View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_22 (Length: 507)
Name: NF0816_low_22
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 95 - 433
Target Start/End: Complemental strand, 43240778 - 43240440
Alignment:
| Q |
95 |
cggtgtcaatgaattcatgatcgtgtaaattacgttaatttagggtttgttagaaaaacaaagaaatcgacaaaacaatttacgatgtgatgaaattgaa |
194 |
Q |
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| T |
43240778 |
cggtgtcaatgaattcatgatcgtgtaaattacattaatttagggtttgttagaaaaacaaagaaatcgacaaaacaatttacgatgtgatgaaattgaa |
43240679 |
T |
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| Q |
195 |
ggcatcaattgttgaagaatagcatacctataattaattgtgatcagtgatgatcaaagctcaagtttccaacaatattgaaaatgcaaacctaaaaacc |
294 |
Q |
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| T |
43240678 |
gacatcaattgttgaagaatagcatacctataattaattgtgatcagtgatgatcaaagctcaagtttccaacaataatgaaaatgcaaacctaaaaacc |
43240579 |
T |
|
| Q |
295 |
gaaattagggttattagggtttgttttcgaatttttgaataataaaaggaacgaagaaatagagtaaaatagttatgggctttttatttagctattggtc |
394 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43240578 |
gaaattggggttattagggtttgttttcgaatttttgaataataaaaggaacgaagaaatagagttaaatagttatgggctttttatttagctattggtc |
43240479 |
T |
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| Q |
395 |
ccattcatttgtgaaaattgctcttctccctcgcctatg |
433 |
Q |
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| T |
43240478 |
cctttcatttgtgaaaattgctcttctccctcgcctatg |
43240440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 106 - 316
Target Start/End: Complemental strand, 43232721 - 43232510
Alignment:
| Q |
106 |
aattcatgatcgtgtaaattacgttaatttagggtttgttagaaaaacaaagaaatcgacaaaacaatttacgatgtgatgaaattgaaggcatcaattg |
205 |
Q |
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| T |
43232721 |
aattcatgatcgtgtgaattacatgaatttagggtttgttggaaaaacaaagaaatcgataaaaca-taaacgatgtgatgaaattgaaagcatcgatcg |
43232623 |
T |
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| Q |
206 |
ttgaagaatagcatacctataattaattgtgatcagtgatgatcaaa-gctcaagtttccaacaatattgaaaatgcaaacct-aaaaaccgaaattagg |
303 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||| | ||||| ||| |||||| ||||||| ||||| || |
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| T |
43232622 |
ttgaagaataacatacctataatcaattgtgatcagtgatgatcaaaggctcaggtttccaacgactttgaacatgtaaacctaaaaaaccaaaattggg |
43232523 |
T |
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| Q |
304 |
gttattagggttt |
316 |
Q |
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| T |
43232522 |
gttattagggttt |
43232510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 43240844 - 43240810
Alignment:
| Q |
29 |
aacgaattagggccaacatttgtacaattcaagac |
63 |
Q |
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| T |
43240844 |
aacgaattagggccaacatttgtgcaattcaagac |
43240810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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