View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_15 (Length: 563)

Name: NF0816_low_15
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_15
NF0816_low_15
[»] chr8 (38 HSPs)
chr8 (44-556)||(35764633-35765145)
chr8 (134-201)||(2111013-2111080)
chr8 (124-219)||(925970-926065)
chr8 (133-188)||(8407584-8407639)
chr8 (125-200)||(43408663-43408738)
chr8 (134-212)||(28947309-28947387)
chr8 (137-204)||(5111508-5111575)
chr8 (134-205)||(36049541-36049612)
chr8 (144-211)||(37740756-37740823)
chr8 (134-228)||(6078444-6078538)
chr8 (163-237)||(12524570-12524644)
chr8 (142-211)||(29861489-29861558)
chr8 (151-212)||(33583892-33583953)
chr8 (134-205)||(6082399-6082470)
chr8 (149-211)||(12524305-12524367)
chr8 (134-196)||(13544014-13544076)
chr8 (134-196)||(13680397-13680459)
chr8 (145-195)||(17696151-17696201)
chr8 (142-211)||(3346102-3346171)
chr8 (142-199)||(27500572-27500629)
chr8 (136-200)||(38529642-38529706)
chr8 (142-186)||(39746244-39746288)
chr8 (142-205)||(10831616-10831679)
chr8 (133-212)||(25019488-25019567)
chr8 (133-200)||(32202764-32202831)
chr8 (134-188)||(2641828-2641882)
chr8 (134-188)||(9211662-9211716)
chr8 (131-201)||(10861086-10861156)
chr8 (134-199)||(4781257-4781322)
chr8 (65-98)||(6376697-6376730)
chr8 (152-205)||(10113046-10113099)
chr8 (127-180)||(14896445-14896498)
chr8 (134-187)||(25099576-25099629)
chr8 (131-223)||(5964679-5964771)
chr8 (163-227)||(21367065-21367128)
chr8 (142-205)||(30485060-30485123)
chr8 (150-186)||(39746056-39746092)
chr8 (133-205)||(41808251-41808322)
[»] chr3 (48 HSPs)
chr3 (124-243)||(32325969-32326092)
chr3 (124-205)||(9198045-9198126)
chr3 (124-310)||(32109880-32110066)
chr3 (133-237)||(32582592-32582695)
chr3 (142-231)||(9780466-9780555)
chr3 (141-217)||(11042062-11042137)
chr3 (128-199)||(20873068-20873139)
chr3 (143-201)||(3729869-3729927)
chr3 (124-218)||(33674384-33674478)
chr3 (149-206)||(50882420-50882477)
chr3 (124-239)||(33282275-33282390)
chr3 (133-220)||(38053581-38053668)
chr3 (124-201)||(1742799-1742876)
chr3 (143-212)||(32117967-32118036)
chr3 (135-212)||(37083990-37084066)
chr3 (145-202)||(42603846-42603903)
chr3 (143-211)||(35682648-35682716)
chr3 (124-243)||(18084839-18084957)
chr3 (44-98)||(32326130-32326182)
chr3 (145-199)||(22838270-22838324)
chr3 (170-216)||(34778392-34778438)
chr3 (142-196)||(38147969-38148023)
chr3 (134-188)||(42218283-42218337)
chr3 (162-223)||(35696637-35696698)
chr3 (124-212)||(13799879-13799967)
chr3 (133-199)||(36618085-36618148)
chr3 (170-262)||(43822708-43822800)
chr3 (44-106)||(1720154-1720214)
chr3 (143-198)||(22827816-22827871)
chr3 (170-201)||(45021353-45021384)
chr3 (133-192)||(47108978-47109037)
chr3 (134-188)||(20451113-20451167)
chr3 (142-212)||(37334638-37334708)
chr3 (134-188)||(39720083-39720137)
chr3 (159-201)||(44560337-44560379)
chr3 (134-188)||(46972717-46972771)
chr3 (134-188)||(52165505-52165559)
chr3 (134-188)||(52867581-52867635)
chr3 (124-197)||(30956-31029)
chr3 (135-188)||(21707782-21707835)
chr3 (149-198)||(22815516-22815565)
chr3 (144-189)||(31126048-31126093)
chr3 (44-103)||(10366529-10366586)
chr3 (134-178)||(28956245-28956289)
chr3 (146-198)||(32645881-32645933)
chr3 (136-204)||(42933640-42933708)
chr3 (133-197)||(54399569-54399633)
chr3 (143-199)||(54481491-54481547)
[»] scaffold0010 (1 HSPs)
scaffold0010 (124-211)||(166727-166814)
[»] chr1 (43 HSPs)
chr1 (124-199)||(30173402-30173477)
chr1 (133-201)||(3949639-3949707)
chr1 (137-213)||(32348407-32348483)
chr1 (125-218)||(3160978-3161071)
chr1 (133-201)||(1714040-1714108)
chr1 (133-201)||(35058682-35058750)
chr1 (137-237)||(21516474-21516574)
chr1 (125-196)||(23908829-23908900)
chr1 (132-313)||(31117488-31117669)
chr1 (144-265)||(31795289-31795410)
chr1 (147-215)||(5923865-5923933)
chr1 (127-199)||(11337241-11337313)
chr1 (127-199)||(11495260-11495332)
chr1 (133-212)||(28870462-28870541)
chr1 (167-237)||(42747725-42747795)
chr1 (121-205)||(15601976-15602059)
chr1 (145-201)||(32602949-32603005)
chr1 (133-212)||(7460250-7460328)
chr1 (133-218)||(28870864-28870946)
chr1 (142-206)||(35926514-35926580)
chr1 (124-237)||(1415873-1415987)
chr1 (163-237)||(35272453-35272527)
chr1 (144-237)||(20791781-20791874)
chr1 (151-212)||(32359334-32359395)
chr1 (133-218)||(38321958-38322043)
chr1 (161-201)||(11611638-11611678)
chr1 (124-196)||(22593514-22593586)
chr1 (124-243)||(15801277-15801394)
chr1 (132-199)||(40942416-40942483)
chr1 (133-190)||(2859176-2859234)
chr1 (160-206)||(34619167-34619213)
chr1 (133-199)||(40856611-40856677)
chr1 (72-113)||(33644681-33644722)
chr1 (142-242)||(4372761-4372861)
chr1 (134-198)||(36021204-36021267)
chr1 (135-186)||(46087354-46087405)
chr1 (134-188)||(34087664-34087718)
chr1 (134-188)||(49219899-49219953)
chr1 (144-189)||(30418497-30418542)
chr1 (135-188)||(40888500-40888553)
chr1 (134-187)||(42964534-42964587)
chr1 (142-199)||(43024573-43024630)
chr1 (160-200)||(48817377-48817417)
[»] chr5 (39 HSPs)
chr5 (124-241)||(2942057-2942174)
chr5 (135-201)||(28363539-28363605)
chr5 (133-212)||(17902785-17902864)
chr5 (124-201)||(17259595-17259672)
chr5 (124-201)||(41892771-41892848)
chr5 (133-206)||(43315537-43315610)
chr5 (141-200)||(32046915-32046974)
chr5 (133-211)||(31677291-31677369)
chr5 (44-103)||(16869924-16869981)
chr5 (124-200)||(31806595-31806671)
chr5 (133-237)||(34640176-34640280)
chr5 (133-181)||(1621438-1621486)
chr5 (133-212)||(1786868-1786947)
chr5 (142-212)||(6462239-6462308)
chr5 (161-211)||(31812155-31812205)
chr5 (135-188)||(15444122-15444175)
chr5 (151-212)||(17903107-17903168)
chr5 (131-212)||(25832361-25832442)
chr5 (159-199)||(5390454-5390494)
chr5 (134-186)||(9397173-9397225)
chr5 (163-211)||(29225897-29225945)
chr5 (127-198)||(8173396-8173467)
chr5 (133-184)||(22572689-22572740)
chr5 (44-106)||(29226374-29226434)
chr5 (134-188)||(1175441-1175495)
chr5 (44-101)||(1621530-1621585)
chr5 (134-188)||(3670961-3671015)
chr5 (155-205)||(18641257-18641307)
chr5 (138-200)||(22028851-22028912)
chr5 (134-188)||(22653364-22653418)
chr5 (134-188)||(30773594-30773648)
chr5 (134-188)||(35236010-35236064)
chr5 (150-212)||(36909604-36909666)
chr5 (135-188)||(19955730-19955783)
chr5 (154-199)||(32815808-32815853)
chr5 (154-199)||(41662500-41662545)
chr5 (66-98)||(6462364-6462396)
chr5 (136-188)||(7897120-7897172)
chr5 (44-103)||(28363475-28363532)
[»] chr4 (56 HSPs)
chr4 (133-224)||(39276510-39276601)
chr4 (44-195)||(3535209-3535358)
chr4 (145-212)||(52327445-52327512)
chr4 (134-312)||(4149051-4149229)
chr4 (134-212)||(34812665-34812743)
chr4 (124-202)||(44555574-44555652)
chr4 (136-205)||(41173915-41173984)
chr4 (133-213)||(6323840-6323920)
chr4 (124-199)||(42617731-42617805)
chr4 (160-206)||(27611816-27611862)
chr4 (133-199)||(52831589-52831655)
chr4 (134-218)||(39033634-39033718)
chr4 (133-212)||(2103188-2103267)
chr4 (124-199)||(30802416-30802490)
chr4 (144-219)||(31494486-31494561)
chr4 (142-212)||(21501773-21501843)
chr4 (142-200)||(52986362-52986420)
chr4 (166-223)||(30070324-30070381)
chr4 (124-200)||(21191215-21191291)
chr4 (142-198)||(26026815-26026871)
chr4 (143-199)||(41758661-41758717)
chr4 (148-195)||(4120310-4120357)
chr4 (142-201)||(47789372-47789431)
chr4 (143-212)||(466743-466813)
chr4 (134-200)||(5645863-5645929)
chr4 (142-192)||(17425588-17425638)
chr4 (133-199)||(24418112-24418177)
chr4 (133-199)||(37713450-37713516)
chr4 (142-203)||(50570225-50570284)
chr4 (137-199)||(53431404-53431466)
chr4 (123-212)||(1162345-1162434)
chr4 (142-199)||(12637747-12637804)
chr4 (124-200)||(27247475-27247551)
chr4 (172-244)||(49262855-49262926)
chr4 (133-188)||(3919183-3919238)
chr4 (143-198)||(19450420-19450475)
chr4 (144-215)||(33890277-33890348)
chr4 (144-203)||(46765366-46765425)
chr4 (134-188)||(22431462-22431516)
chr4 (142-200)||(22814959-22815017)
chr4 (134-188)||(35580362-35580416)
chr4 (44-96)||(37392968-37393017)
chr4 (133-191)||(50133282-50133340)
chr4 (134-187)||(3930097-3930150)
chr4 (151-212)||(8130283-8130344)
chr4 (124-201)||(17896159-17896236)
chr4 (127-180)||(28162671-28162724)
chr4 (135-188)||(37114707-37114760)
chr4 (142-199)||(37713341-37713398)
chr4 (131-204)||(47138998-47139070)
chr4 (163-231)||(20530447-20530515)
chr4 (44-95)||(20988800-20988849)
chr4 (167-195)||(31235381-31235409)
chr4 (44-99)||(31736124-31736177)
chr4 (134-186)||(49551651-49551703)
chr4 (124-180)||(50812930-50812986)
[»] chr7 (39 HSPs)
chr7 (132-212)||(2525285-2525365)
chr7 (124-201)||(24314164-24314240)
chr7 (133-237)||(28175409-28175513)
chr7 (132-193)||(87160-87221)
chr7 (133-206)||(15050965-15051038)
chr7 (124-243)||(31740571-31740689)
chr7 (133-180)||(44235370-44235417)
chr7 (133-195)||(13438329-13438391)
chr7 (133-231)||(43911074-43911172)
chr7 (142-195)||(3837090-3837143)
chr7 (133-202)||(19683449-19683518)
chr7 (133-202)||(28039854-28039923)
chr7 (133-201)||(19087403-19087471)
chr7 (148-199)||(11991455-11991506)
chr7 (144-198)||(31627636-31627690)
chr7 (174-239)||(21578038-21578103)
chr7 (143-195)||(28543536-28543588)
chr7 (133-184)||(883879-883930)
chr7 (133-184)||(1243208-1243259)
chr7 (124-243)||(7379541-7379659)
chr7 (130-205)||(26769318-26769393)
chr7 (173-212)||(29234852-29234891)
chr7 (133-188)||(45672999-45673054)
chr7 (134-188)||(482407-482461)
chr7 (166-200)||(30339325-30339359)
chr7 (133-187)||(36112678-36112732)
chr7 (44-113)||(42967783-42967850)
chr7 (134-188)||(43135093-43135147)
chr7 (147-201)||(44235316-44235370)
chr7 (134-188)||(44597295-44597349)
chr7 (135-188)||(21375299-21375352)
chr7 (147-184)||(21561524-21561561)
chr7 (135-188)||(24171477-24171530)
chr7 (133-198)||(25129807-25129872)
chr7 (135-188)||(33027535-33027588)
chr7 (148-225)||(36122041-36122118)
chr7 (124-177)||(42967875-42967928)
chr7 (135-188)||(45221509-45221562)
chr7 (137-201)||(45352898-45352962)
[»] chr6 (23 HSPs)
chr6 (131-212)||(29052692-29052773)
chr6 (124-211)||(9749801-9749888)
chr6 (133-198)||(34544421-34544486)
chr6 (142-202)||(3341286-3341346)
chr6 (142-201)||(2748289-2748348)
chr6 (142-200)||(8014427-8014485)
chr6 (135-237)||(13692520-13692621)
chr6 (124-202)||(25142248-25142326)
chr6 (134-199)||(1288436-1288501)
chr6 (152-205)||(2255918-2255971)
chr6 (124-185)||(29490215-29490276)
chr6 (143-199)||(724711-724767)
chr6 (160-202)||(4912509-4912551)
chr6 (133-194)||(9750320-9750382)
chr6 (134-188)||(27720057-27720111)
chr6 (133-199)||(34431392-34431457)
chr6 (132-194)||(9195637-9195700)
chr6 (134-188)||(5301016-5301070)
chr6 (134-188)||(11016298-11016352)
chr6 (134-188)||(28077133-28077187)
chr6 (135-188)||(14227024-14227077)
chr6 (66-98)||(9749924-9749956)
chr6 (133-201)||(32662298-32662366)
[»] chr2 (46 HSPs)
chr2 (127-194)||(27679222-27679289)
chr2 (142-225)||(42139531-42139614)
chr2 (142-195)||(15967970-15968023)
chr2 (142-199)||(30804380-30804437)
chr2 (136-237)||(31063099-31063200)
chr2 (143-205)||(1660221-1660283)
chr2 (122-224)||(13463510-13463612)
chr2 (133-197)||(21721917-21721981)
chr2 (133-205)||(21938036-21938108)
chr2 (136-199)||(4548994-4549057)
chr2 (124-206)||(18491955-18492037)
chr2 (133-211)||(27863867-27863945)
chr2 (124-202)||(28249822-28249900)
chr2 (44-100)||(15804446-15804500)
chr2 (127-227)||(8752600-8752699)
chr2 (172-240)||(15804508-15804576)
chr2 (154-201)||(2346865-2346912)
chr2 (133-227)||(40910051-40910148)
chr2 (133-227)||(44984171-44984268)
chr2 (134-212)||(12238220-12238298)
chr2 (133-179)||(17487871-17487917)
chr2 (142-219)||(33625693-33625771)
chr2 (171-225)||(42034570-42034623)
chr2 (135-212)||(6176501-6176578)
chr2 (44-100)||(42034457-42034511)
chr2 (46-98)||(42139427-42139477)
chr2 (133-218)||(4751783-4751874)
chr2 (124-200)||(6472112-6472188)
chr2 (127-199)||(9613749-9613821)
chr2 (142-201)||(33651167-33651226)
chr2 (134-188)||(7510829-7510883)
chr2 (134-188)||(38843476-38843530)
chr2 (134-188)||(38880187-38880241)
chr2 (134-188)||(44276424-44276478)
chr2 (142-240)||(44810208-44810305)
chr2 (133-186)||(2759507-2759560)
chr2 (135-188)||(9263751-9263804)
chr2 (128-189)||(11235695-11235756)
chr2 (66-103)||(27679148-27679185)
chr2 (160-205)||(36514644-36514689)
chr2 (133-201)||(5946570-5946638)
chr2 (134-206)||(14477590-14477662)
chr2 (143-187)||(18030310-18030354)
chr2 (133-201)||(31854810-31854878)
chr2 (44-99)||(40909954-40910007)
chr2 (44-103)||(44810100-44810157)
[»] scaffold0040 (2 HSPs)
scaffold0040 (133-227)||(49744-49838)
scaffold0040 (44-113)||(49868-49935)
[»] scaffold0004 (2 HSPs)
scaffold0004 (142-210)||(338908-338976)
scaffold0004 (150-200)||(237843-237893)
[»] scaffold0349 (1 HSPs)
scaffold0349 (134-188)||(9479-9533)
[»] scaffold0027 (1 HSPs)
scaffold0027 (133-239)||(8074-8179)
[»] scaffold0009 (1 HSPs)
scaffold0009 (134-188)||(192721-192775)


Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 44 - 556
Target Start/End: Original strand, 35764633 - 35765145
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattgnnnnnnnttcaatatattatttttatgcca 143  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||| ||    
T  35764633 ataagctaattcaagtaggttatatagcttatcattatttatttcaattttacccttgtattcataattgaaaaaaattaaatatattatttttatgtca 35764732  T
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagcta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35764733 tttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaatcaactagattatcaactattagctataaattagcttatcagcta 35764832  T
Q  244 cccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagcctaaaactaaaacgaagtaagtatatgaaaatct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35764833 cccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacaaagcctaaaactaaaacgaagtaagtatatgaaaatct 35764932  T
Q  344 ttgctaaatagcctcttagtgctaagcttattgatcaaatttattaaccctgctataataaagctcagcaatcaaccctatcaaacctttaaaccccact 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35764933 ttgctaaatagcctcttagtgctaagcttattgatcaaatttattaaccctgctataataaagctcagcaatcaaccctatcaaacctttaaaccccact 35765032  T
Q  444 gctatgaagcttagcaattgaaactattgataatgttggccttttgtgtgtatgtgtattttcaacttttcaggagtgtaaactaactccaattctttct 543  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35765033 gctatgaagcttagcaattgaaactattgataatgtcggccttttgtgtgtatgtgtattttcaacttttcaggagtgtaaactaactccaattctttct 35765132  T
