View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0816_low_27 (Length: 483)

Name: NF0816_low_27
Description: NF0816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0816_low_27
NF0816_low_27
[»] chr3 (3 HSPs)
chr3 (30-398)||(43811949-43812317)
chr3 (143-216)||(27705138-27705211)
chr3 (142-211)||(39826345-39826414)
[»] chr1 (3 HSPs)
chr1 (134-334)||(9959410-9959605)
chr1 (134-334)||(32176596-32176791)
chr1 (195-348)||(35498844-35498997)
[»] chr7 (4 HSPs)
chr7 (134-334)||(12382058-12382253)
chr7 (245-348)||(39534308-39534410)
chr7 (141-218)||(24444960-24445037)
chr7 (155-218)||(3198770-3198833)
[»] scaffold0103 (1 HSPs)
scaffold0103 (153-230)||(1932-2009)
[»] chr6 (2 HSPs)
chr6 (153-230)||(2638000-2638077)
chr6 (286-334)||(18032537-18032585)
[»] chr2 (3 HSPs)
chr2 (152-269)||(25471472-25471589)
chr2 (155-218)||(27470050-27470113)
chr2 (141-218)||(37595362-37595439)
[»] chr4 (1 HSPs)
chr4 (141-216)||(3245227-3245302)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 43812317 - 43811949
Alignment:
Q  30 acttttaattcagagaaaatatcatttatatcaacatcagacaaatattcattcaactcattatggttgaaagactttaacttttgtgaattttacaaaa 129  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  43812317 acttttaattcagaggaaatatcatttatatcaacatcagacaaatatttattcaactcattatggtcgaaagactttaacttttgtaaattttacaaaa 43812218  T
Q  130 tttgaagatactttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43812217 tttgaagatactttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattaatcgactctaaatgat 43812118  T
Q  230 tctcttaatgacatattttcatgttcctcattgttctctctaaaatatatt-ttttctttctaatcacacaatgttttgttggaaatatgagatcaacgt 328  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43812117 tctcttgatgacatattttcatgttcctcattgttctctctaaaatatatttttttctttctaatcacacaatgttttgttggaaatatgagatcaacgt 43812018  T
Q  329 tcatttgaagttcaccacttcnnnnnnnnngtaagatccatactttttataaaacattcctttcgatatt 398  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  43812017 tcatttgaagttcaccactt-tttttttttgtaagatccatactttttataaaacattcctttcgatatt 43811949  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 27705211 - 27705138
Alignment:
Q  143 tcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtc 216  Q
    |||| |||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| ||| |||||    
T  27705211 tcaaatgtcttcaattcctcaaatctatctttcaaagaagtaattggcatatcaacaacaataagaaaatagtc 27705138  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 39826345 - 39826414
Alignment:
Q  142 ttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaat 211  Q
    ||||| ||||||| |||||||||||| |||||| | | |||||||| |||||| ||| ||||||||||||    
T  39826345 ttcaaatgtcttcgattcctcaaatctatttttcagaaaagtaattttcatataaacaacaataaaaaat 39826414  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 334
Target Start/End: Complemental strand, 9959605 - 9959410
Alignment:
Q  134 aagatactttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgattctc 233  Q
    |||| ||| |||| |||||||||||| ||||||| | |||| ||||||||||||| ||||||||| |||| || ||| ||||  |||||||||||||||     
T  9959605 aagacactctcaaatgtcttcaattcttcaaatctagttttcaaagaagtaattgccatatcaacaacaacaagaaaatagttaactctaaatgattctt 9959506  T
Q  234 ttaatgacatattttcatgttcctcattgttctctctaaaatatattttttctttctaatcacacaatgttttgttggaaatatgagatcaacgttcatt 333  Q
        |||    ||||||||||||||||| ||||||| ||||||||||||||     ||||||||| |||||||||| |||| ||| | ||||| ||||||    
T  9959505 ccggtgattggttttcatgttcctcattattctctccaaaatatatttttt-----taatcacacgatgttttgtttgaaagatgggctcaacattcatt 9959411  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 334
Target Start/End: Original strand, 32176596 - 32176791
Alignment:
Q  134 aagatactttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgattctc 233  Q
    |||| ||| |||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||| |||| || ||| ||||  |||||||||||||||     
T  32176596 aagacactctcaaatgtcttcaattcttcaaatctagttttcaaagaagtaattgtcatatcaacaacaacaagaaaatagttaactctaaatgattctt 32176695  T
Q  234 ttaatgacatattttcatgttcctcattgttctctctaaaatatattttttctttctaatcacacaatgttttgttggaaatatgagatcaacgttcatt 333  Q
        |||   |||||||||||||||||| ||||||| |||||||  |||||     ||||||||| | |||||||| |||| ||| | ||||| ||||||    
T  32176696 ccggtgattgattttcatgttcctcattattctctccaaaatattattttt-----taatcacacgacgttttgtttgaaagatgggctcaacattcatt 32176790  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 348
Target Start/End: Original strand, 35498844 - 35498997
Alignment:
Q  195 caacgacaataaaaaattagtcgactctaaatgattctcttaatgacata-ttttcatgttcctcattgttctctctaaaatatattttttctttctaat 293  Q
    |||| ||||||| ||| ||||||||| ||||||||||| ||  |||   | ||||||||||||||||| ||||||| ||| | | ||||||| |||||||    
T  35498844 caacaacaataagaaaatagtcgactttaaatgattcttttggtgattgatttttcatgttcctcattattctctccaaattgttttttttc-ttctaat 35498942  T
Q  294 cacacaatgttttgttggaaatatgagatcaacgttcatttgaagttcaccactt 348  Q
