View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_126 (Length: 243)

Name: NF0816_low_126
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_126
NF0816_low_126
[»] chr7 (16 HSPs)
chr7 (1-134)||(48893891-48894024)
chr7 (141-213)||(40257771-40257843)
chr7 (139-213)||(17145627-17145701)
chr7 (139-213)||(37864276-37864350)
chr7 (139-208)||(37468979-37469048)
chr7 (139-208)||(38779537-38779606)
chr7 (139-207)||(668184-668252)
chr7 (137-185)||(27599214-27599262)
chr7 (137-185)||(27600092-27600140)
chr7 (139-207)||(38072266-38072334)
chr7 (139-234)||(7677422-7677517)
chr7 (139-213)||(7677778-7677852)
chr7 (139-208)||(38778859-38778928)
chr7 (139-192)||(41194518-41194571)
chr7 (150-234)||(4261544-4261628)
chr7 (141-181)||(36844619-36844659)
[»] chr4 (26 HSPs)
chr4 (137-243)||(25970742-25970848)
chr4 (140-243)||(36450734-36450837)
chr4 (141-234)||(25970113-25970205)
chr4 (139-208)||(38694928-38694997)
chr4 (137-185)||(30808624-30808672)
chr4 (139-213)||(11417692-11417766)
chr4 (139-213)||(11417906-11417980)
chr4 (139-213)||(26610350-26610424)
chr4 (139-213)||(26611252-26611326)
chr4 (139-213)||(29651301-29651375)
chr4 (139-213)||(38143706-38143780)
chr4 (139-213)||(45235929-45236003)
chr4 (148-213)||(36864831-36864896)
chr4 (139-243)||(10424128-10424232)
chr4 (159-243)||(21165472-21165556)
chr4 (137-185)||(30809502-30809550)
chr4 (151-243)||(31836399-31836491)
chr4 (137-185)||(45331450-45331498)
chr4 (139-234)||(39523219-39523314)
chr4 (172-234)||(11806129-11806191)
chr4 (140-186)||(33369915-33369961)
chr4 (139-213)||(36865686-36865760)
chr4 (151-187)||(23383327-23383363)
chr4 (131-183)||(39652058-39652110)
chr4 (147-183)||(41261889-41261925)
chr4 (139-187)||(50056954-50057002)
[»] chr1 (16 HSPs)
chr1 (137-241)||(47334841-47334945)
chr1 (158-243)||(47334223-47334307)
chr1 (158-234)||(31390771-31390847)
chr1 (139-213)||(193855-193929)
chr1 (139-207)||(51974442-51974510)
chr1 (138-213)||(6076836-6076911)
chr1 (139-213)||(16270212-16270286)
chr1 (139-208)||(23440839-23440908)
chr1 (139-243)||(43737734-43737838)
chr1 (150-213)||(9948856-9948919)
chr1 (151-234)||(50827039-50827121)
chr1 (139-213)||(43737947-43738021)
chr1 (139-213)||(48972414-48972488)
chr1 (147-208)||(6075987-6076048)
chr1 (141-182)||(30780984-30781025)
chr1 (137-185)||(11031434-11031482)
[»] chr6 (11 HSPs)
chr6 (139-213)||(15083287-15083361)
chr6 (139-243)||(33479701-33479805)
chr6 (148-243)||(33018355-33018450)
chr6 (139-213)||(3543032-3543106)
chr6 (139-213)||(22582448-22582522)
chr6 (139-213)||(22587279-22587353)
chr6 (139-213)||(33480597-33480671)
chr6 (139-234)||(7193343-7193438)
chr6 (139-234)||(33018172-33018267)
chr6 (139-213)||(3542819-3542893)
chr6 (139-213)||(15082402-15082476)
[»] chr2 (10 HSPs)
chr2 (139-243)||(14573266-14573369)
chr2 (139-213)||(4479671-4479745)
chr2 (139-207)||(21471022-21471090)
chr2 (139-213)||(14573968-14574042)
chr2 (129-183)||(20991282-20991336)
chr2 (139-213)||(21471923-21471997)
chr2 (139-213)||(37548003-37548077)
chr2 (141-181)||(23876064-23876104)
chr2 (137-185)||(37546561-37546609)
chr2 (139-243)||(38834392-38834496)
[»] chr5 (12 HSPs)
chr5 (132-183)||(4607135-4607186)
chr5 (139-234)||(12190106-12190201)
chr5 (139-213)||(8204125-8204199)
chr5 (139-213)||(15183986-15184060)
chr5 (139-213)||(33002785-33002859)
chr5 (137-183)||(1970513-1970559)
chr5 (139-208)||(686422-686490)
chr5 (139-243)||(15183093-15183198)
chr5 (139-208)||(33001937-33002006)
chr5 (139-192)||(36626620-36626673)
chr5 (147-183)||(12201390-12201426)
chr5 (147-183)||(17766576-17766612)
[»] scaffold0311 (1 HSPs)
scaffold0311 (139-213)||(129-203)
[»] chr8 (7 HSPs)
chr8 (139-213)||(34992233-34992307)
chr8 (150-206)||(32536724-32536780)
chr8 (141-184)||(27321606-27321649)
chr8 (137-183)||(42345397-42345443)
chr8 (137-182)||(39255752-39255797)
chr8 (139-207)||(41859315-41859383)
chr8 (159-187)||(43925013-43925041)
[»] chr3 (8 HSPs)
chr3 (139-243)||(36750376-36750480)
chr3 (139-243)||(38923604-38923708)
chr3 (139-234)||(19132760-19132855)
chr3 (139-234)||(41755504-41755599)
chr3 (139-213)||(32490164-32490238)
chr3 (137-183)||(43768029-43768075)
chr3 (139-213)||(45242071-45242145)
chr3 (141-182)||(39901853-39901894)
[»] scaffold0041 (1 HSPs)
scaffold0041 (139-234)||(27226-27321)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 48893891 - 48894024
Alignment:
Q  1 caaaattctcttattaaattactagtttttt-gtttgagtagtggaatcatgatgtatattggtnnnnnnntctcacatcattttattttgatgatatct 99  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||    
T  48893891 caaaattctcttattaaattactagtttttttgttttagtagtggaatcatgatggatattggtgggggg-tctcacatcattttattttgatgatatct 48893989  T
Q  100 taccagttttgattcattattatataaaacacaag 134  Q
    | |||||||||||||||||||||||||||||||||    
T  48893990 tgccagttttgattcattattatataaaacacaag 48894024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 40257843 - 40257771
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||| ||||||||||| ||||||||||||||||||||||||||  || |||| ||| ||| ||||||| ||||    
T  40257843 tttagcatgggaaatgggagttgtttcccaccatgagaaagttgtttttgtccattagatcaaatgagaaaca 40257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 17145627 - 17145701
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  17145627 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 17145701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 37864350 - 37864276
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  |||||||| |||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  37864350 catttaatttgggaaataagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgagaaaca 37864276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 37469048 - 37468979
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| |||||||||||    
