View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_125 (Length: 245)
Name: NF0816_low_125
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_125 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11532125 - 11532271
Alignment:
| Q |
1 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacctgtattaaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11532125 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacctgtattaaattaa |
11532224 |
T |
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| Q |
101 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
147 |
Q |
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| T |
11532225 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
11532271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11557616 - 11557762
Alignment:
| Q |
1 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacctgtattaaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557616 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacctgtattaaattaa |
11557715 |
T |
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| Q |
101 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
147 |
Q |
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| T |
11557716 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
11557762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11564439 - 11564585
Alignment:
| Q |
1 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacctgtattaaattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
11564439 |
gcaaatcaaggcgaacgagtatacatgatatcatccatgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatatatacccgtactaaattaa |
11564538 |
T |
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| Q |
101 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
147 |
Q |
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| T |
11564539 |
ttttttcacaagttgtctgagattcactttttgttcgctattaatta |
11564585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11532079 - 11532136
Alignment:
| Q |
1 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggc |
58 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11532079 |
gcaaatcaaggagaacgagtatacatgatatcatccacgacatattgcaaatcaaggc |
11532136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11557570 - 11557627
Alignment:
| Q |
1 |
gcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggc |
58 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11557570 |
gcaaatcaaggtgaacgagtatacatgatatcatccacgacatattgcaaatcaaggc |
11557627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 11564404 - 11564450
Alignment:
| Q |
12 |
cgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggc |
58 |
Q |
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| T |
11564404 |
cgaacgagtatacatgatatcatccacgacatgtcgcaaatcaaggc |
11564450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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