||| |||||| ||||| ||||||||||||||| ||||    
T  21513491 aaaattgattctagaggtggagaattgattttaacatgcttggatgttctcaagtagaattgattttaactt 21513420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 25129513 - 25129430
Alignment:
Q  52 ttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||    |||||||||||||| | |||||||||||| | |||||| ||||||   |||||||||||    
T  25129513 ttacattcaactcacttttatcctgaatcaattttacaacatcaattcattcaagatcaatttatgtcactagagaaccaaaca 25129430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 49158642 - 49158693
Alignment:
Q  63 tcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaattt 114  Q
    |||||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  49158642 tcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaattt 49158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 42644316 - 42644401
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaa-ttttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||  ||||||||| ||||| |||| ||||||| |||||| ||||| |  |||||| | |||||||||    
T  42644316 tttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaattctcatcaccgcataaccaaaca 42644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 43987692 - 43987647
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  43987692 aattgattttgacatgtttggatgttcttgagtacaattgattttg 43987647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 1441568 - 1441476
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| |||||||||||||| |  ||||| |  ||| ||| ||| |||||||| |||||||||||||| || | | |||||||||||||||||    
T  1441568 gtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgattttg 1441476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 2410070 - 2410026
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||    
T  2410070 aatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 29120208 - 29120128
Alignment:
Q  145 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattg 225  Q
    ||||| |||| |||||| ||||| |||||||| ||||| |||||| ||| ||||||  ||| || ||||||||||||||||    
T  29120208 ttccatttttagaggaggcaaaattgattccaaatgtgtagaattaattctgacatagttgcatgttctcgagtagaattg 29120128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 27825357 - 27825270
Alignment:
Q  48 tattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||| |||||||| |||||||   | ||||||||||| ||||  ||||||||||||| |||||| ||| |||| | |||||||||    
T  27825357 tattttatattcaactaacttttagtcataatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaaca 27825270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 39256573 - 39256668
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgact 234  Q
    ||||| |||||||||||||| |  ||||| |  ||| ||| ||| ||||||||||||||||||||||  |  |||| ||||||||||| |||||||    
T  39256573 gtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttgacatgtttgattactctcaagtagaattgactttgact 39256668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 49634056 - 49633997
Alignment:
Q  56 attcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 115  Q
    ||||||||||||||||  | |||| |||||||||||| ||||||| |||||| |||||||    
T  49634056 attcaactcacttttaacttaaattaattttacaaaatcaattcaatcaaaatcaatttt 49633997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 25181262 - 25181348
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||| ||||||||||||   |||||||||| ||||||| ||||||| |||| | ||||| | | ||||| | |||||||||    
T  25181262 attttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaattctagccaccgcataaccaaaca 25181348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 44771862 - 44771908
Alignment:
Q  75 aaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    ||||||||||||||| || |||||||||||||| ||||| |||||||    
T  44771862 aaaatcaattttacataatcaattcattcaaaatcaattcttgtcac 44771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 584762 - 584709
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaacca 110  Q
    ||||||| | |||||  ||||||||||||||||||| ||||||| |||||||||    
T  584762 ttcaacttaattttagctaaaatcaattttacaaaatcaattcactcaaaacca 584709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 41115344 - 41115275
Alignment:
Q  44 aaactattttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatt 113  Q
    |||| ||||||||||||||||| | |||   |||||||||| ||||||| ||||||||||| || |||||    
T  41115344 aaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 48089667 - 48089610
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaa 106  Q
    |||||||||||||||||||||||  || ||||||||||| | || ||||| |||||||    
T  48089667 attttacattcaactcacttttaactagaatcaattttaaagaatcaatttattcaaa 48089610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 35950991 - 35951035
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    |||||||| ||||||| |||||| | |||||||||||||||||||    
T  35950991 agaattgagtttgacaggtttggttgttctcgagtagaattgatt 35951035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 38626764 - 38626836
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    |||| ||||||||||||||||||  |||| || | |||||| || ||||||||| |||| |||||| ||||||    
T  38626764 atttcacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 38626836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 53567990 - 53568050
