View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_23 (Length: 506)
Name: NF0816_low_23
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 29 - 506
Target Start/End: Original strand, 36135867 - 36136344
Alignment:
| Q |
29 |
actgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacatcaatatt |
128 |
Q |
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| T |
36135867 |
actgctcacagaaagctttcttattgcttgtaagttctgttatggttggtgcaaccaggaaaatcacgagaagcattttgtttccaaacacatcaatatt |
36135966 |
T |
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| Q |
129 |
attgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttattt |
228 |
Q |
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| T |
36135967 |
attgattctctgcgggcaagcaacaacctggggcgtagccgcgtagcatcagtaaaggtatataactttaaaaccttcatcggaacaattctttttattt |
36136066 |
T |
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| Q |
229 |
aagatgtttctgttacatacgtgtaagnnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatga |
328 |
Q |
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| T |
36136067 |
aagatgtttctgttacatacgtgtaagaaaaaaacgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatga |
36136166 |
T |
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| Q |
329 |
tatttttccacttttgagtgtgatattttgcttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagtataagt |
428 |
Q |
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| T |
36136167 |
tatttttccacttttgagtgtgatattttgtttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagcataagt |
36136266 |
T |
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| Q |
429 |
aactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaat |
506 |
Q |
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| T |
36136267 |
aactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaat |
36136344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 41337422 - 41337737
Alignment:
| Q |
30 |
ctgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacatcaatatta |
129 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
41337422 |
ctgctcacagaaagctttcttattgcttcaaagttctgttatggttggcgcaaccagaaaaatcgagagaagcattttgtttccaaacacatcaatatta |
41337521 |
T |
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| Q |
130 |
ttgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttattta |
229 |
Q |
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| T |
41337522 |
ttgatcctctgcaggaaaacaacaacctggg--------gcatagcatcagtagaggtatttcactttaaaaccttcattgaaacaattc-ttttatcaa |
41337612 |
T |
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| Q |
230 |
agatgtttctgttacatacgtgtaag-nnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatga |
328 |
Q |
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| T |
41337613 |
agatgattctgttacatacgtgtaagaaaaagaacgttgatttgttcgctgaatatagaaggtgtatgaagtgtctacagtatattcttaagagcattga |
41337712 |
T |
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| Q |
329 |
tatttttccacttttgagtgtgata |
353 |
Q |
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| T |
41337713 |
tatttttccacttttgagtgtgata |
41337737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 41337746 - 41337843
Alignment:
| Q |
392 |
aatgtaattttgataaacaaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
489 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41337746 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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