View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_134 (Length: 217)
Name: NF0816_low_134
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_134 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7286839 - 7287045
Alignment:
| Q |
1 |
ttccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttcacatggtgtcatg |
100 |
Q |
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| T |
7286839 |
ttccaatgtgtaataatgttacacattagggattataattgtggtttactctttgttaattttttgtgaaatattatttttaacttcacatggtgtcctg |
7286938 |
T |
|
| Q |
101 |
atagcttcttggttttggttaaactctagcctagttaaattgtttgttccattgaactggttgccaacaaaagggcttccttggattgttcttttgtaag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7286939 |
atagcttcttggttttggttaaactccagcctagttaaatagtttgttcaattgaagtggttgccaacaaaagggcttccttgggttgttcttttgtaag |
7287038 |
T |
|
| Q |
201 |
ttctctg |
207 |
Q |
| |
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||||||| |
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| T |
7287039 |
ttctctg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8357360 - 8357227
Alignment:
| Q |
1 |
ttccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttcacatggtgtcatg |
100 |
Q |
| |
|
|||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||||||| |||| || | ||||||||||||| | |||||| | |
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| T |
8357360 |
ttccaatgtgaaatcaagttacactttagggactataattgtggtttgctctttgttaa-ttttcatg--acattatttttaactccctctggtgtactc |
8357264 |
T |
|
| Q |
101 |
atagcttcttggttttggttaaactctagcctagttaa |
138 |
Q |
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|||||||||||| |||||||||||| |||||||||||| |
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| T |
8357263 |
atagcttcttggatttggttaaact-tagcctagttaa |
8357227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8365786 - 8365653
Alignment:
| Q |
1 |
ttccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattatttttaacttcacatggtgtcatg |
100 |
Q |
| |
|
|||||||||| ||| | ||||||| || |||| |||||| |||||||||||||| |||||||| | | ||||||||||||| ||| |||||| | |
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| T |
8365786 |
ttccaatgtgaaatcaagttacactttcgggactataatcgtggtttgctctttcttaatttt---tacgacattatttttaactccacctggtgtactc |
8365690 |
T |
|
| Q |
101 |
atagcttcttggttttggttaaactctagcctagttaa |
138 |
Q |
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||||||||||| |||||||||||| ||||||||||| |
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| T |
8365689 |
gtagcttcttggaattggttaaactc-agcctagttaa |
8365653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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