T  37469048 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgag 37468979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 38779606 - 38779537
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| |||||||||||    
T  38779606 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgag 38779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 668184 - 668252
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatga 207  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||    
T  668184 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatga 668252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 27599214 - 27599262
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  27599214 ggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaa 27599262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 27600140 - 27600092
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  27600140 ggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaa 27600092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 38072334 - 38072266
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatga 207  Q
    |||||||  ||||||||||||||| ||| |||||||| ||||||| || ||||| ||| ||||||||||    
T  38072334 catttaatttgggaaatgagagttcttttccaccatgggaaagttgatcatgtccattagattaaatga 38072266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 7677422 - 7677517
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| |||| || ||||||||||||| |||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctca 7677517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 7677852 - 7677778
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||  ||| ||||||||||| ||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaaca 7677778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 38778859 - 38778928
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || || || ||| |||||||||||    
T  38778859 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgag 38778928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 41194518 - 41194571
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtc 192  Q
    |||||||  ||||||| ||||||| |||||||||||| |||||||||| |||||    
T  41194518 catttaatttgggaaaggagagttctttcccaccatgggaaagttaatcatgtc 41194571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 4261628 - 4261544
Alignment:
Q  150 ggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    ||||| ||||||| |||||||||||| ||||||| || || || ||| ||||||||||| |||| || | ||||  |||||||||    
T  4261628 ggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatatttctatcatactctctca 4261544  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 36844619 - 36844659
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaag 181  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  36844619 tttagcatgggaaaggtgagttgtttcccaccatgagaaag 36844659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 25970848 - 25970742
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcata 236  Q
    ||||||||  |||||||| | |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  25970848 ggcatttagtatgggaaaagggagttgtttcccaccatgagaaagttgattatgtccattgaattaaatgagtaacaaatctttatcctactctctcata 25970749  T
Q  237 cactaga 243  Q
    |||||||    
T  25970748 cactaga 25970742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 36450734 - 36450837
Alignment:
Q  140 atttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatacac 239  Q
    ||||| ||||||||| | ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  36450734 atttagcatgggaaaggggagttgttttccaccatgggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcatacac 36450833  T
Q  240 taga 243  Q
    ||||    
T  36450834 taga 36450837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 25970113 - 25970205
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||| ||||||||| | |||||||||||||||||| ||||||| || ||||| ||| ||||||||||| ||||||||||||||  |||||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaagttgat-atgtccattagattaaatgagaaacaaatctttatcatactctctca 25970205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 38694997 - 38694928
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||| || ||||||||| |||||||||||    
T  38694997 catttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatgtctattagattaaatgag 38694928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 30808624 - 30808672
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  30808624 ggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagttaa 30808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 11417692 - 11417766
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  11417692 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 11417766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 11417980 - 11417906
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  11417980 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 11417906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 26610350 - 26610424
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||||||||||| |||||||||||| |||| || || ||||| ||| ||||||||||| ||||    
T  26610350 catttaatttgggaaatgagagttctttcccaccatgggaaaattgatcatgtccattagattaaatgaggaaca 26610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 26611326 - 26611252
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  26611326 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 26611252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 29651375 - 29651301
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || || |||||| ||||||||||| ||||    
T  29651375 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatctattagattaaatgaggaaca 29651301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 38143780 - 38143706