Q  544 ttgtcctttgttt 556  Q
    |||| ||||||||    
T  35765133 ttgttctttgttt 35765145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 2111013 - 2111080
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  2111013 ttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaattcaatca 2111080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 925970 - 926065
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 219  Q
    ||||||| ||||||  | |||||||||||||||| || |||||||| || |||||||||||||| ||||||||||||| |||| |||||| |||||    
T  925970 aatatatcatttttgcgtcatttcatatttataagctggttcaaccactcattttaccaaacacaacaaattcaatcagctagcttatcatctatt 926065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 8407584 - 8407639
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8407584 tttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 8407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 43408663 - 43408738
Alignment:
Q  125 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    |||||||| |||| || |||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||    
T  43408663 atatattaattttttgtcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaatc 43408738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 28947387 - 28947309
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||||| ||||||| |||||||||||| |||| |||||    
T  28947387 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 28947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 5111575 - 5111508
Alignment:
Q  137 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 204  Q
    |||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||||  ||||||||    
T  5111575 tatgtcatttcatattaataagctagttcaagcgcttattttaccaaacactacaaatcaaatcaact 5111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 36049612 - 36049541
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||| ||||||||||||||||  ||||| |||  |||||||||| |||||||| |||||||||||||||    
T  36049612 ttttatgtcatttcatatttataatttagttaaacaactaattttacaaaacactataaattcaatcaacta 36049541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 37740756 - 37740823
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||||||| || |||||||||| ||||||| || ||||||||||||||||||||| |||| ||||    
T  37740756 tttcatatttaaaagctagttcaacagctaattgtatcaaacactacaaattcaatcagctagcttat 37740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 6078538 - 6078444
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaa 228  Q
    ||||||| | ||||||||||||||  || ||| |||| |||||||| |||| ||||||||||||||||||||  ||||||| ||| || ||||||    
T  6078538 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaactattttatcaattatcagttataaa 6078444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 12524644 - 12524570
Alignment:
Q  163 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 237  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||   |||| |||||||  ||||||||    
T  12524644 ttcaacggctaattttaccaaacactacaaattcaatcagctaaattatctgttattggctataagctagcttat 12524570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 29861489 - 29861558
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||| ||||||| || ||| ||| || | ||||||||||||||||||||||||||||||||||| ||||    
T  29861489 catttgatatttaaaagctaattctacaggtaattttaccaaacactacaaattcaatcaactagcttat 29861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 33583953 - 33583892
Alignment:
Q  151 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| |||||||| | | |||||||||||||| |||||||||||||||||||| |||||    
T  33583953 tttataagctagttcagctgttaattttaccaaacgctacaaattcaatcaactagcttatc 33583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 6082470 - 6082399
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||| | ||||||||||||||  || ||| |||| |||||||| |||| ||||||||||||||||||||    
T  6082470 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaacta 6082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 12524367 - 12524305
Alignment:
Q  149 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||||| ||||||||||  ||||||||| |||| |||||||| |||||||||||| ||||    
T  12524367 tatttataagctagttcaactcctaattttatcaaatactacaaactcaatcaactagcttat 12524305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 13544076 - 13544014
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 196  Q
    ||||||| ||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||    
T  13544076 ttttatgtcattttaaatttataaacaacttcaaccgctaattttactaaacattacaaattc 13544014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 13680397 - 13680459
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 196  Q
    ||||||| ||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||    
T  13680397 ttttatgtcattttaaatttataaacaacttcaaccgctaattttactaaacattacaaattc 13680459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 17696151 - 17696201
Alignment:
Q  145 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    ||||||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  17696151 ttcatatttataaaccagttcaaccactaattttattaaacactacaaatt 17696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 3346171 - 3346102
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||||||||||||  || | |||||| |||||||| || ||| ||||||||||||||||||| ||||    
T  3346171 catttcatatttataagttattccaaccgttaattttatcatacattacaaattcaatcaactagcttat 3346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 27500629 - 27500572
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||| || |||||||||    
T  27500629 catttcaaatttataaactagttcaaccactaattttatcatacattataaattcaat 27500572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 38529706 - 38529642
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||| || ||| |||||||||  ||||||||  ||||||| |||||||||||||||||||||||    
T  38529706 ttatgtcaattcttatttataaggtagttcaattgctaattctaccaaacactacaaattcaatc 38529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 39746288 - 39746244
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaaca 186  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||    
T  39746288 cattttatatttatcaactagttgaaccgctaattttaccaaaca 39746244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 10831679 - 10831616
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||| ||||||||||| || ||| | ||||||||  ||||||||| ||||||||||||||    
T  10831679 catttcatttttataaactattttaactgttaattttaataaacactacgaattcaatcaacta 10831616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 25019567 - 25019488
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||| ||||||||| ||| ||   | || ||||||||||||||||||||||||| |||||||  |||||| |||||    
T  25019567 tttttatgtcatttcataattacaagtgactttaaccgctaattttaccaaacactacgaattcaacaaactagtttatc 25019488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 32202764 - 32202831
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    |||||||| ||||||||||| ||  ||||||| |||  ||||||||| ||||| ||||||||||||||    
T  32202764 tttttatgtcatttcatattcatggactagtttaactactaattttatcaaacgctacaaattcaatc 32202831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 2641882 - 2641828
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  2641882 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 2641828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 9211662 - 9211716
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  9211662 ttttatgtcattttacttttataagctagttgaaccgctaattttaccaaacact 9211716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 10861086 - 10861156
Alignment:
Q  131 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||| |||| |||||||||||||||| ||||||||   | | |||||| |||||| ||||||||||||||    
T  10861086 tatttatatgtcatttcatatttataagctagttcagttgttgattttatcaaacattacaaattcaatca 10861156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 4781257 - 4781322
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||| |||||||||||||||   |||||||||| |||||||||| ||| || | |||||||||    
T  4781257 ttttatgtcatttcatatttatatgatagttcaaccactaattttactaaatacaaaaaattcaat 4781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 6376730 - 6376697
Alignment:
Q  65 atatagcttatcattatttatttcaattttaccc 98  Q
    ||||||||||||||||||||| ||||||||||||    
T  6376730 atatagcttatcattatttatatcaattttaccc 6376697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 10113099 - 10113046
Alignment:
Q  152 ttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||||||||||||| ||||||||| |||| |||| | | |||||||||||    
T  10113099 ttataaactagttcaaccactaattttatcaaatactatagaatcaatcaacta 10113046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 14896445 - 14896498
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttac 180  Q
    ||||| ||||||||  ||||||||||||||| ||||||||||  ||||||||||    
T  14896445 atattttttttatgtgatttcatatttataagctagttcaacaactaattttac 14896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 25099629 - 25099576
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 187  Q
    ||||||| ||||| |||||||| | ||| |||||| ||||||||||||||||||    
T  25099629 ttttatgtcattttatatttatcagctacttcaacagctaattttaccaaacac 25099576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 5964771 - 5964679
Alignment:
Q  131 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    |||||||||| ||||| |||||||| |  || |||||  | |||||||||||||||||  || ||||||||||||| || ||| |||| ||||    
T  5964771 tatttttatgtcattttatatttatcagttacttcaaaagttaattttaccaaacactttaatttcaatcaactagtttttcagctataagct 5964679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 21367128 - 21367065
Alignment:
Q  163 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataa 227  Q
    ||||| ||||||||||||||||||||||||| |||||||  ||| ||||| | ||| ||||||||    
T  21367128 ttcaatcgctaattttaccaaacactacaaa-tcaatcagttagcttatccattatcagctataa 21367065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 30485123 - 30485060
Alignment:
Q  142 catttcatattt-ataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||||||| ||||  ||||||||||| ||||||||| |||| | |||||||||||||||||    
T  30485123 catttcatattttataagttagttcaaccgttaattttactaaac-caacaaattcaatcaacta 30485060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 39746092 - 39746056
Alignment:
Q  150 atttataaactagttcaaccgctaattttaccaaaca 186  Q
    |||||| |||||||| |||||||||||||||||||||    
T  39746092 atttatcaactagttgaaccgctaattttaccaaaca 39746056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 41808322 - 41808251
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||  |||||||||||||||||||||| ||| | || |||||   |||||||| |||||||||||||||    
T  41808322 tttttatatcatttcatatttataaactagtacaatcact-attttttaaaacactataaattcaatcaacta 41808251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 32326092 - 32325969
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaa----ctagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 219  Q
    ||||||| ||||||||| ||||||||| |||||||    ||||||||||  |||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  32326092 aatatatcatttttatgtcatttcataattataaataagctagttcaactactaattttaccaaacactacaaattccatcaactagcttatccactatt 32325993  T
Q  220 agctataaattagcttatcagcta 243  Q
    ||||||||  ||||||||||||||    
T  32325992 agctataagctagcttatcagcta 32325969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 9198126 - 9198045
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  9198126 aatatattatttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaacta 9198045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 310
Target Start/End: Original strand, 32109880 - 32110066
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    |||||||  |||||||| |||||||||| ||||| |||||| | || |||||||||||||||||||  |||||||||| ||   |||||  |||| | ||    
T  32109880 aatatatcttttttatgtcatttcatatatataagctagttaagccactaattttaccaaacactatgaattcaatcagctgatttatcctctatcatct 32109979  T
Q  224 ataaattagcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagcc 310  Q
    ||||  |||||||| ||||| || |||||| ||| ||||||| || |||| |||| | |||||||||||| ||||  ||||||||||    
T  32109980 ataagctagcttattagctatcctctataagctcgtccgctataacctagcttatcatttattcgctattttttatcaaacagagcc 32110066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 32582592 - 32582695
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 232  Q
    |||||||| ||||||||| |||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||  |||    
T  32582592 tttttatgtcatttcatacttataagctacttca-cggctaattttaccaaacactacaaattcaatcaactaggttatcagctatcagctctaaggtag 32582690  T
Q  233 cttat 237  Q
    |||||    
T  32582691 cttat 32582695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 9780555 - 9780466
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 231  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||  ||  ||||||||||| || || ||||||    
T  9780555 catttcgtatttataaactagttcaaccgttaattttaccaaacattacaaatccaatcagttaacttatcaactatcaggtaaaaatta 9780466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 11042062 - 11042137
Alignment:
Q  141 ccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaacta 217  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||  ||||||||||    
T  11042062 ccatttcatatttataagttagttcaaccactaattttaccaaacac-acaaattcaatcaattaacttatcaacta 11042137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 20873139 - 20873068
Alignment:
Q  128 tattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||| |||||||||| |||||  || |||||||||| |||||||||||||||| |||||||||    
T  20873139 tattatttttatgtcatttcatatgtataagttacttcaaccgctgattttaccaaacactaaaaattcaat 20873068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 3729869 - 3729927
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||||    
T  3729869 atttcatatttataagccagttcaaccgctaatcataccaaacactacaaattcaatca 3729927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 33674478 - 33674384
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    ||||||| ||||| | | || ||||||||||| | |||||||||| ||| |||||| ||||||||||||||||||| | |||| |||||||||||    
T  33674478 aatatatcattttcacgtcacttcatatttatgagctagttcaactgctgattttagcaaacactacaaattcaatgagctagcttatcaactat 33674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 50882420 - 50882477
Alignment:
