View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_17 (Length: 535)
Name: NF0816_low_17
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 30 - 524
Target Start/End: Original strand, 36110706 - 36111196
Alignment:
| Q |
30 |
aaacagagatatgggctacactacattgagatgagacaaattatgtagaaacaacaagtgacattgacttaggaagaggatgaatgaacgaggaaatcgc |
129 |
Q |
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| T |
36110706 |
aaacagagatatgggctacactacattgagatgagacaaattatgtagaaacaacaagtgacattgacttaggaagaggatgaatgaacgagaaaatcgc |
36110805 |
T |
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| Q |
130 |
tggcaccgcgtggctatttgtgtgcaaaaccatgtcaatatatgttttttgtgtggcttttatgtgtggaagaacatgcatccaaccacgtggaatgtcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36110806 |
tggcaccgcgtggctatttgtgtgcaaaaccatgtcaatatatgttttttgtgtggcttttatgtgtggaagaacatgcatccaaccacgtggaatgtcg |
36110905 |
T |
|
| Q |
230 |
tgtgttacgtgcacaagacaaccgtggggctttgttgtagccactagcttgtgagtattgagagtgagatcggtcacccttcattttcagcttctgatta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36110906 |
tgtgttacgtgcacaagacaaccgtggggctttgttgtagccactagcttgtgagtattgagagtgagatcggtcacccttcattttcagcttctgatta |
36111005 |
T |
|
| Q |
330 |
tttagaaacgcaattgcatcgacacaaacacacatgatacgacacggaca-----atgctgacatcgttcataatttgagaaaattagataatttgatgt |
424 |
Q |
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| T |
36111006 |
tttagaaacg---------cgacacagacacacaggatacgacacggacatcagcatactgacatcattcataatttgagaaaatcaagtaatttgatgt |
36111096 |
T |
|
| Q |
425 |
aattataggtatcatatcgatgtcgagacacgcctaatctaaagagtgttcttg-ttcatatgttctgtctaatttgactttggatattgctatgtttca |
523 |
Q |
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| T |
36111097 |
aattatagatattatattggtgtcgagacacgcctaatctaaagagtgttcttgtttcatatgttctgtctaa-ttgactttggatattgctatgtttca |
36111195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 32724157 - 32724111
Alignment:
| Q |
385 |
gacatcgttcataatttgagaaaattagataatttgatgtaattata |
431 |
Q |
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||||||||| ||||||||||||| ||| ||||||| ||||||||||| |
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| T |
32724157 |
gacatcgttaataatttgagaaatttacataatttaatgtaattata |
32724111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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