View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_18 (Length: 527)

Name: NF0816_low_18
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_18
NF0816_low_18
[»] chr8 (6 HSPs)
chr8 (143-379)||(5662606-5662842)
chr8 (13-70)||(5662913-5662970)
chr8 (279-379)||(27541539-27541639)
chr8 (279-333)||(14678001-14678055)
chr8 (279-379)||(5657811-5657912)
chr8 (279-333)||(31100852-31100906)
[»] chr5 (6 HSPs)
chr5 (254-379)||(22004412-22004537)
chr5 (279-380)||(22009508-22009610)
chr5 (279-378)||(9043843-9043943)
chr5 (279-378)||(30442527-30442627)
chr5 (279-378)||(7473469-7473569)
chr5 (255-374)||(30463006-30463126)
[»] chr2 (7 HSPs)
chr2 (266-378)||(24454556-24454668)
chr2 (279-378)||(23348960-23349060)
chr2 (279-333)||(12741775-12741829)
chr2 (279-332)||(18355293-18355346)
chr2 (281-357)||(997882-997958)
chr2 (279-333)||(10328871-10328926)
chr2 (283-332)||(1615899-1615948)
[»] scaffold0003 (2 HSPs)
scaffold0003 (147-254)||(36796-36903)
scaffold0003 (143-254)||(42974-43087)
[»] chr3 (18 HSPs)
chr3 (143-254)||(31688029-31688140)
chr3 (143-254)||(31896727-31896838)
chr3 (143-254)||(31912436-31912547)
chr3 (143-254)||(31946084-31946195)
chr3 (295-379)||(47763911-47763995)
chr3 (260-379)||(12538597-12538716)
chr3 (254-333)||(24761853-24761932)
chr3 (281-379)||(17681807-17681905)
chr3 (255-333)||(24816002-24816080)
chr3 (260-333)||(53027713-53027786)
chr3 (279-378)||(53973266-53973366)
chr3 (254-333)||(53352716-53352795)
chr3 (279-333)||(19882091-19882145)
chr3 (279-379)||(2549977-2550077)
chr3 (279-378)||(37982390-37982490)
chr3 (320-372)||(53351956-53352008)
chr3 (279-326)||(31685171-31685218)
chr3 (13-42)||(52131183-52131212)
[»] scaffold0096 (1 HSPs)
scaffold0096 (260-379)||(27450-27569)
[»] chr6 (4 HSPs)
chr6 (143-254)||(27444274-27444387)
chr6 (279-379)||(33045411-33045512)
chr6 (253-333)||(8976491-8976571)
chr6 (310-379)||(3065738-3065807)
[»] chr7 (6 HSPs)
chr7 (13-66)||(11649352-11649405)
chr7 (279-378)||(43071362-43071462)
chr7 (279-333)||(1262175-1262229)
chr7 (279-327)||(48849787-48849835)
chr7 (143-191)||(11649475-11649523)
chr7 (279-327)||(26909961-26910009)
[»] scaffold0596 (1 HSPs)
scaffold0596 (279-333)||(741-795)
[»] scaffold0045 (1 HSPs)
scaffold0045 (279-333)||(11614-11668)
[»] scaffold0035 (1 HSPs)
scaffold0035 (279-327)||(35156-35204)
[»] chr4 (1 HSPs)
chr4 (279-333)||(29863341-29863395)
[»] chr1 (2 HSPs)
chr1 (188-254)||(7608113-7608179)
chr1 (188-254)||(31771101-31771167)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 143 - 379
Target Start/End: Complemental strand, 5662842 - 5662606
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5662842 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttga 5662743  T
Q  243 atttgaattgtggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662742 atttgaattgtggcatggggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg 5662643  T
Q  343 attggcgcctaaaaaatctaggtttagggtttgcaaa 379  Q
    |||||||||||||||||||||||||||||||||||||    
T  5662642 attggcgcctaaaaaatctaggtttagggtttgcaaa 5662606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 5662970 - 5662913
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcg 70  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5662970 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcg 5662913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 27541539 - 27541639
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaa 378  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    ||||| |||| ||| ||   || ||||||||||||||||||    
T  27541539 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaa 27541638  T
Q  379 a 379  Q
    |    
T  27541639 a 27541639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 14678001 - 14678055
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  14678001 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 14678055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 5657912 - 5657811
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  5657912 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgca 5657813  T
Q  378 aa 379  Q
    ||    
T  5657812 aa 5657811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 31100852 - 31100906
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||  |||| || ||||||||||||||| |||||    
T  31100852 tcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacgg 31100906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 22004412 - 22004537
Alignment:
Q  254 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 353  Q
    ||||||||||||||||| || ||||| | |||| |||||||||||| ||||||||  ||||||||||||||||| |||||||| ||||||||||||||||    
T  22004412 ggcatggggaaatgaaactttgaagtgacattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgccta 22004511  T
Q  354 aaaaatctaggtttagggtttgcaaa 379  Q
    ||  ||||||||||||||||||||||    
T  22004512 aactatctaggtttagggtttgcaaa 22004537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 22009508 - 22009610
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  22009508 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 22009607  T
Q  378 aat 380  Q
    |||    
T  22009608 aat 22009610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Complemental strand, 9043943 - 9043843
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  9043943 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 9043844  T
Q  378 a 378  Q
    |    
T  9043843 a 9043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 30442527 - 30442627
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  30442527 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 30442626  T
Q  378 a 378  Q
    |    
T  30442627 a 30442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 7473469 - 7473569
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  7473469 tcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 7473568  T
Q  378 a 378  Q
    |    
T  7473569 a 7473569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 374
Target Start/End: Original strand, 30463006 - 30463126
Alignment:
Q  255 gcatggggaaa-tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 353  Q
    ||||||||||| |||||||   |||||| || | ||||||||||||||||||||| |||| |  | ||  |||| |||||  |||||| ||||||||| |    
T  30463006 gcatggggaaactgaaagtgccaagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgccca 30463105  T
Q  354 aaaaatctaggtttagggttt 374  Q
    |||   |||||||||||||||    
T  30463106 aaatggctaggtttagggttt 30463126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 266 - 378
Target Start/End: Complemental strand, 24454668 - 24454556
Alignment:
Q  266 tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggt 365  Q
    |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  24454668 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggt 24454569  T
Q  366 ttagggtttgcaa 378  Q
    ||||| |||||||    
T  24454568 ttaggatttgcaa 24454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 23348960 - 23349060
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  23348960 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 23349059  T
Q  378 a 378  Q
    |    
T  23349060 a 23349060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 12741829 - 12741775
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  12741829 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 18355293 - 18355346
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacg 332  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| ||||    
T  18355293 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacg 18355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 997958 - 997882
Alignment:
Q  281 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 357  Q
    |||||| || |||||||||||||||||| ||| || |||||  |||| ||||| | ||||| |||||||||||||||    
T  997958 agattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 10328871 - 10328926
Alignment:
Q  279 tcagattaaatcaaa-ggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||||||| |||||    
T  10328871 tcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 10328926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 1615899 - 1615948
Alignment:
Q  283 attaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacg 332  Q
    |||| |||||||||||||||| |||| ||||||||||||| |||| ||||    
T  1615899 attagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacg 1615948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 36796 - 36903
Alignment:
Q  147 gtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaattt 246  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||    
T  36796 gtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataacattaattatttgtcatttacaatgcactgtaaacttgaattt 36895  T
Q  247 gaattgtg 254  Q
    ||||||||    
T  36896 gaattgtg 36903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 42974 - 43087
Alignment:
Q  143 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtc-atttacaatgcacggtaaactt 240  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||| | |||||| ||||||||||||| ||||||||    
T  42974 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaactt 43073  T
Q  241 taatttgaattgtg 254  Q
     |||||||||||||    
T  43074 gaatttgaattgtg 43087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 31688140 - 31688029
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 242  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31688140 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaattatttgtcatttacaatgcaccgtaaacttga 31688041  T
Q  243 atttgaattgtg 254  Q
    ||||||||||||    
T  31688040 atttgaattgtg 31688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 31896727 - 31896838
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 242  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31896727 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttga 31896826  T
Q  243 atttgaattgtg 254  Q
    ||||||||||||    
T  31896827 atttgaattgtg 31896838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 31912436 - 31912547
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 242  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31912436 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttga 31912535  T
Q  243 atttgaattgtg 254  Q
    ||||||||||||    
T  31912536 atttgaattgtg 31912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 31946084 - 31946195
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 242  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||| ||| ||||||||||||||||||| |||||||| |    
T  31946084 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattcattatttgtcatttacaatgcacagtaaacttga 31946183  T
Q  243 atttgaattgtg 254  Q
    ||||||||||||    
T  31946184 atttgaattgtg 31946195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 47763911 - 47763995
Alignment:
Q  295 gatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 379  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  47763911 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaa 47763995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 12538597 - 12538716
Alignment:
Q  260 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 359  Q
    ||||| |||||||| ||||| | |||| ||||||||||| |||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  12538597 gggaattgaaagtttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 12538696  T
Q  360 ctaggtttagggtttgcaaa 379  Q
     |||||||||||||||||||    
T  12538697 ttaggtttagggtttgcaaa 12538716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 24761853 - 24761932
Alignment:
Q  254 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  24761853 ggcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24761932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 379
Target Start/End: Complemental strand, 17681905 - 17681807
Alignment:
Q  281 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 379  Q
    |||||| |||||||||||||||| |||| || ||||||||||||||| ||||| || ||||| |||| ||| |||  || |||||||||||||||||||    
T  17681905 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaa 17681807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 24816080 - 24816002
Alignment:
Q  255 gcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  24816080 gcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 53027713 - 53027786
Alignment:
Q  260 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    ||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  53027713 gggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 53027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 53973266 - 53973366
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttga-ttggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| | || |||||||||||||||||| ||||| |  |||||| |||| ||| |||  || |||||||||||||||||    
T  53973266 tcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgca 53973365  T
Q  378 a 378  Q
    |    
T  53973366 a 53973366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 53352716 - 53352795
Alignment:
Q  254 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||||||||| |  |  ||||||||||||||||| |||||    
T  53352716 ggcatgaggaaataaaagtttgaagtcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacgg 53352795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 19882091 - 19882145