Q  149 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  50882420 tatttataagctagttcagccgctaattttaccaatcactacaaattaaatcaactag 50882477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 33282390 - 33282275
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||| | ||||||| |||||||||||| |||  || |||||| |||||||||||||||   || |||||||||||||||  |||||  ||||||| |    
T  33282390 aatatatcacttttatgtcatttcatatttgtaacttaattcaacagctaattttaccaaatcatataaattcaatcaactaacttatctgctattagat 33282291  T
Q  224 ataaattagcttatca 239  Q
    |||| |||| ||||||    
T  33282290 ataagttagtttatca 33282275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 38053581 - 38053668
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatta 220  Q
    |||||||| |||||||||||||||| |||  ||||| ||||||||||| ||||||| || |||| || | |||| |||||||||||||    
T  38053581 tttttatgtcatttcatatttataagctatctcaactgctaattttactaaacactccatattcgattagctagcttatcaactatta 38053668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 1742799 - 1742876
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||| ||||||||  ||||||||||||||||| |||||||||| | ||||| | |||||| |||||||| |||||    
T  1742799 aatatatgatttttatatcatttcatatttataaattagttcaaccaccaatttcatcaaacattacaaatttaatca 1742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 32117967 - 32118036
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||||||||||| |||||||| | |||||| ||||||||||||| ||||||| ||| |||| |||||    
T  32117967 atttcatatttataagctagttcagctgctaatcttaccaaacactaaaaattcagtcagctagcttatc 32118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 37083990 - 37084066
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||| ||||||||| |||||||||||||||||| |||||  || ||||||||| ||||||||||| |||| |||||    
T  37083990 tttatgtcatttcatacttataaactagttcaaccactaatgctatcaaacacta-aaattcaatcatctagcttatc 37084066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 42603903 - 42603846
Alignment:
Q  145 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||||| ||| ||| |||||||||||||||||  |||||||||||||||||||||    
T  42603903 ttcatatttttaatctacttcaaccgctaattttattaaacactacaaattcaatcaa 42603846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 35682648 - 35682716
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||||||||||| ||| || || | ||| |||||||||||||||||||||||||||| ||| ||||    
T  35682648 atttcatatttataagctaattaaatctctagttttaccaaacactacaaattcaatcaattagcttat 35682716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 18084957 - 18084839
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||| | ||||||| ||||| ||||||||||  || ||||| || ||||||||||||||||| |||||||||||| |||  |||||  |||| | ||    
T  18084957 aatatatcagttttatgtcattttatatttataagttaattcaatcg-taattttaccaaacactgcaaattcaatcagctaacttatccgctatcatct 18084859  T
Q  224 ataaattagcttatcagcta 243  Q
    ||||  ||| ||||||||||    
T  18084858 ataagctagtttatcagcta 18084839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 32326182 - 32326130
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccc 98  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  32326182 ataagctaattcaagtagcttata--gcttatcattatttatatcaattttaccc 32326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 22838270 - 22838324
Alignment:
Q  145 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||  | |||||||||||||||||| |||| ||||||||||||||    
T  22838270 ttcatatttataagtttgttcaaccgctaattttatcaaagactacaaattcaat 22838324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 34778392 - 34778438
Alignment:
Q  170 gctaattttaccaaacactacaaattcaatcaactagattatcaact 216  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  34778392 gctaattttatcaaacactacaaattcattcaactagcttatcaact 34778438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 38147969 - 38148023
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 196  Q
    ||||||||||||||||  |||||||| |||||||||||| ||| |||||||||||    
T  38147969 catttcatatttataatttagttcaatcgctaattttactaaatactacaaattc 38148023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 42218283 - 42218337
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | ||||||||||||||||||||||||||||||    
T  42218283 ttttatgtcattttacatttatcagctagttcaaccgctaattttaccaaacact 42218337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 35696637 - 35696698
Alignment:
Q  162 gttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    |||||| | ||||||||||||||||||||||||||||||  |||| ||||| ||||| ||||    
T  35696637 gttcaatcactaattttaccaaacactacaaattcaatctgctagcttatccactataagct 35696698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 13799967 - 13799879
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||| | ||||||||| |||||  ||||||||  || ||||||||||||||||| ||| ||||  ||||||||||| ||| ||||||    
T  13799967 aatatactttttttatgctatttcgaatttataaggtacttcaaccgctaattttatcaagcactgtaaattcaatcagctaaattatc 13799879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 36618085 - 36618148
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||| |||||| |||| |||| ||||||||   |||||||||||| |||||||||||||||||    
T  36618085 tttttatgtcatttcgtattgataagctagttca---gctaattttaccgaacactacaaattcaat 36618148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 43822708 - 43822800
Alignment:
Q  170 gctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagctacccactataacctcatccg 262  Q
    |||| |||||||||||||| |||||||||| | |||| |||||  |||| ||||||||  |||||||||||  | || |||||| ||||||||    
T  43822708 gctagttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg 43822800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 1720154 - 1720214
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattc 106  Q
    ||||||||||||||||||||  |||| ||||||||||||||| || || |||||||| |||||    
T  1720154 ataagctaattcaagtagtt--tataacttatcattatttatctcgatattacccttatattc 1720214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 22827816 - 22827871
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||||||||||||||  ||||||||||||||||||||   || |||||||||||||    
T  22827816 atttcatatttataagttagttcaaccgctaattttatacaagactacaaattcaa 22827871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 45021384 - 45021353
Alignment:
Q  170 gctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||||||||||||||||||||||||    
T  45021384 gctaattttaccaaacactacaaattcaatca 45021353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 47108978 - 47109037
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaa 192  Q
    |||||||| |||||||||||||| | |||||| ||||| ||||||| |||||||| ||||    
T  47108978 tttttatgtcatttcatatttattatctagtttaaccgttaatttttccaaacacaacaa 47109037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 20451113 - 20451167
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  20451113 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 20451167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 37334638 - 37334708
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||||||||||  ||| || |  ||||||||||| |||||||| || |||||||||||||| |||||    
T  37334638 catttcatatttatatgctactttagtcgctaattttatcaaacactgcatattcaatcaactagcttatc 37334708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 39720083 - 39720137
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  39720083 ttttatgtcattttatatttatcagctagttgaaccgctagttttaccaaacact 39720137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 44560337 - 44560379
Alignment:
Q  159 ctagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||    
T  44560337 ctagttcaaccactaatttgaccaaacactacagattcaatca 44560379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 46972717 - 46972771
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  46972717 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 46972771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 52165559 - 52165505
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  52165559 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 52165505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 52867635 - 52867581
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  52867635 ttttatggcattttacatttatcagctagttgaaccgctaattttaccaaacact 52867581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 30956 - 31029
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 197  Q
    ||||||| ||||||||| ||||||||||||  ||| || || |||| |||||||||  ||| ||||||||||||    
T  30956 aatatatcatttttatgtcatttcatattttaaaattaatttaaccactaattttattaaatactacaaattca 31029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 21707782 - 21707835
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  21707782 tttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 21707835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 22815516 - 22815565
Alignment:
Q  149 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||||||||  |||||||||||||||||||| |||| | |||||||||||    
T  22815516 tatttataatttagttcaaccgctaattttatcaaagattacaaattcaa 22815565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 31126048 - 31126093
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacacta 189  Q
    |||||||||||||||||| ||||||| |||||||||| ||| ||||    
T  31126048 tttcatatttataaactacttcaacctctaattttactaaatacta 31126093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 10366586 - 10366529
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 103  Q
    |||||||||||||||| |||||||  ||||||||||  | |||||||| |||||||||||    
T  10366586 ataagctaattcaagtggtttata--gcttatcatttatcatttcaatattacccttgta 10366529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 28956245 - 28956289
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaatttt 178  Q
    ||||||| ||||||||||||||||| |||||||| || |||||||    
T  28956245 ttttatgtcatttcatatttataaattagttcaatcgttaatttt 28956289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 32645881 - 32645933
Alignment:
Q  146 tcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||||| ||||| ||| ||||||| |||| ||||||||||| |||||||||||    
T  32645881 tcatatatataagctacttcaaccactaaatttaccaaacattacaaattcaa 32645933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 42933708 - 42933640
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 204  Q
    ||||| ||||| |||||||||||||| || ||  | |||||||| ||||||| |||||||||| |||||    
T  42933708 ttatgtcatttaatatttataaactaatttaattgttaattttatcaaacacaacaaattcaagcaact 42933640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 54399569 - 54399633
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 197  Q
    |||||||| ||||| |||||||||| ||| |||||| | | ||| || |||||||||||||||||    
T  54399569 tttttatgtcatttgatatttataagctaattcaactgttgattctatcaaacactacaaattca 54399633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 54481547 - 54481491
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||||  ||| ||||| | |||||||| ||||||||| |||||||||    
T  54481547 atttcatatttataagttagctcaacagataattttatcaaacactataaattcaat 54481491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 166727 - 166814
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  166727 aatatatcatttctatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaattcaatcagctagcttat 166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 30173477 - 30173402
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  30173477 aatatattatttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaattcaat 30173402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 3949707 - 3949639
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  3949707 tttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaattcaatca 3949639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 32348407 - 32348483
Alignment:
Q  137 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatca 213  Q
    |||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32348407 tatgtcatttcaaatttataagctagctcaaccgctaattttaccaaacactacaaattcaatcaactagcttatca 32348483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 3160978 - 3161071
Alignment:
Q  125 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    |||||||  ||||||| |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  3160978 atatatttattttatgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaattcaatcagctagcttattaactat 3161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1714108 - 1714040
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  1714108 tttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaattcaatca 1714040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 35058682 - 35058750
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  35058682 tttttatgtcatttcatatttataaggtagttcaaccgctaattttaccaaacactacaaatttaatca 35058750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 21516574 - 21516474
Alignment:
Q  137 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagctta 236  Q
    |||| ||||||||||||| || ||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||||| ||||| | ||||||  |||||||    
T  21516574 tatgtcatttcatatttaaaagctatttcaaccactaattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagctta 21516475  T
Q  237 t 237  Q
    |    
T  21516474 t 21516474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 23908900 - 23908829
Alignment:
Q  125 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 196  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  23908900 atatatcatttttatgtcatttcatatttataagctagttcaaccactaatttcaccaaacattacaaattc 23908829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 132 - 313
Target Start/End: Complemental strand, 31117669 - 31117488
Alignment:
Q  132 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 231  Q
    |||||| || |||||||||||||||  ||| ||||| ||||||||||| ||||||||||||||||||||| |||| ||||   || | | ||||||  ||    
T  31117669 atttttttgtcatttcatatttatatgctatttcaatcgctaattttatcaaacactacaaattcaatcagctagcttatttgctctcaactataagcta 31117570  T
Q  232 gcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagcctaa 313  Q
    |||||| ||  | | ||||||| |||||| |||| || |||  |||| |||||| |||| ||||||||  |||| |||||||    
T  31117569 gcttataagtcatcaactataagctcatctgctacaagctaacttatcagttatccgctgttctttaccgaacaaagcctaa 31117488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 31795410 - 31795289