     | |||| ||||||||||||| ||  | ||||| ||||||| |||| || |||||    
T  35498943 taaacaaagttttgttggaaaaattggctcaacattcatttcaagtgcaacactt 35498997  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 134 - 334
Target Start/End: Complemental strand, 12382253 - 12382058
Alignment:
Q  134 aagatactttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgattctc 233  Q
    |||| ||| |||| |||||||||||| ||||||| | |||| ||||||||||||| ||||||||| |||| || ||| ||||  |||||||||||||||     
T  12382253 aagacactctcaaatgtcttcaattcttcaaatctagttttcaaagaagtaattgccatatcaacaacaacaagaaaatagttaactctaaatgattctt 12382154  T
Q  234 ttaatgacatattttcatgttcctcattgttctctctaaaatatattttttctttctaatcacacaatgttttgttggaaatatgagatcaacgttcatt 333  Q
        |||    |||||||||||||||||  |||||| ||||||||||||||     ||||||||| | |||||||| |||| ||| | ||||| ||||||    
T  12382153 cctgtgattggttttcatgttcctcattagtctctccaaaatatatttttt-----taatcacacgacgttttgtttgaaagatgggctcaacattcatt 12382059  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 39534308 - 39534410
Alignment:
Q  245 ttttcatgttcctcattgttctctctaaaatatattttttctttctaatcacacaatgttttgttggaaatatgagatcaacgttcatttgaagttcacc 344  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||  || ||||||||||| ||| | ||||| ||||||| |||| || |    
T  39534308 ttttcatgttcctcattgttctctcaaaaatattttttttc-ttctaatcacacgttgctttgttggaaagatgggttcaacattcatttcaagtacaac 39534406  T
Q  345 actt 348  Q
    ||||    
T  39534407 actt 39534410  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 24445037 - 24444960
Alignment:
Q  141 tttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcga 218  Q
    |||||| |||||| ||||||||||||  |||||| ||  ||||||||| ||||||||| ||||||| ||| |||||||    
T  24445037 tttcaaatgtctttaattcctcaaatttatttttcaataaagtaattgacatatcaacaacaataagaaaatagtcga 24444960  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 3198770 - 3198833
Alignment:
Q  155 aattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcga 218  Q
    ||||||||||||  |||||| ||||||||| |||| |||||||| ||||||| ||| |||||||    
T  3198770 aattcctcaaatatatttttcaaagaagtagttgttatatcaacaacaataagaaaatagtcga 3198833  T

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Target: scaffold0103 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 2009 - 1932
Alignment:
Q  153 tcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgatt 230  Q
    ||||||||| ||||| |||||| ||| ||||||||| ||||||||| ||||||| ||| |||||||||||||||||||    
T  2009 tcaattcctaaaatctatttttcaaataagtaattgacatatcaacaacaataagaaaatagtcgactctaaatgatt 1932  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 2638000 - 2638077
Alignment:
Q  153 tcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgatt 230  Q
    ||||||||| ||||| |||||| ||| ||||||||| ||||||||| ||||||| ||| |||||||||||||||||||    
T  2638000 tcaattcctaaaatctatttttcaaataagtaattgacatatcaacaacaataagaaaatagtcgactctaaatgatt 2638077  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 18032585 - 18032537
Alignment:
Q  286 tttctaatcacacaatgttttgttggaaatatgagatcaacgttcattt 334  Q
    ||||||||||||||||||||||||||||| ||| | ||||| |||||||    
T  18032585 tttctaatcacacaatgttttgttggaaagatgtgctcaacattcattt 18032537  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 25471472 - 25471589
Alignment:
Q  152 ttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcgactctaaatgattctcttaatgacatattttcat 251  Q
    |||||||| ||||||| | |||| ||||||||||||| ||||||||| |||| || ||| ||||  |||||||||||||||  || |||    |||||||    
T  25471472 ttcaattcttcaaatctagttttcaaagaagtaattgccatatcaacaacaacaagaaaatagttaactctaaatgattcttctagtgattggttttcat 25471571  T
Q  252 gttcctcattgttctctc 269  Q
    |||||||||| |||||||    
T  25471572 gttcctcattattctctc 25471589  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 27470050 - 27470113
Alignment:
Q  155 aattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcga 218  Q
    ||||||||||||  |||||| ||||||||||||||||||||||| ||||||| ||| |||||||    
T  27470050 aattcctcaaatatatttttcaaagaagtaattgtcatatcaacaacaataagaaaatagtcga 27470113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 37595439 - 37595362
Alignment:
Q  141 tttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtcga 218  Q
    |||||| |||| | |||||||||||   |||||| |||||||||||| |||||||||| ||||||| ||| |||||||    
T  37595439 tttcaaatgtcattaattcctcaaaaatatttttcaaagaagtaattatcatatcaacaacaataagaaaatagtcga 37595362  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 3245227 - 3245302
Alignment:
Q  141 tttcaattgtcttcaattcctcaaatcaatttttaaaagaagtaattgtcatatcaacgacaataaaaaattagtc 216  Q
    |||||| |||| | |||| |||||||  |||||| ||||||||||||||||||||||| ||||||| ||| |||||    
T  3245227 tttcaaatgtcattaatttctcaaatatattttttaaagaagtaattgtcatatcaacaacaataagaaaatagtc 3245302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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