Alignment:
Q  55 cattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 115  Q
    |||||||||||||||||   ||||||||||||  |||| ||||||| |||||| |||||||    
T  53567990 cattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 15304 - 15220
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||| ||||||||||||||||   ||||||||||| |||||| ||||||  |||||| ||||||| ||||||| | |||||||||    
T  15304 tttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaaca 15220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 2031956 - 2031884
Alignment:
Q  66 cttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    |||||| ||||||| ||||||||||||  ||||| ||||||| |||||||| ||||| || ||||||||||||    
T  2031956 cttttaaataaaataaattttacaaaataaattctttcaaaatcaatttttctcaccataaaaccaaacatac 2031884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 10368075 - 10368162
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||| |||||||||||||||   |||||||||||||||||| ||||||| |||||| ||||| || |||| |   ||||||||||||    
T  10368075 tttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaattcttatcactgcgaaaccaaacatac 10368162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 13929847 - 13929808
Alignment:
Q  186 aattgattttgacatgtttggattttctcgagtagaattg 225  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  13929847 aattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 38875405 - 38875358
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||||||||| ||||||| || ||||||||||||||    
T  38875405 agaattgattttgacatgtttgaattttcttgaatagaattgattttg 38875358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 11038081 - 11038171
Alignment:
Q  140 tttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    |||||||  |||||| || ||||||||| |||||| ||| ||  | ||||||||||||||||||||||| ||||||| | || ||||||||    
T  11038081 tttgttttaactttttgacgagacaaaattgattctagaggtatataattgattttgacatgtttggatgttctcgaatggagttgatttt 11038171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 37159451 - 37159381
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    |||||||||||||| ||||||  |||||| ||||||||| || |||||| |||||||  ||||||||||||    
T  37159451 tttacattcaactcccttttagttaaaattaattttacacaatcaattcgttcaaaattaatttttgtcac 37159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 34957063 - 34957018
Alignment:
Q  90 aaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||| |||||||||||| || |||||||||||    
T  34957063 aaaccaattcattcaaaatcaatttttgtcagcgcagaaccaaaca 34957018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 41891859 - 41891782
Alignment:
Q  58 tcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||||| ||  ||||||||||| ||||||| ||||||| ||||||  |||||| ||||||| | |||||||||    
T  41891859 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaattaattttagtcaccgcataaccaaaca 41891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 36779453 - 36779537
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    |||||||||||||||||||||   |||||||||| ||||||| |||||   |||||| ||||| | ||||||| | |||||||||    
T  36779453 tttacattcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaaca 36779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 38516360 - 38516416
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaa 107  Q
    ||||||||||||||||| ||||  |||||||||| ||||||| ||||||| ||||||    
T  38516360 tttacattcaactcactattatcgaaaatcaattctacaaaatcaattcactcaaaa 38516416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 34469241 - 34469296
Alignment:
Q  180 gtgaagaattgattttgacatgtttggattttctcgagtagaattgattttgactt 235  Q
    |||| |||||||||||||||||||| ||| ||||| |||| |||| ||||||||||    
T  34469241 gtgacgaattgattttgacatgttttgatgttctcaagtataattaattttgactt 34469296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 1373107 - 1373149
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattc 99  Q
    ||||||||||||||||  |||||||||||||||||| ||||||    
T  1373107 ttcaactcacttttatccaaaatcaattttacaaaatcaattc 1373149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 8916903 - 8916821
Alignment:
Q  148 cacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatttt 230  Q
    |||||||||||||| ||||| |||||| ||| |   | |||||||||||||||  |||||| || | ||||||||||||||||    
T  8916903 cacttttggaggagtcaaaattgattctagaagcatacaattgattttgacataattggatgttattgagtagaattgatttt 8916821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 36448003 - 36447965
Alignment:
Q  193 tttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgattttg 36447965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 39648332 - 39648242
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattt 229  Q
    ||||| || ||||||| |||||| ||||| |||||| |||  || | ||||||||||||||||||||| || |||  |||| |||||||||    
T  39648332 gtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttggtttctctatagtaaaattgattt 39648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 41408258 - 41408336
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||| |||||| ||  ||||||||||| |||||||  |||||| |||||| |||||||  |||||||| |||||||||    
T  41408258 ttcaattcacttctaactaaaatcaattctacaaaattaattcaatcaaaatcaattttaatcaccgtataaccaaaca 41408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 4336344 - 4336389