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagcta 243  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |   || |||||  |||| |||| |||  |||||||||||||     
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaattcaattagtcagtttatccgctatcagctttaagctagcttatcagctc 31795311  T
Q  244 cccactataacctcatccgcta 265  Q
     ||||| |||  ||||||||||    
T  31795310 tccactctaagttcatccgcta 31795289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 5923865 - 5923933
Alignment:
Q  147 catatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaac 215  Q
    ||||||||||| |||||||||||  |||||||||||||||||| ||||||||||| |||| ||||||||    
T  5923865 catatttataagctagttcaaccattaattttaccaaacactaaaaattcaatcagctagcttatcaac 5923933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 11337313 - 11337241
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||| ||||||||| |||||| |||| ||||||||||||||| || |||||||||||||||| ||||||||||    
T  11337313 atatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaat 11337241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 11495332 - 11495260
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||| ||||||||| |||||| |||| ||||||||||||||| || |||||||||||||||| ||||||||||    
T  11495332 atatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaat 11495260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 28870541 - 28870462
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||||  ||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| |||||| |||||    
T  28870541 tttttatgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatc 28870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 42747725 - 42747795
Alignment:
Q  167 accgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 237  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||  |||| ||||||||| ||||||||    
T  42747725 accgcaaattttaccaaacactacaaattcaattaactagcttatcctctatcagctataaactagcttat 42747795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 15602059 - 15601976
Alignment:
Q  121 ttcaatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||| || |||||| || ||||||||||| |||||||||||||||| |||||||||  |||| ||| |||||||||||||||    
T  15602059 ttcaataaatcatttttgtgtcatttcatatt-ataaactagttcaaccactaattttaataaacgctataaattcaatcaacta 15601976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 32602949 - 32603005
Alignment:
Q  145 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||    
T  32602949 ttcatatttataagctacttcaaccactaattttactaaacactacaaattcaatca 32603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 7460250 - 7460328
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||| ||| |||||||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||    
T  7460250 ttttcatgtcatttcatatatataagctagtttaaccgctaagtttac-aaacactacaaattcaatcatctagcttatc 7460328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 28870864 - 28870946
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    |||||||| |||||| |||||||   |||||||||  |||||||||||||||||||||||| |||||  ||||| |||||||||||    
T  28870864 tttttatgtcatttcgtatttat---ctagttcaatagctaattttaccaaacactacaaaatcaattcactagcttatcaactat 28870946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 35926580 - 35926514
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacac--tacaaattcaatcaactag 206  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  35926580 catttcatacttataagctagttcaaccactaattttaccaaacactgtacaaattcaatcagctag 35926514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 1415873 - 1415987
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaatttta-ccaaacactacaaattcaatcaactagattatcaactattagc 222  Q
    |||||||  |||||||| ||||||| |||||||| |||||| |||||||||||||| | |||||||||||| | ||||| |||| | |||  |||| |||    
T  1415873 aatatatcttttttatgtcatttcacatttataagctagtttaaccgctaattttatcaaaacactacaaactaaatcacctagctcatcttctatcagc 1415972  T
Q  223 tataaattagcttat 237  Q
    |||||  ||||||||    
T  1415973 tataagctagcttat 1415987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 35272527 - 35272453
Alignment:
Q  163 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 237  Q
    |||||||| ||||||||| |||||||||||||||||||| |||| |||||   ||||||||||||  ||||||||    
T  35272527 ttcaaccgataattttactaaacactacaaattcaatcagctagcttatccgttattagctataagctagcttat 35272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 20791874 - 20791781
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 237  Q
    ||||| |||||||| ||| ||||| ||| ||||||||||||||||||||||||| | | |||| ||| | ||||| ||||||||  ||||||||    
T  20791874 tttcacatttataagctacttcaatcgccaattttaccaaacactacaaattcagttagctagcttacccactatgagctataatctagcttat 20791781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 32359334 - 32359395
Alignment:
Q  151 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |||| |||||    
T  32359334 tttataagctacttcaaacgctaattttaccaaacattacaaattcaatcagctagtttatc 32359395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 38322043 - 38321958
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    |||||||| | |||||||||||| |  ||| ||  ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  38322043 tttttatgtcttttcatatttatcagttaggtcggccgttaattttaccaaacactacaaattcaaacaactagtttatccactat 38321958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 11611678 - 11611638
Alignment:
Q  161 agttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  11611678 agttcaaccgctaattttaccaaacacttcaaattcaatca 11611638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 22593586 - 22593514
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 196  Q
    |||||||  |||||||| |||||||||||||||| |||||  ||| |||||||||| ||||||||| ||||||    
T  22593586 aatatatattttttatgtcatttcatatttataagctagtcgaactgctaattttatcaaacactataaattc 22593514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 15801277 - 15801394
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||| | ||||||| ||||||||||||||||  || ||||| || ||||||||||||||| | |||||||||||| |||  ||||| ||||| | ||    
T  15801277 aatatatcagttttatgtcatttcatatttataagtta-ttcaatcg-taattttaccaaacattgcaaattcaatcagctaacttatccactatcatct 15801374  T
Q  224 ataaattagcttatcagcta 243  Q
    ||||  ||| ||||||||||    
T  15801375 ataagctagtttatcagcta 15801394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 40942416 - 40942483
Alignment:
Q  132 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||| ||||| |||||| | |  ||||||||||||||||||||||||||| | ||||||||||    
T  40942416 atttttatgtcattttatatttgtcagttagttcaaccgctaattttaccaaacaattcaaattcaat 40942483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 2859234 - 2859176
Alignment:
Q  133 tttttatgccatttcatatttataaa-ctagttcaaccgctaattttaccaaacactac 190  Q
    ||||||||||||||||||||||||||  |||||||||| || |||| ||||||||||||    
T  2859234 tttttatgccatttcatatttataaagttagttcaaccactgatttcaccaaacactac 2859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 34619213 - 34619167
Alignment:
Q  160 tagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  34619213 tagttcaactgttaattttaccaaaccctacaaattcaatcaactag 34619167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 40856677 - 40856611
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||| ||||||  | |||||||||    
T  40856677 tttttatatcatttcatatttataagttagttcaaccgctaattttatcaaacatcataaattcaat 40856611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 33644722 - 33644681
Alignment:
Q  72 ttatcattatttatttcaattttacccttgtattcataattg 113  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  33644722 ttatcatcatttatttcaattttacccttgtattcttaattg 33644681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 4372861 - 4372761
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagc 241  Q
    ||||||||||||||||  |||||||||||||||| |||  ||||||| ||| |||||| || ||| ||||  ||||| |||| |||  |||||||| |||    
T  4372861 catttcatatttataagttagttcaaccgctaatcttagaaaacactccaagttcaataaattagtttatttactatcagctttaagctagcttataagc 4372762  T
Q  242 t 242  Q
    |    
T  4372761 t 4372761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 36021204 - 36021267
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    ||||||| |||||| ||||||||| |||| ||| |||||||| ||||| ||||||||||||||||    
T  36021204 ttttatgtcatttcgtatttataagctagctca-ccgctaatgttaccgaacactacaaattcaa 36021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 46087405 - 46087354
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 186  Q
    |||||| ||||| |||||| | |||||||| |||||||||||||||||||||    
T  46087405 tttatgtcattttatatttctcaactagttgaaccgctaattttaccaaaca 46087354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 34087664 - 34087718
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  34087664 ttttatgacattttacatttatcagctagttgaaccgctaattttaccaaacact 34087718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 49219953 - 49219899
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  49219953 ttttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 49219899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 30418497 - 30418542
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacacta 189  Q
    |||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  30418497 tttcatgtttataagctagttcaaccactaattttacctaacacta 30418542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 40888500 - 40888553
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| | |||||||| |||||| |||||||| ||||||||||||||    
T  40888500 tttatgtcattttacatttataagctagttgaaccgctatttttaccaaacact 40888553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 42964534 - 42964587
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 187  Q
    ||||||| ||||| | |||||| |||||||| ||||| ||||||||||||||||    
T  42964534 ttttatgtcattttacatttatcaactagttgaaccgttaattttaccaaacac 42964587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 43024573 - 43024630
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||| |||||||| || |||| |||||| ||||||||  ||||||||||||||||||    
T  43024573 catttaatatttattaaatagtacaaccgttaattttattaaacactacaaattcaat 43024630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 48817377 - 48817417
Alignment:
Q  160 tagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  48817377 tagttcaactgctaattttacataacactacaaattcaatc 48817417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 2942057 - 2942174
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||| | ||||||| ||||| ||||||||||  |||||||||| ||||||||||||||| |||||||||||| ||||||| |||||  |||| ||||    
T  2942057 aatatatcacttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaattcaaccaactagcttatccgctatcagct 2942156  T
Q  224 ataaattagcttatcagc 241  Q
    ||||  ||||||||||||    
T  2942157 ataagctagcttatcagc 2942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 28363539 - 28363605
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28363539 tttatgtcatttcatacttataaactagttcaacagctaatattaccaaacactacaaattcaatca 28363605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 17902785 - 17902864
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||| || | ||||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  17902785 tttttatgtcaatacatatttataagctagttcaactgctagttttaccaaacactacaaatttaatcaactagtttatc 17902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 17259595 - 17259672
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||  |||||||| ||||||||| |||||| |||||||||||||||||||||| || |||| ||||||||||||    
T  17259595 aatatatcttttttatgtcatttcatacttataagctagttcaaccgctaattttactaaccactgcaaattcaatca 17259672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 41892848 - 41892771
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||  ||||||||  ||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||    
T  41892848 aatatatattttttatggtatttcatatttataagctagtttaaccgttaattataccaaacactacaaattcaatca 41892771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 43315610 - 43315537
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||    ||||||||||||||||||||||||    
T  43315610 tttttatgacatttcatatttataagctagttcaaccactaattttgatcaacactacaaattcaatcaactag 43315537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 32046915 - 32046974
Alignment:
Q  141 ccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  32046915 ccatttcatatttaaaagctagttcaaccgctaatattaccaaacactccaaattcaatc 32046974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 31677291 - 31677369
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    |||| ||| |||||||||||| ||| ||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||    
T  31677291 ttttgatgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacactgtaaattcaatcagctagcttat 31677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 16869981 - 16869924
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 103  Q
    |||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||    
T  16869981 ataagctaattcaagtagcttata--gcttatcattttttatttcaattttacccttgta 16869924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 31806671 - 31806595
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||| | ||||||| ||||||||||||||||  |||||||| |  ||||||||||||||| |||||||||||||    
T  31806671 aatatatcacttttatgtcatttcatatttataagatagttcaatccttaattttaccaaacaatacaaattcaatc 31806595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 34640176 - 34640280
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 232  Q
    |||||||| |||||||||||||||| |||    |||| |||||||||||||||| |||||||||||| | |||| |||||  |||| ||||||||  |||    
T  34640176 tttttatgtcatttcatatttataagctacaataaccactaattttaccaaacattacaaattcaataagctagcttatccgctatcagctataagctag 34640275  T
Q  233 cttat 237  Q
    |||||    
T  34640276 cttat 34640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 1621486 - 1621438
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttacc 181  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  1621486 tttttatgtcatttcatatttataagctacttcaaccgctaattttacc 1621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 1786947 - 1786868
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||| ||||||||||||||  ||||||||||||  | ||||| |||||||||||||| | ||||| |||| |||||    