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||||||||||| |||||||||||| |||||||  | ||||| ||| ||||||||||| ||||    
T  38143780 catttaatttgggaaatgagagttctttcccaccatgggaaagttggtcatgtccattagattaaatgaggaaca 38143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 45236003 - 45235929
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||| ||| ||||||| |||||||||||| |||||||||| ||||| ||| ||||||||||| ||||    
T  45236003 catttaatttggaaaaggagagttctttcccaccatgggaaagttaatcatgtccattagattaaatgaggaaca 45235929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 36864831 - 36864896
Alignment:
Q  148 tgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    ||||||| ||||||| |||| ||||||||||||||| || ||||| ||| ||||||||||| ||||    
T  36864831 tgggaaaggagagttctttctcaccatgagaaagttgatcatgtccattagattaaatgagaaaca 36864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 10424128 - 10424232
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||| ||||||| |||||||||||  ||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  ||    
T  10424128 catttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaacca 10424227  T
Q  239 ctaga 243  Q
    |||||    
T  10424228 ctaga 10424232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 21165472 - 21165556
Alignment:
Q  159 agttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatacactaga 243  Q
    |||| |||||||||||||||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  |||||||    
T  21165472 agttctttcccaccatgagaaagttgatcatgtccatttgattaaatgaggaacatatttctatcatactctctcaaccactaga 21165556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 30809550 - 30809502
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||||||    
T  30809550 ggcatttaaaatgggaaaggggagttgttttccaccatgagaaagttaa 30809502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 31836491 - 31836399
Alignment:
Q  151 gaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatacactaga 243  Q
    |||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  |||||||    
T  31836491 gaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactaga 31836399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 45331498 - 45331450
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| ||| |||| | ||||||||||||||||||||||||||||    
T  45331498 ggcatttaaaatgagaaaggggagttgtttcccaccatgagaaagttaa 45331450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 39523314 - 39523219
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| ||| |||||||| ||||||| || ||||| ||| ||||||||||| || | ||||||| |  |||||||||    
T  39523314 catttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctca 39523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 11806129 - 11806191
Alignment:
Q  172 catgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||| |||||||||| ||||| ||| ||||||||||| |||| || ||||||| |||||||||    
T  11806129 catgggaaagttaatcatgtccattagattaaatgaggaacacatttttatcctactctctca 11806191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 33369915 - 33369961
Alignment:
Q  140 atttaacatgggaaatgagagttgtttcccaccatgagaaagttaat 186  Q
    ||||| |||||||||||| | ||||||||||||||| ||||||||||    
T  33369915 atttagcatgggaaatgatatttgtttcccaccatgggaaagttaat 33369961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 36865760 - 36865686
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || || || ||| ||||||||||| ||||    
T  36865760 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggaaca 36865686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 23383327 - 23383363
Alignment:
Q  151 gaaatgagagttgtttcccaccatgagaaagttaatt 187  Q
    |||| |||||||||||||||||||| |||||||||||    
T  23383327 gaaaggagagttgtttcccaccatgggaaagttaatt 23383363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 39652110 - 39652058
Alignment:
Q  131 caaggcggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    ||||| |||||||| ||||||||  |||||||||||| ||||||| |||||||    
T  39652110 caaggtggcatttagcatgggaatggagagttgtttctcaccatgggaaagtt 39652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 41261925 - 41261889
Alignment:
Q  147 atgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||||||||||||||||| |||||| |||||||    
T  41261925 atgggaaatgagagttgtttcctaccatgggaaagtt 41261889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 50057002 - 50056954
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaatt 187  Q
    ||||||||||||||||||| | |  ||||||| ||||||||||||||||    
T  50057002 catttaacatgggaaatgataatattttcccatcatgagaaagttaatt 50056954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 47334945 - 47334841
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcata 236  Q
    ||||||||  |||||||| | |||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  47334945 ggcatttagtatgggaaaagggagttgtttcccaccataggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcata 47334846  T
Q  237 cacta 241  Q
    |||||    
T  47334845 cacta 47334841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 47334223 - 47334307
Alignment:
Q  158 gagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatacactaga 243  Q
    |||||||||||||| ||| ||||||| |||||||| ||| ||||||||||| |||||||| |||||| ||||||||| ||||||||    
T  47334223 gagttgtttcccacaatgggaaagttgattatgtccattagattaaatgagaaacaaatccttatcctactctctca-acactaga 47334307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 31390847 - 31390771
Alignment:
Q  158 gagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    ||||| |||||||||||| ||||||| |||||||| |||||| |||||||| |||| || ||||||| |||||||||    
T  31390847 gagttctttcccaccatgggaaagttgattatgtccattggaataaatgaggaacacatttttatcctactctctca 31390771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 193855 - 193929