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  19882091 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 19882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 2550077 - 2549977
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  2550077 tcagattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgca 2549979  T
Q  378 aa 379  Q
    ||    
T  2549978 aa 2549977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 378
Target Start/End: Complemental strand, 37982490 - 37982390
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  37982490 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgca 37982391  T
Q  378 a 378  Q
    |    
T  37982390 a 37982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 53351956 - 53352008
Alignment:
Q  320 atgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggt 372  Q
    |||||||| |||||||| ||||||||||||||||||  |||||||||||||||    
T  53351956 atgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggt 53352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 31685218 - 31685171
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagat 326  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  31685218 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 31685171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 52131212 - 52131183
Alignment:
Q  13 gagaggaagaagtggaagaatcacgattta 42  Q
    ||||||||||||||||||||||||||||||    
T  52131212 gagaggaagaagtggaagaatcacgattta 52131183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 27569 - 27450
Alignment:
Q  260 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 359  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  27569 gggaaatgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 27470  T
Q  360 ctaggtttagggtttgcaaa 379  Q
     |||||||||||||||||||    
T  27469 ttaggtttagggtttgcaaa 27450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 27444387 - 27444274
Alignment:
Q  143 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtca-tttacaatgcacggtaaactt 240  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||| | ||||||| |||||||||||| ||||||||    
T  27444387 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaactt 27444288  T
Q  241 taatttgaattgtg 254  Q
     |||||||||||||    
T  27444287 gaatttgaattgtg 27444274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 33045411 - 33045512
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttga--ttggcgcctaaaaaatctaggtttagggtttgc 376  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| ||||| | |  |||| ||| |||  || ||||||||||||||||    
T  33045411 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg-cctcccttattttggagccaaaaccatttaggtttagggtttgc 33045509  T
Q  377 aaa 379  Q
    |||    
T  33045510 aaa 33045512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 8976571 - 8976491
Alignment:
Q  253 tggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    ||||||||||||||||||||  |   |||||||| |||||||||||||||| |||  |||| |||| |||||||| |||||    
T  8976571 tggcatggggaaatgaaagtctgcgatcagattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacgg 8976491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 3065807 - 3065738
Alignment:
Q  310 tagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaa 379  Q
    |||||||||||||||||| ||||| |  ||||| |||| ||| |||  || |||||||||||||||||||    
T  3065807 tagccaaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaa 3065738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 11649352 - 11649405
Alignment:
Q  13 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtg 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11649352 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg 11649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 43071362 - 43071462
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 377  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  43071362 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 43071461  T
Q  378 a 378  Q
    |    
T  43071462 a 43071462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 1262229 - 1262175
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  1262229 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 1262175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 48849787 - 48849835
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 327  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  48849787 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 48849835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 11649475 - 11649523
Alignment:
Q  143 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtatt 191  Q
    |||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  11649475 ttaggtcaaagccatggtttccaatgagatggatatgcaacattgtatt 11649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 26909961 - 26910009
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 327  Q
    |||||||| |||||||||||||||| |||| |||||||||||| |||||    
T  26909961 tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatc 26910009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 795 - 741
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  795 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 11614 - 11668
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||| |||||    
T  11614 tcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 35204 - 35156
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatc 327  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  35204 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 35156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 29863341 - 29863395
Alignment:
Q  279 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg 333  Q
    |||||||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  29863341 tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacgg 29863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 7608113 - 7608179
Alignment:
Q  188 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 254  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||    
T  7608113 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaacttgaacttgaattgtg 7608179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 31771101 - 31771167
Alignment:
Q  188 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 254  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||    
T  31771101 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaatttgaacttgaattgtg 31771167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6566 times since January 2019
Visitors: 5769