View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_121 (Length: 248)

Name: NF0816_low_121
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_121
NF0816_low_121
[»] chr5 (1 HSPs)
chr5 (25-248)||(9237127-9237350)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 9237127 - 9237350
Alignment:
Q  25 atcaactttatttttgaattatctccacttagtttgtgtttaactttcattcattttcatagcatcacttttgctaaaaataatgacattcatgcctttc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  9237127 atcaactttatttttgaattatctccacttagtttgtgtttaactttcatttattttcatagcatcacttttgctaaaaataatgacattcatgccttta 9237226  T
Q  125 gacaatttttgttttcaaatgtttacaaaatcggctcgtttgacaaatgggaacgcaactatcaagttggtaaaaccatgtagaaaatcgtggtatatca 224  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9237227 gacaatttttgttttcaaacgtttacaaaatcggctcgtttgacaaatgggaacgcaactatcaagttggtaaaaccatgtagaaaatcgtggtatatca 9237326  T
Q  225 caaactcagactatacgactagtc 248  Q
    ||||||||||||||||||||||||    
T  9237327 caaactcagactatacgactagtc 9237350  T

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