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||||||||||||||||||| ||||| |||  |||||||||| ||||    
T  193855 catttaatttgggaaaggagagttctttcccaccatgagaaagttaatcatgtccattaaattaaatgaggaaca 193929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 51974442 - 51974510
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatga 207  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||||||| ||||||||||    
T  51974442 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtctattagattaaatga 51974510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 6076911 - 6076836
Alignment:
Q  138 gcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    ||||||| ||||||||||||||||| |||||||| |||  |||||| || ||||| |||  |||||||||||||||    
T  6076911 gcatttagcatgggaaatgagagttctttcccactatggaaaagttgatcatgtccattatattaaatgagtaaca 6076836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 16270212 - 16270286
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  16270212 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 16270286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 23440908 - 23440839
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| |||||||||||    
T  23440908 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgag 23440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 43737734 - 43737838
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  |||||||  |||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| || | || ||||||  |||||||||  ||    
T  43737734 catttaatttgggaaagtagagttatttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctcaacca 43737833  T
Q  239 ctaga 243  Q
    |||||    
T  43737834 ctaga 43737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 9948919 - 9948856
Alignment:
Q  150 ggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    ||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  9948919 ggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 9948856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 50827121 - 50827039
Alignment:
Q  151 gaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| || ||||||  |||||||||    
T  50827121 gaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctca 50827039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 43738021 - 43737947
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||| |||| ||||||| || ||||| ||| ||||||||||| ||||    
T  43738021 catttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaaca 43737947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 48972488 - 48972414
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||||||||  |||||| || ||||| ||| ||||||||||| ||||    
T  48972488 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgagaaaca 48972414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 6075987 - 6076048
Alignment:
Q  147 atgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||| ||||||| ||| | |||||||||||||| || ||||| ||| |||||||||||    
T  6075987 atgggaaaggagagttcttttctaccatgagaaagttgatcatgtccattagattaaatgag 6076048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 30781025 - 30780984
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaagt 182  Q
    |||||||||||||| ||||||||||||||| |||| ||||||    
T  30781025 tttaacatgggaaaggagagttgtttcccatcatgggaaagt 30780984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 11031434 - 11031482
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    |||||||||||||||||| | || | ||||||||||||| |||||||||    
T  11031434 ggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaa 11031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15083361 - 15083287
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||| || || |||||| ||||||||||| ||||    
T  15083361 catttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatatctattagattaaatgaggaaca 15083287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 33479701 - 33479805
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  ||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaacca 33479800  T
Q  239 ctaga 243  Q
    |||||    
T  33479801 ctaga 33479805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 33018450 - 33018355
Alignment:
Q  148 tgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatacactaga 243  Q
    ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  |||||||    
T  33018450 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactaga 33018355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 3543106 - 3543032
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  3543106 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 3543032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 22582522 - 22582448
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 22582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 22587353 - 22587279
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 22587279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 33480671 - 33480597
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  33480671 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 33480597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 7193343 - 7193438
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || || || ||| ||||||||||| |||| ||  |||||  |||||||||    
T  7193343 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatattcttatcatactctctca 7193438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 33018172 - 33018267
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| ||||||| |||  ||||||| || ||||| ||| ||||||||||| |||| || ||||||  |||||||||    
T  33018172 catttaatttgggaaaggagagttctttcccatcattggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctca 33018267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 3542819 - 3542893