T  1786947 tttttatgtcatttcatatttatcgactagttcaaccattgattttgccaaacactacaaacttaatcagctagtttatc 1786868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 6462308 - 6462239
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||||||||||| ||| |  | ||||||||||||| |||||||||||||||||||| |||| |||||    
T  6462308 catttcatatttataacctaatg-agccgctaattttactaaacactacaaattcaatcagctagcttatc 6462239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 31812155 - 31812205
Alignment:
Q  161 agttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||| ||||    
T  31812155 agttgaaccgttaattttaccaaacactacaaattcaatcagctagcttat 31812205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 15444122 - 15444175
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||    
T  15444122 tttatgtcattttatatttatcaactagttgaaccgctatttttaccaaacact 15444175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 17903168 - 17903107
Alignment:
Q  151 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||  |||||||||| |||||||||||||||||  || |||||||||||||| |||||    
T  17903168 tttataagttagttcaaccactaattttaccaaacacggcacattcaatcaactagtttatc 17903107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 25832442 - 25832361
Alignment:
Q  131 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||| |||| ||||||||||||||||||||||| ||| | ||||||||  ||||| || |||||||| ||| || ||||||    
T  25832442 tatttgtatgtcatttcatatttataaactagttgaactgttaattttataaaacattaaaaattcaaccaattaaattatc 25832361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 5390454 - 5390494
Alignment:
Q  159 ctagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  5390454 ctagttcaaccgctcatttaaccaaacactacaaattcaat 5390494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 9397225 - 9397173
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 186  Q
    ||||||| ||||||| |||||| | |||||| |||||||||||||||||||||    
T  9397225 ttttatgtcatttcacatttatcatctagttgaaccgctaattttaccaaaca 9397173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 29225945 - 29225897
Alignment:
Q  163 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||| ||||||||| |||||||||||||||||| || |||||||||    
T  29225945 ttcaaccactaattttatcaaacactacaaattcaaccagctagattat 29225897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 8173396 - 8173467
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    ||||| || ||||| |||||||||||||||   ||||||| |||||||||||| ||||  ||||||||||||    
T  8173396 atatttttgttatgtcatttcatatttataggttagttcatccgctaattttatcaaaagctacaaattcaa 8173467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 22572689 - 22572740
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 184  Q
    |||||||| |||||||||||||||| ||||||||| | ||||||||| ||||    
T  22572689 tttttatgtcatttcatatttataagctagttcaatctctaattttatcaaa 22572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 29226434 - 29226374
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattc 106  Q
    |||||||| ||||||||| |||||   |||||||||||||||| ||||||||||| |||||||    
T  29226434 ataagctagttcaagtagcttataa--cttatcattatttattccaattttacccatgtattc 29226374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 1175441 - 1175495
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  1175441 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 1175495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 1621585 - 1621530
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttg 101  Q
    |||||||||||||||||| |||||  |||||||| | ||||| |||||||||||||||    
T  1621585 ataagctaattcaagtagcttata--gcttatcagtttttatctcaattttacccttg 1621530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 3670961 - 3671015
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  3670961 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 3671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 18641257 - 18641307
Alignment:
Q  155 taaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||| |||||||||| |||| |||| |||||||| ||||||||||||||||    
T  18641257 taaattagttcaaccactaagtttatcaaacacttcaaattcaatcaacta 18641307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 22028851 - 22028912
Alignment:
Q  138 atgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||||||||| |||||| ||||||||||  || ||||||| |||||||| ||||||||||    
T  22028851 atgccatttcatacttataagctagttcaacgact-attttacgaaacactataaattcaatc 22028912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 22653364 - 22653418
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  22653364 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 22653418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 30773648 - 30773594
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  30773648 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 30773594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 35236064 - 35236010
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  35236064 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 35236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 36909604 - 36909666
Alignment:
Q  150 atttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||| | ||||||||||||| ||||||| |||||||| ||||||||||  ||||| |||||    
T  36909604 atttatcagctagttcaaccgccaattttatcaaacacttcaaattcaattcactagcttatc 36909666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 19955783 - 19955730
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||||||||| | |||||| | |||||| |||||||| ||||||||||||||    
T  19955783 tttatgccattttacatttatcagctagttgaaccgctatttttaccaaacact 19955730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 32815808 - 32815853
Alignment:
Q  154 ataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||||||| ||||||||||||||| || |||| ||||    
T  32815808 ataaactagttcaaccgttaattttaccaaacattataaatccaat 32815853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 41662545 - 41662500
Alignment:
Q  154 ataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||    
T  41662545 ataaactagttcaaccgttaattttatcaaacattacaaatccaat 41662500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 6462396 - 6462364
Alignment:
Q  66 tatagcttatcattatttatttcaattttaccc 98  Q
    |||||||||||||||||||| ||||||||||||    
T  6462396 tatagcttatcattatttatctcaattttaccc 6462364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 7897120 - 7897172
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||| ||||| |||||||| | |||||| |||||||||||||| ||||||||    
T  7897120 ttatgtcattttatatttatcagctagttgaaccgctaattttatcaaacact 7897172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 28363475 - 28363532
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 103  Q
    ||||||||| |||||||| |||||  |||||||||| ||||| |||||||||| ||||||    
T  28363475 ataagctaactcaagtagcttata--gcttatcattttttatctcaattttactcttgta 28363532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 39276510 - 39276601
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagcta 224  Q
    |||||||| ||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||    
T  39276510 tttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaattcaatcagctaggttataagctattagcta 39276601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 3535209 - 3535358
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattgnnnnnnnttcaatatattatttttatgcca 143  Q
    |||||||||||||||||| |||||  |||||||||||| |||   |||||||||| ||||||| |||| |       ||  |||||||||||||||| ||    
T  3535209 ataagctaattcaagtagcttata--gcttatcattatatatccaaattttacccctgtattcttaatcgaaaagaattagatatattatttttatgtca 3535306  T
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    ||||||||||||||  || |||||| | ||| ||||||||||||||||||||    
T  3535307 tttcatatttataagttaattcaactggtaaatttaccaaacactacaaatt 3535358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 52327445 - 52327512
Alignment:
Q  145 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||| |||||    
T  52327445 ttcatatttataagctagttcaactgctaattttaccaaacactacaaattcaaccagctagcttatc 52327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 312
Target Start/End: Original strand, 4149051 - 4149229
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagc 233  Q
    ||||||| ||| ||||||||||||| ||| ||||||  ||||||||||||||||| |||||||||||   ||| ||||| ||||| ||||||||  || |    
T  4149051 ttttatgtcatctcatatttataaattagctcaaccagtaattttaccaaacactgcaaattcaatcggttagtttatccactataagctataagctaac 4149150  T
Q  234 ttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagccta 312  Q
    |||| | |||  | |||||| |||||||| || || |||  |||| | |||||| ||||| ||||| ||||| ||||||    
T  4149151 ttataatctattcgctataagctcatccgttataagctatcttatcaattattcactattttttaccaaacaaagccta 4149229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 34812743 - 34812665
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||||| ||||||| |||||||||||| |||| |||||    
T  34812743 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 34812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 44555652 - 44555574
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||| | ||||||| ||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||| ||||    
T  44555652 aatatatcacttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacactacagattcattcaa 44555574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 41173915 - 41173984
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||| ||||||||||||| || ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  41173915 ttatgtcatttcatatttacaagctagttcaatcgataattttaccaaacaatacaaattcaatcaacta 41173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 6323920 - 6323840
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatca 213  Q
    |||||||| |||||||||||||| | | |||||| || |||||||||| ||||||||| ||||||||||||||| ||||||    
T  6323920 tttttatgtcatttcatatttatcagcaagttcagccactaattttacaaaacactacgaattcaatcaactagtttatca 6323840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 42617731 - 42617805
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||    
T  42617731 aatattttattttcatgtcatttcatatttataaattagttcaaccgttaa-tttactaaacactacaaattcaat 42617805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 27611862 - 27611816
Alignment:
Q  160 tagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  27611862 tagttcaactgctaattttaccaaacactacaaattcaatcaactag 27611816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 52831589 - 52831655
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||||||||||||||| ||| ||||| |||| |||||||| ||| |||||||||||||    
T  52831589 tttttatgccatttcatatttataagctacttcaatcgctgattttaccgaactctacaaattcaat 52831655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 39033634 - 39033718
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    ||||||| |||||||||||| |||  ||||| ||||| |||||||| ||||||||||||||||||||| |||  |||||| ||||    
T  39033634 ttttatgtcatttcatatttttaagttagtttaaccgataattttatcaaacactacaaattcaatcagctaatttatcatctat 39033718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 2103267 - 2103188
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||| ||||| ||||||||||  | ||||||||  |||||||||||||||||||||||||||| | |||| |||||    
T  2103267 tttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaataagctagcttatc 2103188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 30802416 - 30802490
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||| | ||||||| ||||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  30802416 aatatatcagttttatgtcatttcatatttataagttaattcaatcg-taattttaccaaacactacaaattcaat 30802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 31494561 - 31494486
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 219  Q
    |||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||| ||| | | |||||| |||||    
T  31494561 tttcatatttataatctaattcaaccgctaattttgccaaacaatacaaattcaaccaaattgtttatcagctatt 31494486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 21501773 - 21501843
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||||||||| |||| ||||| |||| |||||    
T  21501773 catttcatacttataagctagtttaaccgctaattctaccaaacactacgaatttaatcagctagtttatc 21501843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 52986420 - 52986362
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||||||||| || ||| |||||||||||||||||||| |||||||||||| ||||    
T  52986420 catttcatatttagaagctacttcaaccgctaattttaccatacactacaaatttaatc 52986362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 30070324 - 30070381
Alignment:
Q  166 aaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||| ||||| ||||    
T  30070324 aaccgctaattttaccaaacactacaaattcaattagctagcttatccactatgagct 30070381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 21191215 - 21191291
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||| |||||||||  ||| |||| ||||||| ||| |||||| |||||||||||||||| || ||||||||||    
T  21191215 aatatataatttttatgttattccatacttataaattagctcaacctctaattttaccaaacaatataaattcaatc 21191291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 26026815 - 26026871
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    ||||||||||||||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  26026815 catttcatatttataaattagttcaattgctaaatttatcaaacactacaaattcaa 26026871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 41758661 - 41758717
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||||||||   ||||||||| |||||||||||| |||||||||||||||||    
T  41758661 atttcatatttatacgttagttcaactgctaattttaccgaacactacaaattcaat 41758717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 4120310 - 4120357
Alignment:
Q  148 atatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  4120310 atatttataaactagttcaactgataattttatcaaacactacaaatt 4120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 47789431 - 47789372
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||| |||||| || | | ||||||||||||||||||||||||||||||| |||||||    
T  47789431 catttcgtatttagaagcaacttcaaccgctaattttaccaaacactacaaaatcaatca 47789372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 466743 - 466813
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaa-cactacaaattcaatcaactagattatc 212  Q
    ||||||||||||||| | ||||||||| |||| ||||| ||| |||| ||||||||||||||||| |||||    
