View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_2 (Length: 861)

Name: NF0816_low_2
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_2
NF0816_low_2
[»] chr8 (1 HSPs)
chr8 (71-861)||(30357657-30358443)


Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 71 - 861
Target Start/End: Complemental strand, 30358443 - 30357657
Alignment:
Q  71 tgagatgaagtactgatcgaatactttttaggaatctttggaaaactccaaattaaattaaatgatatgacatgtgagcacaatgcaccatagtaaaacc 170  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  30358443 tgagatgaagtactaagcgaatactttttaggaatctttcgaaaactccaaattgaattaaatgatatgacacgtgagcacaatgcaccatagtaaaacc 30358344  T
Q  171 aaaccaactaaaaattcgattctaaattctcnnnnnnnn-tcataagatagaaaaaatgatcaatatcctccaccttgtcgtaaccacccacacaaagct 269  Q
    ||||||||||||||||| |||||||||||||         |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||  |||    
T  30358343 aaaccaactaaaaattcaattctaaattctcccaaaaaaatcataagataaaaaaaatgatcaatatcctccaccttatcgcaaccacccacacatggct 30358244  T
Q  270 gtgtctcccaaaagttgaatcattaaacactaatataggttattgggttgaatgtgcagggggagtaggtgcaaagttgcacaagacttttggtacatct 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  30358243 gtgtctcccaaaagttgaatcattaaacactaatataggttattgggttgaatgtgtagggggagtagatgcaaagttgcacaagacttttgttacatct 30358144  T
Q  370 tttaccagagttctcctactgtgcgtaatgaaatttgctttggcatttacaaataaaaataaaacactaacgtacgtaggaacgtttgattttgtgtcaa 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30358143 tttaccagagttctcctactgtgcgtaatgaaatttgctttggcatttacaaat-aaaataaaacactaacgtacgtaggaacgtttgattttgtgtcaa 30358045  T
Q  470 cctatgtagttgcgctgcattttgtacatcgtactaatgcatataaataattgaatgagaacatgcaaaggaaatttcatcaagctcctgtgctgcaggc 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30358044 cctatgtagttgcgctgcattttgtacatcgtactaatgcatataaataattgaatgagaacatgcaaaggaaatttcatcaagctcctgtgctgcaggc 30357945  T
Q  570 tgtacccacaatcttttggatcccaccactgccnnnnnnnncacaagacgagacgcataacgaacatgcttaaactcataattaacatatattatattta 669  Q
    ||||||||||||||||||||| |||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30357944 tgtacccacaatcttttggat-ccaccactgcc-aaaaaaacacaagacaagacgcataacgaacatgcttaaactcataattaacatatattatattta 30357847  T
Q  670 aagatgactacgatttcgaatcaattaataaatgttgctgtacctagcttgcttaagcag-nnnnnnnnnnnnnnnngaaggatgcttaagcaggtaata 768  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                  |||||||||||||||||   ||    
T  30357846 aagatgactacgatttcgaatcaattaatacatgttgctgtacctagcttgcttaagcagttttttgtttttttttttaaggatgcttaagcagg---ta 30357750  T
Q  769 attactcgtcgttttcacaatatataggcctaagataaactgagttttcatttactatatatttttaaaataaaaataattagaagtcttttt 861  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  30357749 attactcgtcgttttcacaatatataggcctaagataacatgagttttcagttactatatatttttaaaataaaaataactagaggtcttttt 30357657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5410 times since January 2019
Visitors: 5757