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||  ||| ||||||||||| ||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgttcattagattaaatgaggaaca 3542893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 15082402 - 15082476
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||||||||||| ||| ||| |||| ||||||| || ||||| ||| ||||||||||| ||||    
T  15082402 catttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccattagattaaatgaggaaca 15082476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 14573266 - 14573369
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| || | || ||||||  ||||||||| |||    
T  14573266 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctca-aca 14573364  T
Q  239 ctaga 243  Q
    |||||    
T  14573365 ctaga 14573369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 4479745 - 4479671
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||| ||||||| |||||||||| ||||| ||| ||||||||||| ||||    
T  4479745 catttaatttgggaaaggagagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaaca 4479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 21471022 - 21471090
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatga 207  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||    
T  21471022 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatga 21471090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 14574042 - 14573968
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||||||| |||||||| || || || ||| ||||||||||| ||||    
T  14574042 catttaatttgggaaaggagagttctttcccaccataagaaagttgatcatatccattagattaaatgagaaaca 14573968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 20991282 - 20991336
Alignment:
Q  129 cacaaggcggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    ||||||| |||||||| ||||||||  ||||||||||| |||||||| |||||||    
T  20991282 cacaaggtggcatttagcatgggaatggagagttgttttccaccatgggaaagtt 20991336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 21471997 - 21471923
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || || || ||| ||||||||||| ||||    
T  21471997 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccattagattaaatgaggaaca 21471923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 37548003 - 37548077
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||| |||| ||||||| || ||||| ||| ||||||||||| ||||    
T  37548003 catttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaaca 37548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 23876104 - 23876064
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaag 181  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  23876104 tttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 37546609 - 37546561
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagttaa 185  Q
    ||||||||| |||||||| | ||||||||||||| |||| |||||||||    
T  37546609 ggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagttaa 37546561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 38834392 - 38834496
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||| ||| ||  |||||||||| | ||||||| || ||||| ||| ||||||||||| |||| || ||||||  |||||||||  ||    
T  38834392 catttaatttgggaaaggagggtactttcccaccacgggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaacca 38834491  T
Q  239 ctaga 243  Q
    |||||    
T  38834492 ctaga 38834496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 4607186 - 4607135
Alignment:
Q  132 aaggcggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||||||||||    
T  4607186 aaggtggcatttagcatgggaatggagagttgtttcccaccatgagaaagtt 4607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 12190201 - 12190106
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||    
T  12190201 catttaatttgggaaaagagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctca 12190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 8204125 - 8204199
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  8204125 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 8204199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15184060 - 15183986
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  15184060 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 15183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 33002859 - 33002785
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  33002859 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 33002785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 1970559 - 1970513
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||| ||||||||  |||||||||||||||||||| |||||||    
T  1970559 ggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 1970513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 686422 - 686490
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| |||||||||||    
T  686422 catttaatttgggaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgag 686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 15183093 - 15183198
Alignment:
Q  139 catttaacatgggaaatgagagttg-tttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcatac 237  Q
    |||||||  ||||||| |||||||  ||||||| |||||||||||| || ||||| ||| ||||||||||| |||| || | ||||  |||||||||  |    
T  15183093 catttaatttgggaaaggagagtttatttcccatcatgagaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaacc 15183192  T
Q  238 actaga 243  Q
    ||||||    
T  15183193 actaga 15183198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33001937 - 33002006
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgag 208  Q
    |||||||  ||||||| ||||||| ||||||||||||  |||||| || ||||| ||| |||||||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgag 33002006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 36626673 - 36626620
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtc 192  Q