T  466743 atttcatatttataagcaagttcaaccactaaatttacaaaaacacttcaaattcaatcaactagcttatc 466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 5645929 - 5645863
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||| |||||||||||||||||| |  |||||  | |||||||||||||| |||||||||||||    
T  5645929 ttttatggcatttcatatttataaacaaaatcaacaaccaattttaccaaacaatacaaattcaatc 5645863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 17425638 - 17425588
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaa 192  Q
    ||||||||||||||||  || ||||||| ||||||||||||||||||||||    
T  17425638 catttcatatttataagttacttcaaccactaattttaccaaacactacaa 17425588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 24418177 - 24418112
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||| |||||||||||||||| ||| || |||  ||||||| |||||||||||||||||||||    
T  24418177 tttttatgtcatttcatatttataagctacttgaacaactaattt-accaaacactacaaattcaat 24418112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 37713450 - 37713516
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||| |||||||||||||||| |||||||  |  ||||||||||| |||| ||||||||||||    
T  37713450 tttttatgtcatttcatatttataagctagttccgcaactaattttacccaacattacaaattcaat 37713516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 50570284 - 50570225
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaac 203  Q
    ||||||||||||||||| || ||||||||  ||||||||||||||||| |||||| ||||||    
T  50570284 catttcatatttataaattaattcaaccg--aattttaccaaacactataaattcgatcaac 50570225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 53431466 - 53431404
Alignment:
Q  137 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||| ||||||||||||||||| |||||||||  |||||||||| ||||| | ||||||||||    
T  53431466 tatgtcatttcatatttataaattagttcaacgactaattttacgaaacattgcaaattcaat 53431404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 1162345 - 1162434
Alignment:
Q  123 caatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||| ||||||||| ||||| ||| ||||||  ||||  |||   ||||||||||||| | |||||||||||||| ||||||||||    
T  1162345 caatatatcatttttatggcattttataattataagatagtctaacgattaattttaccaaatattacaaattcaatcagctagattatc 1162434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 12637747 - 12637804
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||||| | |||| ||| ||||||||||||||||| ||| ||||||||    
T  12637747 catttcatatttataagcaagttaaacagctaattttaccaaacattactaattcaat 12637804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 27247475 - 27247551
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||| |||||||||  ||| |||| ||||||| ||| |||| | |||||||||||||||| || ||||||||||    
T  27247475 aatatataatttttatgttattccatacttataaattagctcaatctctaattttaccaaacaatataaattcaatc 27247551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 49262855 - 49262926
Alignment:
Q  172 taattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagctac 244  Q
    ||||||||||||||||||||  ||||||||| ||  |||||  ||||||||||||| ||||||||||| ||||    
T  49262855 taattttaccaaacactacat-ttcaatcaattatcttatccgctattagctataagttagcttatcaactac 49262926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 3919238 - 3919183
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||||| ||||| | |||||| |||||||| ||||||||| |||||||||||||    
T  3919238 tttttatgtcattttacatttatcaactagttgaaccgctaactttaccaaacact 3919183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 19450475 - 19450420
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||| ||| |||||    
T  19450475 attttatatttatcaactagttcaactgctaatattaccaaacacttcaatttcaa 19450420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 33890277 - 33890348
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaac 215  Q
    ||||||||||||||  ||||||||| | |||||||| |||||| |||||||| |||| ||||  ||||||||    
T  33890277 tttcatatttataagatagttcaacagttaattttatcaaacattacaaatttaatcgactaacttatcaac 33890348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 46765425 - 46765366
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaac 203  Q
    ||||||||||||||   || ||||  |||||||||| |||||||||||||||||||||||    
T  46765425 tttcatatttataagtaagctcaagtgctaattttagcaaacactacaaattcaatcaac 46765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 22431462 - 22431516
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| ||||||||||  ||||| |||| ||||||||||||||||||    
T  22431462 ttttatgtcattttatatttataagttagttgaaccactaattttaccaaacact 22431516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 22815017 - 22814959
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||| |||||||||| ||||||||| ||| ||||| | ||||||||||||||| ||||    
T  22815017 catttgatatttataagctagttcaagcgccaatttcatcaaacactacaaatttaatc 22814959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 35580416 - 35580362
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| || ||||||| |||||| ||||| |||||||||||||||||    
T  35580416 ttttatgtcattttatgtttataagctagttgaaccgttaattttaccaaacact 35580362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 37393017 - 37392968
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttac 96  Q
    |||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  37393017 ataagctaattcaagtac---atatagcttatcattatttatctcaattttac 37392968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 50133282 - 50133340
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactaca 191  Q
    |||| ||| ||||| |||||||||| ||||||||||  |||||||||||||||| ||||    
T  50133282 ttttgatgtcatttgatatttataagctagttcaacatctaattttaccaaacaataca 50133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 3930150 - 3930097
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 187  Q
    ||||||| ||||| | |||||| |||||||| |||| |||||||||||||||||    
T  3930150 ttttatgtcattttacatttatcaactagttgaacctctaattttaccaaacac 3930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 8130344 - 8130283
Alignment:
Q  151 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| |||||||||| ||||  |||| |||| |||||||||||||||| |||| |||||    
T  8130344 tttataagctagttcaactgctagctttatcaaatactacaaattcaatcagctagcttatc 8130283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 17896159 - 17896236
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| ||||||||  |||||| ||||||||  | ||||| ||| |||||| | ||||||||| |||||||||||    
T  17896159 aatatattttttttatgttatttcaaatttataagtttgttcagccgttaatttcatcaaacactaaaaattcaatca 17896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 28162724 - 28162671
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttac 180  Q
    ||||| |||||||| |||||||||||||| ||||| |||||| | |||||||||    
T  28162724 atattttttttatgtcatttcatatttatcaactaattcaacagttaattttac 28162671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 37114760 - 37114707
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  37114760 tttatgtcatttgacatttatcaactagttgaaccgctatttttaccaaacact 37114707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 37713341 - 37713398
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||||| |||||||  |  ||||||||||| |||| ||||||||||||    
T  37713341 catttcatatttataagctagttccgcaactaattttacccaacattacaaattcaat 37713398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 47139070 - 47138998
Alignment:
Q  131 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 204  Q
    ||||||||||  |||| ||||||| |||| ||||||||  ||||||  |||||||||| |||||||||||||||    
T  47139070 tatttttatgttattttatatttaaaaaccagttcaacaactaattc-accaaacacttcaaattcaatcaact 47138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 20530515 - 20530447
Alignment:
Q  163 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 231  Q
    ||||||||||||||||||||||||||  || || ||| | |||| || |||||||| |||||| |||||    
T  20530515 ttcaaccgctaattttaccaaacactttaattttaataagctagtttttcaactataagctatcaatta 20530447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 20988849 - 20988800
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaatttta 95  Q
    |||||||||||||||||| |||||  |||||||||| ||||| |||||||||    
T  20988849 ataagctaattcaagtagcttata--gcttatcattttttatctcaatttta 20988800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 31235409 - 31235381
Alignment:
Q  167 accgctaattttaccaaacactacaaatt 195  Q
    |||||||||||||||||||||||||||||    
T  31235409 accgctaattttaccaaacactacaaatt 31235381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 31736177 - 31736124
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccct 99  Q
    ||||||||||||||||||||  |||||||||| ||| ||||| | |||||||||||    
T  31736177 ataagctaattcaagtagtt--tatagcttataattttttatctaaattttaccct 31736124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 49551651 - 49551703
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 186  Q
    ||||||| ||||| | ||||| || |||||| |||||||||||||||||||||    
T  49551651 ttttatgtcattttacatttacaagctagttgaaccgctaattttaccaaaca 49551703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 50812930 - 50812986
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttac 180  Q
    ||||||||| ||||||| ||||| ||||||||||  ||||||||||| ||| |||||    
T  50812930 aatatattacttttatgtcattttatatttataagatagttcaaccgataactttac 50812986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 2525285 - 2525365
Alignment:
Q  132 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||| |||||    
T  2525285 atttttatgcaatttcatatttataagctagttcagctgctaattttaccaaacaatacaaattcaatcagctagcttatc 2525365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 24314240 - 24314164
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||    
T  24314240 aatatatcacttttatgccatttcatatttacaaactaattcaaccgttaattttaccaaa-actacaaattcaatca 24314164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 28175513 - 28175409
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 232  Q
    |||||||| |||||||||||| ||| ||| |||||||||||||| || |||||||||||||||||  ||||||| | |||  |||| ||||||||  |||    
T  28175513 tttttatgtcatttcatatttgtaagctacttcaaccgctaattatatcaaacactacaaattcagccaactagctgatccgctatcagctataagctag 28175414  T
Q  233 cttat 237  Q
    |||||    
T  28175413 cttat 28175409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 87221 - 87160
Alignment:
Q  132 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaa 193  Q
    ||||||||| ||||||||||||| || ||| |||||||||||||||||| ||||||||||||    
T  87221 atttttatgtcatttcatatttacaatctaattcaaccgctaattttacaaaacactacaaa 87160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 15050965 - 15051038
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    |||||||| ||||||||| | |||| ||||||||||| ||||||||||||||||||  ||||||||||| ||||    
T  15050965 tttttatgtcatttcatactcataagctagttcaaccactaattttaccaaacactctaaattcaatcagctag 15051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 31740571 - 31740689
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||||| |||||||  |||||||||||||||  || ||||| || ||||||||||||||||| |||||||||| | |||  |||||  |||| | ||    
T  31740571 aatatattagttttatgttatttcatatttataagttaattcaatcg-taattttaccaaacactgcaaattcaataagctaacttatctgctatcatct 31740669  T
Q  224 ataaattagcttatcagcta 243  Q
    ||||| ||| ||||||||||    
T  31740670 ataaactagtttatcagcta 31740689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 44235417 - 44235370
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttac 180  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  44235417 tttttatgtcatttcatatttataaactacttcaaccgctaattttac 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 13438391 - 13438329
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  13438391 tttttatgtcattttatatttataagttagtttaaccgctaatttaaccaaacactacaaatt 13438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 43911172 - 43911074
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 231  Q
    |||||||  |||||||| |||||||  |||||||||| || ||||||||||| |||||||||||||||| |||| | ||| ||||  |||||| |||||    
T  43911172 tttttatatcatttcatgtttataagttagttcaaccactgattttaccaaatactacaaattcaatcatctagctaatctactacaagctatcaatta 43911074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 3837090 - 3837143
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    |||| ||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  3837090 cattacatatttataagctacttcaacggctaattttaccaaacactacaaatt 3837143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 19683518 - 19683449
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||| || |||||||||||||| |  || ||||||||||| ||||| ||||||||||||||||||||||    
T  19683518 tttttttgtcatttcatatttattagttacttcaaccgctatttttatcaaacactacaaattcaatcaa 19683449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 28039923 - 28039854
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||||  |||| |||||||||| ||| ||||||| ||||||||| |||||||||||||| |||||||    
T  28039923 tttttatgtaattttatatttataacctacttcaacctctaattttatcaaacactacaaatgcaatcaa 28039854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 19087403 - 19087471
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| |||||||||||| |||| || |||||||| |||||||| |||| |||| |||||||||||    
T  19087403 tttttatgtcatttcatatttttaaattaattcaaccgttaattttatcaaatactataaattcaatca 19087471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 11991506 - 11991455
Alignment:
Q  148 atatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||||||| |||||| || ||||||| |||||||||||||||||||    
T  11991506 atatttataaactatttcaacggcgaattttatcaaacactacaaattcaat 11991455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 31627636 - 31627690
Alignment:
Q  144 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    ||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||    
T  31627636 tttcatatttataagttagttcaacggttaattttatcaaacactacaaattcaa 31627690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 21578038 - 21578103
Alignment:
Q  174 attttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatca 239  Q
    |||||| |||| ||||||||||||| ||| ||| ||||| | |||||||||||||||| |||||||    
T  21578038 attttaacaaagactacaaattcaaccaattaggttatccattattagctataaattaacttatca 21578103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 28543588 - 28543536
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| || |||||    
T  28543588 atttcatatttataaactatttcaatcactaattttaccaaacaatataaatt 28543536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 883879 - 883930
