View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_16 (Length: 556)
Name: NF0816_low_16
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 29 - 555
Target Start/End: Complemental strand, 34364939 - 34364417
Alignment:
| Q |
29 |
aaagaatgcagtacaaaacttcagagacaaattcaaatccaaacttcatatagtagattgtctacaaagagttaattcatctttcactgatgaagaattt |
128 |
Q |
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| T |
34364939 |
aaagaatgcagtacaaaacttcagagacaaattcaaatccaaacttcatatagtagattgtctacaaagagttaattcacctttcactgatgaagaattt |
34364840 |
T |
|
| Q |
129 |
aacattaattcttttatcagcatctcaaatgcaaatggtccacttaacacaagagaagattacgttaaatggatgctagtgacacaaaatcaagcataac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34364839 |
aacattaattcttttatcagcatctcaaatgcaaatggtccacttaacacaagagaagattacgttaaatggatgctagtgacacaaaatcaagcataac |
34364740 |
T |
|
| Q |
229 |
atacagtacaaagacacaacttaaatagtaagtaatcatctgtgtgacaatatcttttttcccttcagctgaactaaaacagtatttcaatagtataagc |
328 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34364739 |
at----tacaaagacacaacttaaatagtaagtaatcatctgtgtgacaatatgttttttcccttcagctgaactaaaacagtatttcaatagtataagc |
34364644 |
T |
|
| Q |
329 |
gacacttcggatagaagccatgcgtggtgtccaaatatgtaccgatatcaaatagcgatacatgtgattgcattcagttaactcattttttcaaaatgtt |
428 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34364643 |
gacacttcggatagaaggcatgtgtggtgtccaaatatgtaccgatatcaaatagcgatacatgtgattacattcagttaactcattttttcaaaatgtt |
34364544 |
T |
|
| Q |
429 |
aattcgtgtaatgttagtgccatgtttggtgttcatgtctttgtgagtgctctaattttatctccctgtttccaattcttccgcgcgccttgttcctttt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34364543 |
aattcgtgtaatgttagtgccatgtttggtgttcatgtctttgtgagtgctctaattttatctccctgtttccaattcttccgcgcaccttgttcctttt |
34364444 |
T |
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| Q |
529 |
ctatcacaccagctagaggtgtctgtg |
555 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
34364443 |
ctatcacaccagctagaggtgtttgtg |
34364417 |
T |
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