Alignment:
Q  184 agaattgattttgacatgtttggattttctcgagtagaattgattt 229  Q
    ||||||||||||||||||||||| |  ||||||||| |||||||||    
T  4336344 agaattgattttgacatgtttggttggtctcgagtataattgattt 4336389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 18355798 - 18355753
Alignment:
Q  77 aatcaattttacaaaaccaattcattcaaaaccaatttttgtcacc 122  Q
    |||||||||||||||| ||||||| |||||| |||||||| |||||    
T  18355798 aatcaattttacaaaatcaattcactcaaaatcaatttttatcacc 18355753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 32994217 - 32994128
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacatac 138  Q
    ||||||| ||||||||||||| |   | ||||||||||||| || || ||||||||||| ||||| |  |||| | ||||||||||||||    
T  32994217 attttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaattgtcatcactgcagaaccaaacatac 32994128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 35495158 - 35495223
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgttt 204  Q
    ||||| |||||||||||||| |  ||||| |||||| | | ||| |||||||||||||||||||||    
T  35495158 gtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttgacatgttt 35495223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 35550283 - 35550347
Alignment:
Q  51 tttacattcaactcactttt-atataaaatcaattttacaaaaccaattcattcaaaaccaatttt 115  Q
    |||||| | ||||||||||| ||| |||||||||||||||||| ||||||| |||||| |||||||    
T  35550283 tttacactaaactcacttttgata-aaaatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 2778390 - 2778354
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattt 85  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2778390 attttacattcaactcacttttaagtaaaatcaattt 2778354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 5400182 - 5400118
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcac 121  Q
    |||||||||||||||   |||||||||||||||||| ||||  ||| ||||  ||||||||||||    
T  5400182 ttcaactcacttttagcaaaaatcaattttacaaaatcaatcaatttaaaatgaatttttgtcac 5400118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 5997422 - 5997378
Alignment:
Q  187 attgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    |||||||||||||||||||||| || | ||||| |||||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttg 5997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 10552956 - 10552892
Alignment:
Q  51 tttacattcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttt 115  Q
    |||||||||||||||||||||   ||||||||||||| |  | ||||| ||||||| ||||||||    
T  10552956 tttacattcaactcacttttaaccaaaatcaattttagagtatcaatttattcaaatccaatttt 10552892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 38335830 - 38335751
Alignment:
Q  57 ttcaactcacttttatataaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaacata 137  Q
    ||||||||||||||| || |||| |||||||||    ||||| | |||||| ||||| ||||||||| |||||||||||||    
T  38335830 ttcaactcactttta-atcaaattaattttacattgtcaattaactcaaaatcaattcttgtcaccgaagaaccaaacata 38335751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 41614742 - 41614834
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| ||||| || || ||||| ||||| |||||| ||| ||  | ||||||||||||| |||||||||  | || ||||||||||||||||    
T  41614742 gtttggttccatttgtgtaggagccaaaattgattctagaggtataaaattgattttgacttgtttggatggtttcaagtagaattgattttg 41614834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1191 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 55 - 116
Alignment:
Q  74 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||| || | |||||||||    
T  55 taaaatcaactttacaagaccaatccattcaaaatcaatttttgtcaacgcataaccaaaca 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 7825 - 7886
Alignment:
Q  74 taaaatcaattttacaaaaccaattcattcaaaaccaatttttgtcaccgtagaaccaaaca 135  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||| || | |||||||||    
T  7825 taaaatcaactttacaagaccaatccattcaaaatcaatttttgtcatcgcataaccaaaca 7886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 12495 - 12402
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtg-aagaattgattttgacatgtttggattttctcgagtagaattgattttg 231  Q
    ||||| || |||||||||||||| ||||| || ||| | | ||| || || | |||||||||||||||||| ||||| ||||||||||||||||    
T  12495 gtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 12402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 13324 - 13275
Alignment:
Q  49 attttacattcaactcacttttatataaaatcaattttacaaaaccaatt 98  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| |||||    
T  13324 attttacattcaactcaattttaaatataatcaattttacaaaatcaatt 13275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 14300 - 14242
Alignment:
Q  139 gtttgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttga 197  Q
    ||||| ||||||||||||| ||| ||||| ||| || ||||||| ||||||||||||||    
T  14300 gtttggttccacttttggaagagccaaaattgaatctagatgtgtagaattgattttga 14242  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 31748 - 31813
Alignment:
Q  163 caaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgatt 228  Q
    ||||| |||||| ||| ||| |||||||||| |||||||||||| | || ||||||| ||||||||    
T  31748 caaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgatt 31813  T

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