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 184  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||| ||||    
T  883879 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 1243208 - 1243259
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 184  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||| ||||    
T  1243208 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 1243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 7379541 - 7379659
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 223  Q
    ||||||| | ||||||| ||||| ||||||||||  || ||||| || ||||||||||||||| | |||| ||||||| |||  ||||| ||||| | ||    
T  7379541 aatatatcaattttatgtcattttatatttataagttaattcaatcg-taattttaccaaacattgcaaactcaatcagctaacttatccactatcatct 7379639  T
Q  224 ataaattagcttatcagcta 243  Q
    ||||  ||| ||||||||||    
T  7379640 ataagctagtttatcagcta 7379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 26769318 - 26769393
Alignment:
Q  130 ttatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||||||  ||||||||||| ||||| | | |||| | |||||||| |||||| |||||| |||||||||||    
T  26769318 ttatttttatgtaatttcatatttgtaaaccaatccaacagttaattttatcaaacattacaaaatcaatcaacta 26769393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 29234852 - 29234891
Alignment:
Q  173 aattttaccaaacactacaaattcaatcaactagattatc 212  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  29234852 aattttatcaaacactacaaattcaatcaactagcttatc 29234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 45672999 - 45673054
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||||| ||||| | ||||||||  |||||| ||||||||||||||||||||||    
T  45672999 tttttatgtcattttacatttataagttagttctaccgctaattttaccaaacact 45673054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 482461 - 482407
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  482461 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 482407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 30339359 - 30339325
Alignment:
Q  166 aaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||| |||||||||||||||||||||||||||||    
T  30339359 aaccgataattttaccaaacactacaaattcaatc 30339325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 36112732 - 36112678
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 187  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||  |||||||||    
T  36112732 tttttatgtcatttcatatttataagctagttcaacaactaattgcaccaaacac 36112678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 42967783 - 42967850
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattg 113  Q
    |||||||||||||||||| |  || ||||||||| ||||||||  |||||||||| ||||||| ||||||    
T  42967783 ataagctaattcaagtagct--taaagcttatcactatttattcaaattttacccatgtattcttaattg 42967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 43135093 - 43135147
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  43135093 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 43135147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 44235370 - 44235316
Alignment:
Q  147 catatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||| ||| |||||| | ||| |||||||||||||||||||| |||||    
T  44235370 catatttataagctacttcaacggttaactttaccaaacactacaaattaaatca 44235316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 44597295 - 44597349
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  44597295 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 44597349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 21375299 - 21375352
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  21375299 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 21375352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 21561561 - 21561524
Alignment:
Q  147 catatttataaactagttcaaccgctaattttaccaaa 184  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  21561561 catatttagaaactaattcaaccgctaattttaccaaa 21561524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 24171477 - 24171530
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| |||||||| | |||||| |||| ||||||||||||||||||    
T  24171477 tttatgtcattttatatttatcagctagttgaaccactaattttaccaaacact 24171530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 25129872 - 25129807
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||||| | ||||||||| |||||| |||||||   | | ||||||||||||||||||||||||||    
T  25129872 tttttacgtcatttcatagttataacctagttcggtcacaaattttaccaaacactacaaattcaa 25129807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 33027535 - 33027588
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  33027535 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 33027588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 36122041 - 36122118
Alignment:
Q  148 atatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 225  Q
    |||||||| ||||| |||||| |||||||||||||||||||  || || ||| |||||| || ||| |||| ||||||    
T  36122041 atatttatcaactacttcaacagctaattttaccaaacactttaattttaataaactagtttttcagctataagctat 36122118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 42967875 - 42967928
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattt 177  Q
    |||||||||| |||||| |||||||||||||||| ||||| |||  ||||||||    
T  42967875 aatatattatctttatgtcatttcatatttataagctagtacaatggctaattt 42967928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 45221562 - 45221509
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  45221562 tttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 45221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 45352898 - 45352962
Alignment:
Q  137 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||| ||||| |||||||| |  ||| |||||||||||||||  | |||||||||||||||||||    
T  45352898 tatgtcatttgatatttatgagttagctcaaccgctaattttgtcgaacactacaaattcaatca 45352962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 29052692 - 29052773
Alignment:
Q  131 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||||| |||||||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||| |||| |||||    
T  29052692 tatttttatgtcatttcatatttataagctaggtgaaccgcttattttaccaaacactgcaaattcaatcagctagcttatc 29052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 9749888 - 9749801
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||||||||||| |||  | |||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||| |||| ||||    
T  9749888 aatatattattttcatgttacttcatatttatacactacttcaaccactaattttaccaaacactacaaattaaatcagctagcttat 9749801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 34544421 - 34544486
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 198  Q
    |||||||| |||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||    
T  34544421 tttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaattcaa 34544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 3341286 - 3341346
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||| ||||||    
T  3341286 catttcatatttatagactatttcaaccgctaattttatcaaacactataaattaaatcaa 3341346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 2748348 - 2748289
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||  |||||||||||    
T  2748348 catttcatatttataaactagttcaaccgttaattttattaaacactgtaaattcaatca 2748289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 8014485 - 8014427
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    |||||||| ||||||| ||||||| || |||||||||||||||||||| ||||||||||    
T  8014485 catttcatgtttataagctagttcgactgctaattttaccaaacactataaattcaatc 8014427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 13692520 - 13692621
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagct 234  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||| |||| ||||| ||||| |||| |||  ||||| ||||| | |||||||||| ||    
T  13692520 tttatgtcatttcatatttattaactacttcaaccactaattttatcaaatactac-aattctatcagctaacttatctactatcaactataaattaact 13692618  T
Q  235 tat 237  Q
    |||    
T  13692619 tat 13692621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 25142326 - 25142248
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||| | ||||||  ||||||||||||||||| ||||||||||  |||||||| |||| | |||||||||||||||    
T  25142326 aatatatcacttttatatcatttcatatttataaaatagttcaaccattaattttatcaaatattacaaattcaatcaa 25142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 1288436 - 1288501
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||| ||||||||||||||||  || |||||||| |||||||| ||||||||||||| |||||    
T  1288436 ttttatgtcatttcatatttataagttatttcaaccgttaattttatcaaacactacaaaatcaat 1288501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 2255918 - 2255971
Alignment:
Q  152 ttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||| ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  2255918 ttataagctagttcaaccactaattttattaaacactacaaattcaatcaacta 2255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 29490215 - 29490276
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaac 185  Q
    ||||||||||||||||  ||||||||||||||||| || |||||||  ||||||||||||||    
T  29490215 aatatattatttttatatcatttcatatttataaattacttcaaccattaattttaccaaac 29490276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 724711 - 724767
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||| |||||||||| ||| ||||||| ||||||||| |||||||||||||||||||    
T  724711 attttatatttataagctacttcaaccactaattttatcaaacactacaaattcaat 724767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 4912509 - 4912551
Alignment:
Q  160 tagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  4912509 tagttcaaccactaattttaccaaaaactacaaattcaatcaa 4912551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 9750320 - 9750382
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaatt-ttaccaaacactacaaat 194  Q
    ||||||||  ||||||||||||||| |||||||||| ||||||| |||||||| |||||||||    
T  9750320 tttttatgtgatttcatatttataagctagttcaacagctaattcttaccaaatactacaaat 9750382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 27720111 - 27720057
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||    
T  27720111 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 27720057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 34431392 - 34431457
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||| ||| ||||||||||||| |||||||||||||   ||||||| ||||||||||||||||||||    
T  34431392 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 34431457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 9195637 - 9195700
Alignment:
Q  132 atttttatgccatttcatatttataaactagttcaa-ccgctaattttaccaaacactacaaat 194  Q
    ||||||||| |||||||||||||||| | ||||||| ||  ||||||||||||||||| |||||    
T  9195637 atttttatgtcatttcatatttataagcgagttcaatcctttaattttaccaaacactgcaaat 9195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 5301070 - 5301016
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||||||||| | ||||||||   |||| |||||||||||||||||||||||    
T  5301070 ttttatgccattttacatttataagtcagttgaaccgctaattttaccaaacact 5301016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 11016298 - 11016352
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  11016298 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 11016352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 28077133 - 28077187
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  28077133 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 28077187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 14227077 - 14227024
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||||||||| | |||||| | |||||| |||||||| ||||||||||||||    
T  14227077 tttatgccattttacatttatcagctagttgaaccgctatttttaccaaacact 14227024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 9749956 - 9749924
Alignment:
Q  66 tatagcttatcattatttatttcaattttaccc 98  Q
    |||||||||||||||||||| ||||||||||||    
T  9749956 tatagcttatcattatttatctcaattttaccc 9749924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 32662298 - 32662366
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||| ||| ||||||||||||||||  |||||||| |||||||| |||  ||||||| || ||||||||    
T  32662298 ttttcatgtcatttcatatttataagttagttcaatcgctaattgtacttaacactagaagttcaatca 32662366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 27679222 - 27679289
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaat 194  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  27679222 atattttttttatgtcatttcatatttataagctagttcaaccgctaattttaccagacactataaat 27679289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 42139531 - 42139614
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 225  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  | ||||||||||  |||| ||||||    
T  42139531 catttcatatttataagctagttcaactgctaattttaccaaacactacaaattgaacaagctagattatccgctatcagctat 42139614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 15967970 - 15968023
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 195  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  15967970 catttcatatttataagctagttcaaccgctaattttaccaagcactacaaatt 15968023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 30804437 - 30804380
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30804437 catttcatacttataatctagttcaaccgctaattttacgaaacactacaaattcaat 30804380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 31063099 - 31063200
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagctt 235  Q
    ||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||   ||| |||||  |||| ||||||||| ||| ||    
T  31063099 ttatgtcatttcatatttataaattacttcaaccgctaatcttatcaaacactacaaattcaatctgttagtttatccgctatcagctataaactagttt 31063198  T
Q  236 at 237  Q
    ||    
T  31063199 at 31063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 1660283 - 1660221
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||||||||||||| |||||||||  |||||  |||||||||||||||||||||||||||    
T  1660283 atttcatatttataaacaagttcaacccttaattccaccaaacactacaaattcaatcaacta 1660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 13463510 - 13463612
Alignment:
Q  122 tcaatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattag 221  Q
    ||||||||| | ||||||||||||||||||||||||  |||| ||||   ||||||||| ||| | || |||||||||||||||| ||||| ||||| ||    
