View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0816_low_25 (Length: 491)
Name: NF0816_low_25
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0816_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 5411404 - 5411024
Alignment:
| Q |
10 |
aacaatataggtttcgtttctatgttgacactgttcggattatataattaaaaatgtgtcaattgatacattgtaatacgttttggaatgttataaataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5411404 |
aacaatataggtttcgtttctatgttgacactgttcggattatataattaaaaatgtgtcaattgatacattgtaatacgttttggaatgttataaataa |
5411305 |
T |
|
| Q |
110 |
tccggaaattttccttgaaattttagggttttcgaatcatataattcaaaaatctttaaaaagacgtttggattatataatctaaacatgagtgttttga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5411304 |
tccggaaattttccttgaaattttagggttttcgaatcatattattcaaaaatctttaaaaagacgtttggattatataatctaaacatgagtgttttga |
5411205 |
T |
|
| Q |
210 |
gaattcggtaagacacgtgagaagagagtatggtgaataaggaaattggctaacactaatgatgtttctagtgtagtttcttataagtgagagagacaga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5411204 |
gaattcggtaagacacgtgagaagagagtatggtgaaaaaggaaattggctaacactaatgatgtttctagtgtagtttcttataagtgagagagacaga |
5411105 |
T |
|
| Q |
310 |
gtgaatgtttattaaatagcactattaaaaattgtaaaaccagttatttataaattctttaatgatcgtgaatgtatatat |
390 |
Q |
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| T |
5411104 |
gtgaatgtttattaaataacactattaaaaattgtaaaaccagttatttataaattctttaatgctcgtgaatgtatatat |
5411024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 2286827 - 2286780
Alignment:
| Q |
149 |
tataattcaaaaatctttaaaaagacgtttggattatataatctaaac |
196 |
Q |
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|
| T |
2286827 |
tataattcaaaaatctctaaaaaaaagtttggattatataatccaaac |
2286780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 2423659 - 2423599
Alignment:
| Q |
136 |
ggttttcgaatcatataattcaaaaatctttaaaaagacgtttggattatataatctaaac |
196 |
Q |
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|||||| |||| |||||| |||||||| ||||||||| ||| ||||||||||||| |||| |
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| T |
2423659 |
ggtttttgaattgtataatccaaaaatccttaaaaagaagttcggattatataatccaaac |
2423599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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