    |||||||  ||||||||||||||| |||||||||||| ||||||| || |||||    
T  36626673 catttaatttgggaaatgagagttctttcccaccatgggaaagttgatcatgtc 36626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 12201390 - 12201426
Alignment:
Q  147 atgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  12201390 atgggaaaggagagttgtttcctaccatgagaaagtt 12201426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 17766576 - 17766612
Alignment:
Q  147 atgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||| || |||||||||||||||||||||||||    
T  17766576 atgggaaaggatagttgtttcccaccatgagaaagtt 17766612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 203 - 129
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| |||||||  ||| ||||||||||| ||||    
T  203 catttaatttgggaaaggagagttctttcccaccatgggaaagttgattatgttcattagattaaatgaggaaca 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 34992307 - 34992233
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||| ||||    
T  34992307 catttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaaca 34992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 32536724 - 32536780
Alignment:
Q  150 ggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatg 206  Q
    ||||||||||||| |||||||||||| ||||||| || ||||| ||| |||||||||    
T  32536724 ggaaatgagagttctttcccaccatgggaaagttgatcatgtccattagattaaatg 32536780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 27321606 - 27321649
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaagtta 184  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  27321606 tttagcatgggaaataagagttgtttcccaccatgaaaaagtta 27321649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 42345397 - 42345443
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||| ||||||||  |||||||||||||||||||| |||||||    
T  42345397 ggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 42345443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 39255797 - 39255752
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagt 182  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||    
T  39255797 ggcatttaacttgggaaatgagacttctttcccaccatgggaaagt 39255752  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 41859315 - 41859383
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatga 207  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || |||||  || ||||||||||    
T  41859315 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccgttagattaaatga 41859383  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 43925041 - 43925013
Alignment:
Q  159 agttgtttcccaccatgagaaagttaatt 187  Q
    |||||||||||||||||||||||||||||    
T  43925041 agttgtttcccaccatgagaaagttaatt 43925013  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 36750480 - 36750376
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||||| || ||||  ||| ||||||||||| |||| || | ||||  |||||||||  ||    
T  36750480 catttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctctcaacca 36750381  T
Q  239 ctaga 243  Q
    |||||    
T  36750380 ctaga 36750376  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 38923708 - 38923604
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctcataca 238  Q
    |||||||  ||||||||||||||| ||||||||||||  |||||| || ||||  ||| ||||||||||| |||| || | ||||  |||||||||  ||    
T  38923708 catttaatttgggaaatgagagttctttcccaccatggaaaagttgataatgttcattagattaaatgaggaacatatttctatcatactctctcaacca 38923609  T
Q  239 ctaga 243  Q
    |||||    
T  38923608 ctaga 38923604  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 19132855 - 19132760
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| || |||| |||||||||||| ||||||| || ||||| ||| ||||||||||| |||| ||  |||||  |||||||||    
T  19132855 catttaatttgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcatactctctca 19132760  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 41755504 - 41755599
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| ||||||||||||||||| || || ||||  ||| ||||||||||| |||| || | ||||  |||||||||    
T  41755504 catttaatttgggaaaggagagttttttcccaccatgagaaaattgatcatgttcattagattaaatgaggaacatatttctatcatactctctca 41755599  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 32490238 - 32490164
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||| ||||||| ||||||||||||  |||||| || ||||| ||| ||||||||||| ||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaaca 32490164  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 43768029 - 43768075
Alignment:
Q  137 ggcatttaacatgggaaatgagagttgtttcccaccatgagaaagtt 183  Q
    |||||||| ||||||||  |||||||||||||||||||| |||||||    
T  43768029 ggcatttagcatgggaatggagagttgtttcccaccatgggaaagtt 43768075  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 45242071 - 45242145
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaaca 213  Q
    |||||||  ||||||||||||||| ||| ||| |||| ||||||| || ||||| ||| ||||||||||| ||||    
T  45242071 catttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccattagattaaatgaggaaca 45242145  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 39901853 - 39901894
Alignment:
Q  141 tttaacatgggaaatgagagttgtttcccaccatgagaaagt 182  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  39901853 tttaacctgggaaatgagagttctttcccaccatgggaaagt 39901894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 27226 - 27321
Alignment:
Q  139 catttaacatgggaaatgagagttgtttcccaccatgagaaagttaattatgtctattggattaaatgagtaacaaatctttatcccactctctca 234  Q
    |||||||  ||||||| ||||||| ||||||| |||| ||||||| || ||||| ||| ||||||||||| |||| ||  |||||  |||||||||    
T  27226 catttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctca 27321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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