T  13463510 tcaatatatcacttttatgccatttcatatttataatatagtccaactattaattttactaaataatataaattcaatcaactagcttatccactatcag 13463609  T
Q  222 cta 224  Q
    |||    
T  13463610 cta 13463612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 21721917 - 21721981
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 197  Q
    |||||||| ||||| |||||||||| ||| |||||| |||||||||||||||| |||||||||||    
T  21721917 tttttatgtcattttatatttataagctatttcaactgctaattttaccaaactctacaaattca 21721981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 21938036 - 21938108
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    |||||||| ||||| ||||||||||  || |||||||| ||||||||| ||||||| ||||||||||||||||    
T  21938036 tttttatgtcattttatatttataagatatttcaaccgttaattttactaaacactgcaaattcaatcaacta 21938108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 4548994 - 4549057
Alignment:
Q  136 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    ||||| |||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||    
T  4548994 ttatgtcatttcatatttataaaccagtccgaccgccaattttaccaaacaatacaaattcaat 4549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 18491955 - 18492037
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    |||||||  |||||||| ||||||||||| ||||  ||||||||| |||||||||| |||||| || ||||| ||||||||||    
T  18491955 aatatatcttttttatgtcatttcatattaataagttagttcaactgctaattttatcaaacattataaatttaatcaactag 18492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 27863867 - 27863945
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 211  Q
    ||||| || ||||||| |||||||| |||  ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  27863867 tttttttgtcatttcacatttataagctacctcaaccggtaattttatcaaacactacaaattcaatcagctaaattat 27863945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 28249900 - 28249822
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 202  Q
    ||||||| ||||||||| ||||||||||||||||  ||| ||||||  ||||||||| | |||||||||||| ||||||    
T  28249900 aatatataatttttatgtcatttcatatttataagttagatcaaccattaattttactacacactacaaatttaatcaa 28249822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 15804446 - 15804500
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccctt 100  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||    
T  15804446 ataagctaattcaagtagcttata--gcttatcattatttatctcaattttaccctt 15804500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 8752600 - 8752699
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctata 226  Q
    |||| ||||||||| |||||||||||||||| ||| |||||  ||  ||||||||||| |||||||||||||| |  ||| |||||||||||  ||||||    
T  8752600 atatcatttttatgtcatttcatatttataagctaattcaaatgcagattttaccaaa-actacaaattcaattagttagcttatcaactatctgctata 8752698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 15804508 - 15804576
Alignment:
Q  172 taattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcag 240  Q
    ||||||||||||||| |||||||||||||| |||| ||||| ||||| ||||| || | ||||||||||    
T  15804508 taattttaccaaacattacaaattcaatcagctagtttatccactatcagctacaagtcagcttatcag 15804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 2346912 - 2346865
Alignment:
Q  154 ataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  2346912 ataaactagttcaaccgttaattttaccaaacattacaaatccaatca 2346865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 40910051 - 40910148
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaatt---ttaccaaacactacaaattcaatcaactagattatcaactattagctataa 227  Q
    |||||||| ||||||||||||||||  || || |||||||||||   |||| |||||||||||||| ||||  |||| ||||| ||||| ||||||||    
T  40910051 tttttatgtcatttcatatttataaggtactttaaccgctaattttattacaaaacactacaaattgaatctgctagcttatccactatcagctataa 40910148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 44984268 - 44984171
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaatt---ttaccaaacactacaaattcaatcaactagattatcaactattagctataa 227  Q
    |||||||| ||||||||||||||||  || || |||||||||||   |||| |||||||||||||| ||||  |||| ||||| ||||| ||||||||    
T  44984268 tttttatgtcatttcatatttataaggtactttaaccgctaattttattacaaaacactacaaattgaatctgctagcttatccactatcagctataa 44984171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 12238298 - 12238220
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||||  ||||||||| |||||  || || ||| ||||||||||| ||||||||||||||||||||| ||| |||||    
T  12238298 ttttatgttatttcatatatataagttaatttaactgctaattttacaaaacactacaaattcaatcaattagcttatc 12238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 17487917 - 17487871
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaatttta 179  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||    
T  17487917 tttttatgtcatttcatatttataaaccatttcaaccgctaatttta 17487871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 33625693 - 33625771
Alignment:
Q  142 catttcatatttataaa-ctagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 219  Q
    ||||||||||||||||| ||| ||||  |||||||| ||||||||||||||||||||| || |||| || ||| |||||    
T  33625693 catttcatatttataaagctaattcagtcgctaattataccaaacactacaaattcaaccagctagcttgtcagctatt 33625771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 42034570 - 42034623
Alignment:
Q  171 ctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 225  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||    
T  42034570 ctaattttaccaaacaccacaaattcaatcaactag-ttatccactatcagctat 42034623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 6176501 - 6176578
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 212  Q
    |||||| ||||| ||| |||| ||||| ||||| ||||||||||| ||||||||| ||||||||| || | |||||||    
T  6176501 tttatgtcattttatacttatcaactaattcaatcgctaattttaacaaacactagaaattcaattaaattgattatc 6176578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 42034457 - 42034511
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccctt 100  Q
    |||||||||||||||||| |||||  ||||||||||| |||| ||||||||||||||    
T  42034457 ataagctaattcaagtagattata--gcttatcattacttatctcaattttaccctt 42034511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 42139427 - 42139477
Alignment:
Q  46 aagctaattcaagtagtttatatagcttatcattatttatttcaattttaccc 98  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  42139427 aagctaattcaagtagattata--gcttatcattatttatctcaattttaccc 42139477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 4751783 - 4751874
Alignment:
Q  133 tttttatgccatttcatatttataaacta------gttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 218  Q
    |||||||| |||||||||||||||| |||      ||||||| | ||| |||||||||||||||||||||||||  || |||||||| ||||    
T  4751783 tttttatgtcatttcatatttataagctaagcctagttcaacagttaactttaccaaacactacaaattcaatcggctggattatcagctat 4751874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 6472188 - 6472112
Alignment:
Q  124 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    ||||||| ||||||| | |||||||||||||| |  |||||||| |  ||||||||||||| || ||||||||||||    
T  6472188 aatatatcatttttaggtcatttcatatttattatttagttcaatcattaattttaccaaaaaccacaaattcaatc 6472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 9613749 - 9613821
Alignment:
Q  127 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 199  Q
    |||||||||| ||| ||||||||||||||||  ||||||| ||  | ||||||||||||| || |||||||||    
T  9613749 atattattttcatgtcatttcatatttataagatagttcagccattgattttaccaaacaatataaattcaat 9613821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 33651226 - 33651167
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||||||| |||  ||||||||| ||||||||||| ||| |||||||||| |||||    
T  33651226 catttcatatttgtaagttagttcaactgctaattttactaaaaactacaaattaaatca 33651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 7510883 - 7510829
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |||||||| | |||||| |||||||||||||| ||||||||    
T  7510883 ttttatgtcattttatatttatcagctagttgaaccgctaattttatcaaacact 7510829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 38843476 - 38843530
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  38843476 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 38843530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 38880241 - 38880187
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  38880241 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 38880187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 44276424 - 44276478
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  44276424 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 44276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 44810208 - 44810305
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcag 240  Q
    |||| |||| |||||| |||||||| |||||| ||||||||||  ||||||||||||||| |||| |||||  || | | ||||||  |||||||||||    
T  44810208 cattgcatacttataagctagttca-ccgctagttttaccaaatgctacaaattcaatcagctagcttatccgctgtcatctataagatagcttatcag 44810305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 2759507 - 2759560
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 186  Q
    |||||||| ||||| | |||||| | |||||| |||||||||||||||||||||    
T  2759507 tttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaaca 2759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 9263804 - 9263751
Alignment:
Q  135 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  9263804 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 9263751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 11235756 - 11235695
Alignment:
Q  128 tattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacacta 189  Q
    ||||||||||  | ||||||||||| ||||||||||||||  | ||||||||||||| ||||    
T  11235756 tattattttttcgtcatttcatattcataaactagttcaatagataattttaccaaatacta 11235695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 27679148 - 27679185
Alignment:
Q  66 tatagcttatcattatttatttcaattttacccttgta 103  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  27679148 tatagcttatcattatttatctcaattttacccatgta 27679185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 36514644 - 36514689
Alignment:
Q  160 tagttcaaccgctaattttaccaaacactacaaattcaatcaacta 205  Q
    ||||||||||  ||||||||  ||||||||||||||||||||||||    
T  36514644 tagttcaaccattaattttatgaaacactacaaattcaatcaacta 36514689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 5946638 - 5946570
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||||||| ||||||||||||| || ||| ||||||  ||||||| || || ||||||| |||||||||    
T  5946638 tttttatgtcatttcatatttacaagctacttcaacaactaatttgactaagcactacatattcaatca 5946570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 14477662 - 14477590
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 206  Q
    ||||||| ||||||||||||||||  | ||||||||| |  |||||| ||||||| |||||| ||| ||||||    
T  14477662 ttttatgtcatttcatatttataagtttgttcaaccgttcgttttactaaacactgcaaatttaataaactag 14477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 18030310 - 18030354
Alignment:
Q  143 atttcatatttataaactagttcaaccgctaattttaccaaacac 187  Q
    ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  18030310 atttcatgtttataagctagtttaaccgctaactttaccaaacac 18030354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 31854810 - 31854878
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 201  Q
    |||| ||| |||||||||||||||||||||||||||   | ||||||||||| ||| |  |||||||||    
T  31854810 ttttcatgtcatttcatatttataaactagttcaacaatttattttaccaaagactgcgcattcaatca 31854878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 40909954 - 40910007
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccct 99  Q
    ||||||||||||||||||||  ||||| |||||| | ||||| |||||||||||||    
T  40909954 ataagctaattcaagtagtt--tataggttatcactttttatctcaattttaccct 40910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 44810100 - 44810157
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 103  Q
    |||||||||||||||||| ||||||   ||| |||| ||||| |||||||||||||||||    
T  44810100 ataagctaattcaagtagcttatat--gttaccattttttatctcaattttacccttgta 44810157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 49838 - 49744
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataa 227  Q
    |||| ||| |||||||||||||| |||||  ||| || |||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||||||    
T  49838 ttttcatgtcatttcatatttatcaactaagtcagccactaattttaccaaatactacaaatccaatcaactagtttatccactatgagctataa 49744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 49935 - 49868
Alignment:
Q  44 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattg 113  Q
    |||||||||||||||||| |||||  |||||||| | ||||| ||||||||||||||| | || ||||||    
T  49935 ataagctaattcaagtagcttata--gcttatcactttttatctcaattttacccttgcaatcttaattg 49868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 338976 - 338908
Alignment:
Q  142 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagatta 210  Q
    ||||| |||||||||| ||| |||||||||||| | || ||||||||||||||||||||| ||||||||    
T  338976 cattttatatttataagctacttcaaccgctaactatatcaaacactacaaattcaatcagctagatta 338908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 237843 - 237893
Alignment:
Q  150 atttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 200  Q
    |||||| || ||||||||||| ||||||||||||||||| ||||| |||||    
T  237843 atttatcaattagttcaaccgttaattttaccaaacacttcaaatccaatc 237893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 9533 - 9479
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||    
T  9533 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 8074 - 8179
Alignment:
Q  133 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 232  Q
    |||||||| |||||||||||| |||  |||| ||||  ||||||||| |||||||||||||||||||||| ||  ||||| | ||| | || |||| |||    
T  8074 tttttatgtcatttcatattt-taaggtagtgcaacaactaattttatcaaacactacaaattcaatcaattaacttatccattatcaactgtaaaatag 8172  T
Q  233 cttatca 239  Q
    |||||||    
T  8173 cttatca 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 192721 - 192775
Alignment:
Q  134 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 188  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  192721 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 192775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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